Modomics - A Database of RNA Modifications

General Data

RNA Type snRNA
SOTerm SO:0000396
Original Source None
Sequence (UNICHARACTER ENCODING) §GUGCCUGCUUCGGCAGCACAUAUACUAAAAPUGGAACGAPACЖGAGʍAGAUUʍ#CAUGGBCBBUGCGCAʍGLAUGABACGCAAAUPCGUGAAGCGUUCCAUAUUUU
Sequence (SHORT NAMES ENCODING) mpppNGUGCCUGCUUCGGCAGCACAUAUACUAAAApYUGGAACGApYACpm6AGAGpAmAGAUUpAmpGmCAUGGpCmCpCmpCmUGCGCApAmGpm2GAUGApCmACGCAAAUpYCGUGAAGCGUUCCAUAUUUU
Sequence (MODOMICS CODE ENCODING) 2000001553NGUGCCUGCUUCGGCAGCACAUAUACUAAAA2000009551UUGGAACGA2000009551UAC2000006551AGAG2000090551AAGAUU2000090551A2000090551GCAUGG2000090551CC2000090551C2000090551CUGCGCA2000090551AG2000002551GAUGA2000090551CACGCAAAU2000009551UCGUGAAGCGUUCCAUAUUUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the alignment None 28 None 37 None 41 None 45 None 51 None 52 None 58 None 60 None 61 None 68 None 70 None 75 None 84 None
Position in the sequence 0 31 31 40 40 43 43 47 47 53 53 54 54 60 60 62 62 63 63 70 70 72 72 77 77 86 86
Modification positions mpppN pY pY pY pY pm6A pm6A pAm pAm pAm pAm pGm pGm pCm pCm pCm pCm pCm pCm pAm pAm pm2G pm2G pCm pCm pY pY
Level of Experimental Evidence 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5
Level of Experimental Reliability 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5 None 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS