Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000418532
Gene ID: ENSG00000139737
Gene Name: SLAIN1
Sequence (UNICHARACTER ENCODING) GGGGACUGGAGGGACGCACUGAGCAUGUGCAGAUCAGCUCGGUGGUGGCUGCCGCGGCCGGAGGCGAGGGCCCGGUGCUGAUGCGAACCGCCGGCUCGGCCUCAGCCCGCGCGUGGUCGGCCCCCCAGGCCGGGGCGACAGGGAAGGAGCCGUAGCCUCCCCGUGGCCCGAGGAGCCGGCGCGGCGGCGCGCACUCCCCGGCGGCCGCGGCGCCCUCGGGGCCCACGAUGAUGGCGGAGCAGGUGAAAUGCGCCUCGGCAGGGGUCAGCUCUGGAGCGGGCUCCGGGCCGGUGGUGAACGCGGAGCUGGAGGUGAAGAAGCUGCAGGAGCUGGUGCGCAAGCUGGAGAAGCAGAACGAGCAGCUGCGGAGUCGAGCGGCCAGCGCGGCCGCCGCCCCGCACCUGCUGCUGCUGCCGCCGCCGCCGCCCGCCGCGCCGCCCCCCGCUGGCCUGCAGCCUUUGGGUCCUCGGAGCCCCCCGGCCGCCACGGCCACCGCCGCGGCCUCAGGGGGCCUGGGGCUCGGGCUGGCGCUGGGCGCGGGGGGCGGUGGCGGCAGCGGUAGUGGCAGCGGCGGUGGCUCCAGCCCCGCGUUCCCGGGCACCUUCUGCCUGCCUAGCCCCGCGCCCUCCCUGCUUUGCAGCCUGGCGCAGCCACCCGAGGCGCCCUUCGUCUACUUCAAGCCGGCAGCAGGCUUCUUCGGCGCGGGCGGUGGCGGGCCGGAGCCGGGGGGCGCGGGGACGCCGCCAGGGGCAGCUGCAGCGCCGCCCUCGCCGCCCCCCACGCUGCUGGACGAGGUGGAAUUGCUGGAUCUGGAGAGCGUAGCCGCCUGGCGGGACGAGGACGACUACACCUGGUUAUACAUUGGCUCUUCAAAGACGUUCACCUCAUCAGAGAAAUCCCUGACUCCUUUGCAGUGGUGUAGACAUGUCCUAGAUAACCCAACUCCUGAGAUGGAAGCAGCGAGACGUUCCCUGUGCUPUAGACUGGAGCAAGGUUACACUUCCAGGGGCUCCCCACUCAGUCCCCAGUCAUCUAUCGACAGUGAGCUGAGUACUUCAGAAUUGGAGGAUGAUUCUAUCUCCAUGGGAUAUAAAUUACAGGACCUCACUGAUGUUCAGAUCAUGGCUCGUCUGCAAGAAGAAAGUCUCAGGCAAGAUUAUGCUUCUACUUCAGCAUCUGUAUCAAGACAUAGUUCCAGUGUGUCAUUGAGUUCAGGAAAAAAAGGGЖCAUGUAGUGAUCAAGAAUAUGACCAAUACAGUCUGGAGGAUGAAGAGGAAUUUGAUCAUUUGCCACCACCUCAGCCUCGUCUUCCAAGAUGUUCCCCUUUCCAAAGAGGAAUUCCCCAUUCACAGЖCUUUCUCCAGCAUUCGGGAGUGUAGGAGGAGCCCCAGUUCCCAGUAUUUUCCUUCAAAUAAUUACCAGCAGCAACAGUAUUAUUCACCUCAAGCCCAAACUCCAGAUCAGCAACCAAAUAGGACCAAUGGAGAUAAGCUCCGAAGAAGUAUGCCUAACCUAGCCCGGAUGCCAAGUACAACUGCCAUUAGUAGCAACAUUAGUUCUCCGGUCACCGUGCGAAAUAGUCAGAGUUUUGACUCAAGCUUGCAUGGAGCUGGAAAUGGAAUUUCAAGAAUACAAUCUUGUAUUCCAUCACCGGGACAGCUUCAACACAGGGUCCACAGCGUGGGGCAUUUCCCAGUGUCUAUCCGACAGCCUCUUAAAGCCACAGCCUAUGUGAGUCCAACCGUUCAAGGCAGCAGUAACAUGCCUPUAUCAAACGGCUUACAGCUGUAUUCCAACACAGGAAUCCCCACACCGAACAAAGCUGCAGCUUCUGGGAUAAUGGGUCGCAGUGCACUCCCAAGACCUUCGUUGGCAAUAAAUGGGAGUAACCUGCCUCGAAGCAAAAUUGCACAACCUGUUAGAAGUUUUCUUCAGCCUCCAAAGCCUCUGUCUUCACUCAGCACUCUGAGGGAUGGAAAUUGGAGAGAUGGUUGCUACUAAUGCAGUUUUAUGUACCCUUGAAAAAUGGGAAAGAAGUAAAAAUGAGGGUUGUGUUACCUAGCUGGCUGGGUAGCAGUGGAUGUUGGGAUAUUCUUUCCCUUUUGUGUUUUAAUAUAUUUACUGCAUUGUUUCUCAAUGGACCAGUCACCAGAGACUAAUUAUUGCACUUAAAUAUUUGCCUGAGAUACUGCAACAUUCUCAAACCCAUGGUUGCAGUAUUGUGACACUUAGAUCUAGGAAGUUUUUGUAGAACUGCUCUGUACCUGAAUACUUUUUGAGAGAAUUAAGAUGUAUCAAUAAUGCUUUGCCAUAUGAGUUUUUUAAAGUAЖCUUGUUCAAUUUACUCACGUGUUCUAAACAUCUUUCCAUUACAUGUUCUGUAUUUUAAUACAUUGCAUAUUGACAACUAGGUUCUAUAAUGUAUGCUUUGAAAUUUACUUUUUUAUAGUUUACAGGAAUUUUAUUUUUUGUGCCUAUUUCUUUUUACACCUAUGUGAACCACUAUGGAACAACUUAAAUUUUGUGCCAUAAAAAUAUUUUUGUGGUAAGGUACUAUUUUUUUAGCUCUAGGGAUAUAUCAGCAAAAACACAUCAUGCAAUUUGAGACACAUAAUUUUGUGUUGAAUGAGCACAACAUAAUUUGAAGCAUUGCAAGGAGAUAACCAGACAGCAGAAUUAAAUGGUCCUGUCUUUUUCAUUUUUAAUUUAUUGUCAUACAUGGGUUUCAUAUUUAUAACGGCAUCAUGAGCUCAUUGCACUUAAUACCUGCAAUGUUUGCUACUGUACCACAAUUGAUUUUCAAUACUPUAUUACGAAGGAUGAAACUGUAAUGUUUUAUUAACAAUGCUUCUGGAAAUGAAUGCAUUUUAAAGCAAAUAAAUCUUUUUGAUAGACCUUUUACAAAAUCCAUUUGCACUAAUGAAUGCUUUCUUAUGGCAUAUAЖCUUAAUAUUUGUUACUGUGUACACUGCUGUUUUGGAAUGUUCAGAAAUAAAGACUCUAUUUCAGCAA
Sequence (SHORT NAMES ENCODING) GGGGACUGGAGGGACGCACUGAGCAUGUGCAGAUCAGCUCGGUGGUGGCUGCCGCGGCCGGAGGCGAGGGCCCGGUGCUGAUGCGAACCGCCGGCUCGGCCUCAGCCCGCGCGUGGUCGGCCCCCCAGGCCGGGGCGACAGGGAAGGAGCCGUAGCCUCCCCGUGGCCCGAGGAGCCGGCGCGGCGGCGCGCACUCCCCGGCGGCCGCGGCGCCCUCGGGGCCCACGAUGAUGGCGGAGCAGGUGAAAUGCGCCUCGGCAGGGGUCAGCUCUGGAGCGGGCUCCGGGCCGGUGGUGAACGCGGAGCUGGAGGUGAAGAAGCUGCAGGAGCUGGUGCGCAAGCUGGAGAAGCAGAACGAGCAGCUGCGGAGUCGAGCGGCCAGCGCGGCCGCCGCCCCGCACCUGCUGCUGCUGCCGCCGCCGCCGCCCGCCGCGCCGCCCCCCGCUGGCCUGCAGCCUUUGGGUCCUCGGAGCCCCCCGGCCGCCACGGCCACCGCCGCGGCCUCAGGGGGCCUGGGGCUCGGGCUGGCGCUGGGCGCGGGGGGCGGUGGCGGCAGCGGUAGUGGCAGCGGCGGUGGCUCCAGCCCCGCGUUCCCGGGCACCUUCUGCCUGCCUAGCCCCGCGCCCUCCCUGCUUUGCAGCCUGGCGCAGCCACCCGAGGCGCCCUUCGUCUACUUCAAGCCGGCAGCAGGCUUCUUCGGCGCGGGCGGUGGCGGGCCGGAGCCGGGGGGCGCGGGGACGCCGCCAGGGGCAGCUGCAGCGCCGCCCUCGCCGCCCCCCACGCUGCUGGACGAGGUGGAAUUGCUGGAUCUGGAGAGCGUAGCCGCCUGGCGGGACGAGGACGACUACACCUGGUUAUACAUUGGCUCUUCAAAGACGUUCACCUCAUCAGAGAAAUCCCUGACUCCUUUGCAGUGGUGUAGACAUGUCCUAGAUAACCCAACUCCUGAGAUGGAAGCAGCGAGACGUUCCCUGUGCUYUAGACUGGAGCAAGGUUACACUUCCAGGGGCUCCCCACUCAGUCCCCAGUCAUCUAUCGACAGUGAGCUGAGUACUUCAGAAUUGGAGGAUGAUUCUAUCUCCAUGGGAUAUAAAUUACAGGACCUCACUGAUGUUCAGAUCAUGGCUCGUCUGCAAGAAGAAAGUCUCAGGCAAGAUUAUGCUUCUACUUCAGCAUCUGUAUCAAGACAUAGUUCCAGUGUGUCAUUGAGUUCAGGAAAAAAAGGGm6ACAUGUAGUGAUCAAGAAUAUGACCAAUACAGUCUGGAGGAUGAAGAGGAAUUUGAUCAUUUGCCACCACCUCAGCCUCGUCUUCCAAGAUGUUCCCCUUUCCAAAGAGGAAUUCCCCAUUCACAGm6ACUUUCUCCAGCAUUCGGGAGUGUAGGAGGAGCCCCAGUUCCCAGUAUUUUCCUUCAAAUAAUUACCAGCAGCAACAGUAUUAUUCACCUCAAGCCCAAACUCCAGAUCAGCAACCAAAUAGGACCAAUGGAGAUAAGCUCCGAAGAAGUAUGCCUAACCUAGCCCGGAUGCCAAGUACAACUGCCAUUAGUAGCAACAUUAGUUCUCCGGUCACCGUGCGAAAUAGUCAGAGUUUUGACUCAAGCUUGCAUGGAGCUGGAAAUGGAAUUUCAAGAAUACAAUCUUGUAUUCCAUCACCGGGACAGCUUCAACACAGGGUCCACAGCGUGGGGCAUUUCCCAGUGUCUAUCCGACAGCCUCUUAAAGCCACAGCCUAUGUGAGUCCAACCGUUCAAGGCAGCAGUAACAUGCCUYUAUCAAACGGCUUACAGCUGUAUUCCAACACAGGAAUCCCCACACCGAACAAAGCUGCAGCUUCUGGGAUAAUGGGUCGCAGUGCACUCCCAAGACCUUCGUUGGCAAUAAAUGGGAGUAACCUGCCUCGAAGCAAAAUUGCACAACCUGUUAGAAGUUUUCUUCAGCCUCCAAAGCCUCUGUCUUCACUCAGCACUCUGAGGGAUGGAAAUUGGAGAGAUGGUUGCUACUAAUGCAGUUUUAUGUACCCUUGAAAAAUGGGAAAGAAGUAAAAAUGAGGGUUGUGUUACCUAGCUGGCUGGGUAGCAGUGGAUGUUGGGAUAUUCUUUCCCUUUUGUGUUUUAAUAUAUUUACUGCAUUGUUUCUCAAUGGACCAGUCACCAGAGACUAAUUAUUGCACUUAAAUAUUUGCCUGAGAUACUGCAACAUUCUCAAACCCAUGGUUGCAGUAUUGUGACACUUAGAUCUAGGAAGUUUUUGUAGAACUGCUCUGUACCUGAAUACUUUUUGAGAGAAUUAAGAUGUAUCAAUAAUGCUUUGCCAUAUGAGUUUUUUAAAGUAm6ACUUGUUCAAUUUACUCACGUGUUCUAAACAUCUUUCCAUUACAUGUUCUGUAUUUUAAUACAUUGCAUAUUGACAACUAGGUUCUAUAAUGUAUGCUUUGAAAUUUACUUUUUUAUAGUUUACAGGAAUUUUAUUUUUUGUGCCUAUUUCUUUUUACACCUAUGUGAACCACUAUGGAACAACUUAAAUUUUGUGCCAUAAAAAUAUUUUUGUGGUAAGGUACUAUUUUUUUAGCUCUAGGGAUAUAUCAGCAAAAACACAUCAUGCAAUUUGAGACACAUAAUUUUGUGUUGAAUGAGCACAACAUAAUUUGAAGCAUUGCAAGGAGAUAACCAGACAGCAGAAUUAAAUGGUCCUGUCUUUUUCAUUUUUAAUUUAUUGUCAUACAUGGGUUUCAUAUUUAUAACGGCAUCAUGAGCUCAUUGCACUUAAUACCUGCAAUGUUUGCUACUGUACCACAAUUGAUUUUCAAUACUYUAUUACGAAGGAUGAAACUGUAAUGUUUUAUUAACAAUGCUUCUGGAAAUGAAUGCAUUUUAAAGCAAAUAAAUCUUUUUGAUAGACCUUUUACAAAAUCCAUUUGCACUAAUGAAUGCUUUCUUAUGGCAUAUAm6ACUUAAUAUUUGUUACUGUGUACACUGCUGUUUUGGAAUGUUCAGAAAUAAAGACUCUAUUUCAGCAA
Sequence (MODOMICS CODE ENCODING) GGGGACUGGAGGGACGCACUGAGCAUGUGCAGAUCAGCUCGGUGGUGGCUGCCGCGGCCGGAGGCGAGGGCCCGGUGCUGAUGCGAACCGCCGGCUCGGCCUCAGCCCGCGCGUGGUCGGCCCCCCAGGCCGGGGCGACAGGGAAGGAGCCGUAGCCUCCCCGUGGCCCGAGGAGCCGGCGCGGCGGCGCGCACUCCCCGGCGGCCGCGGCGCCCUCGGGGCCCACGAUGAUGGCGGAGCAGGUGAAAUGCGCCUCGGCAGGGGUCAGCUCUGGAGCGGGCUCCGGGCCGGUGGUGAACGCGGAGCUGGAGGUGAAGAAGCUGCAGGAGCUGGUGCGCAAGCUGGAGAAGCAGAACGAGCAGCUGCGGAGUCGAGCGGCCAGCGCGGCCGCCGCCCCGCACCUGCUGCUGCUGCCGCCGCCGCCGCCCGCCGCGCCGCCCCCCGCUGGCCUGCAGCCUUUGGGUCCUCGGAGCCCCCCGGCCGCCACGGCCACCGCCGCGGCCUCAGGGGGCCUGGGGCUCGGGCUGGCGCUGGGCGCGGGGGGCGGUGGCGGCAGCGGUAGUGGCAGCGGCGGUGGCUCCAGCCCCGCGUUCCCGGGCACCUUCUGCCUGCCUAGCCCCGCGCCCUCCCUGCUUUGCAGCCUGGCGCAGCCACCCGAGGCGCCCUUCGUCUACUUCAAGCCGGCAGCAGGCUUCUUCGGCGCGGGCGGUGGCGGGCCGGAGCCGGGGGGCGCGGGGACGCCGCCAGGGGCAGCUGCAGCGCCGCCCUCGCCGCCCCCCACGCUGCUGGACGAGGUGGAAUUGCUGGAUCUGGAGAGCGUAGCCGCCUGGCGGGACGAGGACGACUACACCUGGUUAUACAUUGGCUCUUCAAAGACGUUCACCUCAUCAGAGAAAUCCCUGACUCCUUUGCAGUGGUGUAGACAUGUCCUAGAUAACCCAACUCCUGAGAUGGAAGCAGCGAGACGUUCCCUGUGCU2000000009UUAGACUGGAGCAAGGUUACACUUCCAGGGGCUCCCCACUCAGUCCCCAGUCAUCUAUCGACAGUGAGCUGAGUACUUCAGAAUUGGAGGAUGAUUCUAUCUCCAUGGGAUAUAAAUUACAGGACCUCACUGAUGUUCAGAUCAUGGCUCGUCUGCAAGAAGAAAGUCUCAGGCAAGAUUAUGCUUCUACUUCAGCAUCUGUAUCAAGACAUAGUUCCAGUGUGUCAUUGAGUUCAGGAAAAAAAGGG2000000006ACAUGUAGUGAUCAAGAAUAUGACCAAUACAGUCUGGAGGAUGAAGAGGAAUUUGAUCAUUUGCCACCACCUCAGCCUCGUCUUCCAAGAUGUUCCCCUUUCCAAAGAGGAAUUCCCCAUUCACAG2000000006ACUUUCUCCAGCAUUCGGGAGUGUAGGAGGAGCCCCAGUUCCCAGUAUUUUCCUUCAAAUAAUUACCAGCAGCAACAGUAUUAUUCACCUCAAGCCCAAACUCCAGAUCAGCAACCAAAUAGGACCAAUGGAGAUAAGCUCCGAAGAAGUAUGCCUAACCUAGCCCGGAUGCCAAGUACAACUGCCAUUAGUAGCAACAUUAGUUCUCCGGUCACCGUGCGAAAUAGUCAGAGUUUUGACUCAAGCUUGCAUGGAGCUGGAAAUGGAAUUUCAAGAAUACAAUCUUGUAUUCCAUCACCGGGACAGCUUCAACACAGGGUCCACAGCGUGGGGCAUUUCCCAGUGUCUAUCCGACAGCCUCUUAAAGCCACAGCCUAUGUGAGUCCAACCGUUCAAGGCAGCAGUAACAUGCCU2000000009UUAUCAAACGGCUUACAGCUGUAUUCCAACACAGGAAUCCCCACACCGAACAAAGCUGCAGCUUCUGGGAUAAUGGGUCGCAGUGCACUCCCAAGACCUUCGUUGGCAAUAAAUGGGAGUAACCUGCCUCGAAGCAAAAUUGCACAACCUGUUAGAAGUUUUCUUCAGCCUCCAAAGCCUCUGUCUUCACUCAGCACUCUGAGGGAUGGAAAUUGGAGAGAUGGUUGCUACUAAUGCAGUUUUAUGUACCCUUGAAAAAUGGGAAAGAAGUAAAAAUGAGGGUUGUGUUACCUAGCUGGCUGGGUAGCAGUGGAUGUUGGGAUAUUCUUUCCCUUUUGUGUUUUAAUAUAUUUACUGCAUUGUUUCUCAAUGGACCAGUCACCAGAGACUAAUUAUUGCACUUAAAUAUUUGCCUGAGAUACUGCAACAUUCUCAAACCCAUGGUUGCAGUAUUGUGACACUUAGAUCUAGGAAGUUUUUGUAGAACUGCUCUGUACCUGAAUACUUUUUGAGAGAAUUAAGAUGUAUCAAUAAUGCUUUGCCAUAUGAGUUUUUUAAAGUA2000000006ACUUGUUCAAUUUACUCACGUGUUCUAAACAUCUUUCCAUUACAUGUUCUGUAUUUUAAUACAUUGCAUAUUGACAACUAGGUUCUAUAAUGUAUGCUUUGAAAUUUACUUUUUUAUAGUUUACAGGAAUUUUAUUUUUUGUGCCUAUUUCUUUUUACACCUAUGUGAACCACUAUGGAACAACUUAAAUUUUGUGCCAUAAAAAUAUUUUUGUGGUAAGGUACUAUUUUUUUAGCUCUAGGGAUAUAUCAGCAAAAACACAUCAUGCAAUUUGAGACACAUAAUUUUGUGUUGAAUGAGCACAACAUAAUUUGAAGCAUUGCAAGGAGAUAACCAGACAGCAGAAUUAAAUGGUCCUGUCUUUUUCAUUUUUAAUUUAUUGUCAUACAUGGGUUUCAUAUUUAUAACGGCAUCAUGAGCUCAUUGCACUUAAUACCUGCAAUGUUUGCUACUGUACCACAAUUGAUUUUCAAUACU2000000009UUAUUACGAAGGAUGAAACUGUAAUGUUUUAUUAACAAUGCUUCUGGAAAUGAAUGCAUUUUAAAGCAAAUAAAUCUUUUUGAUAGACCUUUUACAAAAUCCAUUUGCACUAAUGAAUGCUUUCUUAUGGCAUAUA2000000006ACUUAAUAUUUGUUACUGUGUACACUGCUGUUUUGGAAUGUUCAGAAAUAAAGACUCUAUUUCAGCAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 979 1227 1353 1767 2329 2806 2942
Modification Positions Y m6A m6A Y m6A Y m6A
Genomic Coordinates 13:77719657:+ 13:77746597:+ 13:77746723:+ 13:77760953:+ 13:77763549:+ 13:77764026:+ 13:77764162:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
BkoLW2CBToyL
KjeH7Nsffuas
UKen6WEino9G
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8