General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000399489
Gene ID:	ENSG00000189403
Gene Name:	HMGB1
Sequence (UNICHARACTER ENCODING)	GGUUCCGAGCACCGGAGCUGGCUGCUGCUCCCUCUUUGGAGCAAAGUUUUAUGCAAAGAGGGUGUUUUUUGAAACUUUCGGUGCACGGUGAUUUUUUUUUUUUAAGGUCCCAUAAUUAGGAAGAGUCGACUCGCUUAGGCCCUUGUUUAUUCCCUAUCUAGUGCAAAGCCACGAAUUGGCAGCAUGUUUUCUGACCUUUGGUUUGGUUGGUUUAAAAUGGUGUUCUAGAUUUUAAAAUCGUUUAAGUGACCAGUUAGAUACUCAUUCAGAGCAGACUCGGGCGGAUAGAUAGGGAAUACUGUAUGGGUAUAUCUUUGUGUCUAGACUUUUUGAGAUCGCCCUGAAGGЖCUGUUUUUGUUUUGUUUUGUUUGCUUGGCAUAGCCCCUUCAAGGAAUUUAAUCUCUCGGCCAUAUUCUUGUCUGAUUUUACGGAGGUUGAUGUCGCUACUGUGUUAAAUAACCAGUACUUUGGUUUUCAUUCCCUUACUAAGUACUUUAAGGUCUUAUAUGUCAUAAUUUUAUUGCUAACAUCAAAUAUUUAUUUUAUUUUUUAGAAAAAUAЖCUAAЖCAUGGGCAAAGGAGAUCCUAAGAAGCCGAGAGGCAAAAUGUCAUCAUAUGCAUUUUUUGUGCAAACUUGUCGGGAGGAGCAUAAGAAGAAGCACCCAGAUGCUUCAGUCAACUUCUCAGAGUUUUCUAAGAAGUGCUCAGAGAGGUGGAAGACCAUGUCUGCUAAAGAGAAAGGAAAAUUUGAAGAUAUGGCAAAAGCGGACAAGGCCCGUUAUGAAAGAGAAAUGAAAACCUAUAUCCCPCCCAAAGGGGAGACAAAAAAGAAGUUCAAGGAUCCCAAUGCACCCAAGAGGCCUCCUUCGGCCUUCUUCCUCUUCUGCUCUGAGUAUCGCCCAAAAAUCAAAGGAGAACAPCCUGGCCUGUCCAUUGGUGAUGUUGCGAAGAAACUGGGAGAGAUGUGGAAUAACACUGCUGCAGAUGACAAGCAGCCUUAUGAAAAGAAGGCUGCGAAGCUGAAGGAAAAAUAUGAAAAGUUCUAGUUAUUUCUGGAGUUGCUGUGGAUCUACAGAUACGUGAUAUUUUGGAUAUUGCUGCAUAUCGAGCUAAAGGAAAGCCUGAUGCAGCAAAAAAGGGAGUUGUCAAGGCUGAAAAAAGCAAGAAAAAGAAGGAAGAGGAGGAAGAUGAGGAAGAUGAAGAGGAUGAGGAGGAGGAGGAAGAUGAAGAAGAUGAAGAUGAAGAAGAAGAUGAUGAUGAUGAAUAAGUUGGUUCUAGCGCAGUUUUUUUUUUCUUGUCUAUAAAGCAUUUAACCCCCCUGUACACAACUCACUCCUUUUAAAGAAAAAAAUUGAAAUGUAAGGCUGUGUAAGAUUUGUUUUUAAACUGUACAGUGUCUUUUUUUGUAUAGUUAЖCACACUACCGAAUGUGUCUPUAGAUAGCCCUGUCCUGGUGGUAUUUUCAAUAGCCACUAACCUUGCCUGGUACAGUAUGGGGGUUGUAAAUUGGCAUGGAAAUUUAAAGCAGGUUCUUGUUGGUGCACAGCACAAAUUAGUUAUAUAUGGGGAUGGUAGUUUUUUCAUCUUCAGUUGUCUCUGAUGCAGCUUAUACGAAAUAAUUGUUGUUCUGUUAACUGAAUACCACUCUGUAAUUGCAAAAAAAAAAAAAAAGUUGCAGCUGUUUUGUUGACAUUCUGAAUGCUUCUAAGUAAAUACAAUUUUUUUUAUUA
