Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000619666
Gene ID: ENSG00000275202
Gene Name: None
Sequence (UNICHARACTER ENCODING) GUUGUUAAAACCGGGCGAGGACUGCAGCCUCGAGUCCACCUCCCGACUGAACAGGUGGUUAACUCGCCCGGGGAGAGGAACUGCCAGCUCCCGCUUUCUGUUUCACCCGAGGGACCACGAACGCCGCCGCCGCCAUGCUUACUACGGAGCCGGGAGGAGGAGCCCGAAGUCGGCGCGCCGAGUGCGGCUGCGCGGGCCCCGCCGACGGAGCCCGCGGCCGGGACCCCGAACCCCCGCCUCGAGCCCGCCGCGCCGGGGCUCUCUCACCGGAACGCGAGUCCCCGCGGGGCCACCGGCGCGUGGCGGCUGAGCGGCCGCGUUUGGCUCCCGGAGCGCCCACACCCUCUCGGGCUUCCGGCUUUCUCCCGAGGCCCGGCUGCGCCUGGCUUGUGGUAGCAUCCGCUGUGGCCAGGCUCGGAGCUACACUCAGGAAAAGUGGAGUUAAUGGAGGUUCCUAGAGЖCACUCACACAAUUCUCAAUCCACAUUUCAAAAGGCUCCCCUGAGACGCACCCUGUCGGCCCCUUUCCGAAAGCACGCGAЖCUUAAGGCUGGCAGGUGCUUUAAAAGЖCACUCCUCCCAAGGЖCUAGGAAGCCUCUGAAAUGGGCUUGGAAGUUUCUAAUCCCAAAGЖCUUCGAACCCAGGAUCUGGAUAGCAAGCAAAAAUAUUUAGAUAUUUACUCAGUUGAAAACGUGGGGGGUGGCUUCGUGGUCUCUUCGCCAGCCAAAUCGCGUGGAAAACCACGACCUCAAUUUUUACAACAGCACGAAGACUUACAAGUGAGCGUAGCAGCGACUUCCUGGAACCUCAAACAAUGUGGGЖCGCUGCAAUAAUGCCUGAGGGCUUUUGЖCUUACAGUUGCCGCCGGAGACCUGGGGAGGGGGUAGUACUUGGGCCGGUGAGUCCAGCCUCAGGAЖCUGUCCUUUCAAAAAUGGUGAUGGAUGUAACAAGUUGCAUGUCUGGGCUUUAUUUCAGUGUAUUAAUUGUGCGAUCUUUUAAAAUAGCUGUAUUUUUAAAACUGUUUUACAGAAAUCUCUUUAAAAUGUGAUUAUUCUCUAUAUUCUUAAAGAAUACAAUGGCUAAUUAAAUCCUUUGUUGAUAACUGA
Sequence (SHORT NAMES ENCODING) GUUGUUAAAACCGGGCGAGGACUGCAGCCUCGAGUCCACCUCCCGACUGAACAGGUGGUUAACUCGCCCGGGGAGAGGAACUGCCAGCUCCCGCUUUCUGUUUCACCCGAGGGACCACGAACGCCGCCGCCGCCAUGCUUACUACGGAGCCGGGAGGAGGAGCCCGAAGUCGGCGCGCCGAGUGCGGCUGCGCGGGCCCCGCCGACGGAGCCCGCGGCCGGGACCCCGAACCCCCGCCUCGAGCCCGCCGCGCCGGGGCUCUCUCACCGGAACGCGAGUCCCCGCGGGGCCACCGGCGCGUGGCGGCUGAGCGGCCGCGUUUGGCUCCCGGAGCGCCCACACCCUCUCGGGCUUCCGGCUUUCUCCCGAGGCCCGGCUGCGCCUGGCUUGUGGUAGCAUCCGCUGUGGCCAGGCUCGGAGCUACACUCAGGAAAAGUGGAGUUAAUGGAGGUUCCUAGAGm6ACACUCACACAAUUCUCAAUCCACAUUUCAAAAGGCUCCCCUGAGACGCACCCUGUCGGCCCCUUUCCGAAAGCACGCGAm6ACUUAAGGCUGGCAGGUGCUUUAAAAGm6ACACUCCUCCCAAGGm6ACUAGGAAGCCUCUGAAAUGGGCUUGGAAGUUUCUAAUCCCAAAGm6ACUUCGAACCCAGGAUCUGGAUAGCAAGCAAAAAUAUUUAGAUAUUUACUCAGUUGAAAACGUGGGGGGUGGCUUCGUGGUCUCUUCGCCAGCCAAAUCGCGUGGAAAACCACGACCUCAAUUUUUACAACAGCACGAAGACUUACAAGUGAGCGUAGCAGCGACUUCCUGGAACCUCAAACAAUGUGGGm6ACGCUGCAAUAAUGCCUGAGGGCUUUUGm6ACUUACAGUUGCCGCCGGAGACCUGGGGAGGGGGUAGUACUUGGGCCGGUGAGUCCAGCCUCAGGAm6ACUGUCCUUUCAAAAAUGGUGAUGGAUGUAACAAGUUGCAUGUCUGGGCUUUAUUUCAGUGUAUUAAUUGUGCGAUCUUUUAAAAUAGCUGUAUUUUUAAAACUGUUUUACAGAAAUCUCUUUAAAAUGUGAUUAUUCUCUAUAUUCUUAAAGAAUACAAUGGCUAAUUAAAUCCUUUGUUGAUAACUGA
Sequence (MODOMICS CODE ENCODING) GUUGUUAAAACCGGGCGAGGACUGCAGCCUCGAGUCCACCUCCCGACUGAACAGGUGGUUAACUCGCCCGGGGAGAGGAACUGCCAGCUCCCGCUUUCUGUUUCACCCGAGGGACCACGAACGCCGCCGCCGCCAUGCUUACUACGGAGCCGGGAGGAGGAGCCCGAAGUCGGCGCGCCGAGUGCGGCUGCGCGGGCCCCGCCGACGGAGCCCGCGGCCGGGACCCCGAACCCCCGCCUCGAGCCCGCCGCGCCGGGGCUCUCUCACCGGAACGCGAGUCCCCGCGGGGCCACCGGCGCGUGGCGGCUGAGCGGCCGCGUUUGGCUCCCGGAGCGCCCACACCCUCUCGGGCUUCCGGCUUUCUCCCGAGGCCCGGCUGCGCCUGGCUUGUGGUAGCAUCCGCUGUGGCCAGGCUCGGAGCUACACUCAGGAAAAGUGGAGUUAAUGGAGGUUCCUAGAG2000000006ACACUCACACAAUUCUCAAUCCACAUUUCAAAAGGCUCCCCUGAGACGCACCCUGUCGGCCCCUUUCCGAAAGCACGCGA2000000006ACUUAAGGCUGGCAGGUGCUUUAAAAG2000000006ACACUCCUCCCAAGG2000000006ACUAGGAAGCCUCUGAAAUGGGCUUGGAAGUUUCUAAUCCCAAAG2000000006ACUUCGAACCCAGGAUCUGGAUAGCAAGCAAAAAUAUUUAGAUAUUUACUCAGUUGAAAACGUGGGGGGUGGCUUCGUGGUCUCUUCGCCAGCCAAAUCGCGUGGAAAACCACGACCUCAAUUUUUACAACAGCACGAAGACUUACAAGUGAGCGUAGCAGCGACUUCCUGGAACCUCAAACAAUGUGGG2000000006ACGCUGCAAUAAUGCCUGAGGGCUUUUG2000000006ACUUACAGUUGCCGCCGGAGACCUGGGGAGGGGGUAGUACUUGGGCCGGUGAGUCCAGCCUCAGGA2000000006ACUGUCCUUUCAAAAAUGGUGAUGGAUGUAACAAGUUGCAUGUCUGGGCUUUAUUUCAGUGUAUUAAUUGUGCGAUCUUUUAAAAUAGCUGUAUUUUUAAAACUGUUUUACAGAAAUCUCUUUAAAAUGUGAUUAUUCUCUAUAUUCUUAAAGAAUACAAUGGCUAAUUAAAUCCUUUGUUGAUAACUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 461 541 568 583 628 818 846 912
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 13:48975607:- 13:48975527:- 13:48975500:- 13:48975485:- 13:48975440:- 13:48975250:- 13:48975222:- 13:48975156:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
Lny8GcCeVGc9
Ap2q43bQLNek
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
5FhTyQVy2tKW
6AyXsheySjfx
Ap2q43bQLNek
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
Lny8GcCeVGc9
5FhTyQVy2tKW
6AyXsheySjfx
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
Lny8GcCeVGc9
5FhTyQVy2tKW
KRfQJWH4K5KH
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
D6ncpa2PPWj3
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
5FhTyQVy2tKW
6AyXsheySjfx
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
Ap2q43bQLNek
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
5FhTyQVy2tKW
Ap2q43bQLNek
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G