Sequence (SHORT NAMES ENCODING)	GGUUCCGAGCACCGGAGCUGGCUGCUGCUCCCUCUUUGGAGCAAAGUUUUAUGCAAAGAGGGUGUUUUUUGAAACUUUCGGUGCACGGUGAUUUUUUUUUUUUAAGGUCCCAUAAUUAGGAAGAGUCGACUCGCUUAGGCCCUUGUUUAUUCCCUAUCUAGUGCAAAGCCACGAAUUGGCAGCAUGUUUUCUGACCUUUGGUUUGGUUGGUUUAAAAUGGUGUUCUAGAUUUUAAAAUCGUUUAAGUGACCAGUUAGAUACUCAUUCAGAGCAGACUCGGGCGGAUAGAUAGGGAAUACUGUAUGGGUAUAUCUUUGUGUCUAGACUUUUUGAGAUCGCCCUGAAGGm6ACUGUUUUUGUUUUGUUUUGUUUGCUUGGCAUAGCCCCUUCAAGGAAUUUAAUCUCUCGGCCAUAUUCUUGUCUGAUUUUACGGAGGUUGAUGUCGCUACUGUGUUAAAUAACCAGUACUUUGGUUUUCAUUCCCUUACUAAGUACUUUAAGGUCUUAUAUGUCAUAAUUUUAUUGCUAACAUCAAAUAUUUAUUUUAUUUUUUAGAAAAAUAm6ACUAAm6ACAUGGGCAAAGGAGAUCCUAAGAAGCCGAGAGGCAAAAUGUCAUCAUAUGCAUUUUUUGUGCAAACUUGUCGGGAGGAGCAUAAGAAGAAGCACCCAGAUGCUUCAGUCAACUUCUCAGAGUUUUCUAAGAAGUGCUCAGAGAGGUGGAAGACCAUGUCUGCUAAAGAGAAAGGAAAAUUUGAAGAUAUGGCAAAAGCGGACAAGGCCCGUUAUGAAAGAGAAAUGAAAACCUAUAUCCCYCCCAAAGGGGAGACAAAAAAGAAGUUCAAGGAUCCCAAUGCACCCAAGAGGCCUCCUUCGGCCUUCUUCCUCUUCUGCUCUGAGUAUCGCCCAAAAAUCAAAGGAGAACAYCCUGGCCUGUCCAUUGGUGAUGUUGCGAAGAAACUGGGAGAGAUGUGGAAUAACACUGCUGCAGAUGACAAGCAGCCUUAUGAAAAGAAGGCUGCGAAGCUGAAGGAAAAAUAUGAAAAGUUCUAGUUAUUUCUGGAGUUGCUGUGGAUCUACAGAUACGUGAUAUUUUGGAUAUUGCUGCAUAUCGAGCUAAAGGAAAGCCUGAUGCAGCAAAAAAGGGAGUUGUCAAGGCUGAAAAAAGCAAGAAAAAGAAGGAAGAGGAGGAAGAUGAGGAAGAUGAAGAGGAUGAGGAGGAGGAGGAAGAUGAAGAAGAUGAAGAUGAAGAAGAAGAUGAUGAUGAUGAAUAAGUUGGUUCUAGCGCAGUUUUUUUUUUCUUGUCUAUAAAGCAUUUAACCCCCCUGUACACAACUCACUCCUUUUAAAGAAAAAAAUUGAAAUGUAAGGCUGUGUAAGAUUUGUUUUUAAACUGUACAGUGUCUUUUUUUGUAUAGUUAm6ACACACUACCGAAUGUGUCUYUAGAUAGCCCUGUCCUGGUGGUAUUUUCAAUAGCCACUAACCUUGCCUGGUACAGUAUGGGGGUUGUAAAUUGGCAUGGAAAUUUAAAGCAGGUUCUUGUUGGUGCACAGCACAAAUUAGUUAUAUAUGGGGAUGGUAGUUUUUUCAUCUUCAGUUGUCUCUGAUGCAGCUUAUACGAAAUAAUUGUUGUUCUGUUAACUGAAUACCACUCUGUAAUUGCAAAAAAAAAAAAAAAGUUGCAGCUGUUUUGUUGACAUUCUGAAUGCUUCUAAGUAAAUACAAUUUUUUUUAUUA
Sequence (MODOMICS CODE ENCODING)	GGUUCCGAGCACCGGAGCUGGCUGCUGCUCCCUCUUUGGAGCAAAGUUUUAUGCAAAGAGGGUGUUUUUUGAAACUUUCGGUGCACGGUGAUUUUUUUUUUUUAAGGUCCCAUAAUUAGGAAGAGUCGACUCGCUUAGGCCCUUGUUUAUUCCCUAUCUAGUGCAAAGCCACGAAUUGGCAGCAUGUUUUCUGACCUUUGGUUUGGUUGGUUUAAAAUGGUGUUCUAGAUUUUAAAAUCGUUUAAGUGACCAGUUAGAUACUCAUUCAGAGCAGACUCGGGCGGAUAGAUAGGGAAUACUGUAUGGGUAUAUCUUUGUGUCUAGACUUUUUGAGAUCGCCCUGAAGG2000000006ACUGUUUUUGUUUUGUUUUGUUUGCUUGGCAUAGCCCCUUCAAGGAAUUUAAUCUCUCGGCCAUAUUCUUGUCUGAUUUUACGGAGGUUGAUGUCGCUACUGUGUUAAAUAACCAGUACUUUGGUUUUCAUUCCCUUACUAAGUACUUUAAGGUCUUAUAUGUCAUAAUUUUAUUGCUAACAUCAAAUAUUUAUUUUAUUUUUUAGAAAAAUA2000000006ACUAA2000000006ACAUGGGCAAAGGAGAUCCUAAGAAGCCGAGAGGCAAAAUGUCAUCAUAUGCAUUUUUUGUGCAAACUUGUCGGGAGGAGCAUAAGAAGAAGCACCCAGAUGCUUCAGUCAACUUCUCAGAGUUUUCUAAGAAGUGCUCAGAGAGGUGGAAGACCAUGUCUGCUAAAGAGAAAGGAAAAUUUGAAGAUAUGGCAAAAGCGGACAAGGCCCGUUAUGAAAGAGAAAUGAAAACCUAUAUCCC2000000009UCCCAAAGGGGAGACAAAAAAGAAGUUCAAGGAUCCCAAUGCACCCAAGAGGCCUCCUUCGGCCUUCUUCCUCUUCUGCUCUGAGUAUCGCCCAAAAAUCAAAGGAGAACA2000000009UCCUGGCCUGUCCAUUGGUGAUGUUGCGAAGAAACUGGGAGAGAUGUGGAAUAACACUGCUGCAGAUGACAAGCAGCCUUAUGAAAAGAAGGCUGCGAAGCUGAAGGAAAAAUAUGAAAAGUUCUAGUUAUUUCUGGAGUUGCUGUGGAUCUACAGAUACGUGAUAUUUUGGAUAUUGCUGCAUAUCGAGCUAAAGGAAAGCCUGAUGCAGCAAAAAAGGGAGUUGUCAAGGCUGAAAAAAGCAAGAAAAAGAAGGAAGAGGAGGAAGAUGAGGAAGAUGAAGAGGAUGAGGAGGAGGAGGAAGAUGAAGAAGAUGAAGAUGAAGAAGAAGAUGAUGAUGAUGAAUAAGUUGGUUCUAGCGCAGUUUUUUUUUUCUUGUCUAUAAAGCAUUUAACCCCCCUGUACACAACUCACUCCUUUUAAAGAAAAAAAUUGAAAUGUAAGGCUGUGUAAGAUUUGUUUUUAAACUGUACAGUGUCUUUUUUUGUAUAGUUA2000000006ACACACUACCGAAUGUGUCU2000000009UUAGAUAGCCCUGUCCUGGUGGUAUUUUCAAUAGCCACUAACCUUGCCUGGUACAGUAUGGGGGUUGUAAAUUGGCAUGGAAAUUUAAAGCAGGUUCUUGUUGGUGCACAGCACAAAUUAGUUAUAUAUGGGGAUGGUAGUUUUUUCAUCUUCAGUUGUCUCUGAUGCAGCUUAUACGAAAUAAUUGUUGUUCUGUUAACUGAAUACCACUCUGUAAUUGCAAAAAAAAAAAAAAAGUUGCAGCUGUUUUGUUGACAUUCUGAAUGCUUCUAAGUAAAUACAAUUUUUUUUAUUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	348	561	566	807	918	1413	1433
Modification Positions	m6A	m6A	m6A	Y	Y	m6A	Y
Genomic Coordinates	13:30463900:-	13:30463687:-	13:30463682:-	13:30463263:-	13:30462658:-	13:30461209:-	13:30461189:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw BsCW7emuRX7M Lny8GcCeVGc9	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8