Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000310847
Gene ID: ENSG00000088448
Gene Name: ANKRD10
Sequence (UNICHARACTER ENCODING) GGCGGCGGCUUCUCGAGUCCUCCCCGACGCGUCCUCUAGGCCAGCGAGCCCCGCGCUCUCCGGUGACGGACCAUGUCGGCGGCGGGAGCGGGCGCGGGCGUAGAGGCGGGCUUCUC?AGCGAGGAGCUGCUCUCGCUCCGUUUCCCGCUGCACCGCGCCUGCCGCGACGGGGACCUGGCCACGCUCUGCUCGCUGCUGCAGCAGACACCCCACGCCCACCUGGCCUCUGAGGACUCCUUCUAUGGCUGGACGCCCGUGCACUGGGCCGCGCAUUUCGGCAAGUUGGAGUGCUUAGUGCAGUUGGUGAGAGCGGGAGCCACACUCAACGUCUCCACCACACGGUACGCGCAGACGCCAGCCCACAUUGCAGCCUUUGGGGGACAPCCUCAGUGCCUGGUCUGGCUGAUUCAAGCAGGAGCCAACAUUAACAAACCGGAUUGUGAGGGUGAAACUCCCAUUCACAAGGCAGCUCGCUCUGGGAGCCUAGAAUGCAUCAGUGCCCUUGUGGCGAAUGGGGCUCACGUCGAGUUUAUUUCACAGAGCAGUGUACAUUCUUGUCUUCCAGGGGAACUUCAACAUGGAGUUACUUUUGAUCCCUCAGUUUUAAUUCAGUGUCUAAAGCCUGAGAAAUGCCAGUGGCCUGACAGCAGCAGACAUUGCACAAACCCAGGGUUUCCAAGAGUGUGCCCAGUUUCUCUUGAACCUCCAGAAUUGUCAUCUGAACCAUUUCUAUAACAAUGGCAUCUUAAAUGGGGGUCAUCAGAAUGUAUUUCCUAAUCAUAUUAGUGUGGGAACAAAUCGAAAGAGAUGCUUGGAAGACUCAGAAGACUUUGGAGUAAAGAAAGCUAGAЖCUGAAGGUGAGЖCCGCUUUGCGGGUGGGAAGAGCACACUUAUUUUUCCUUUCUGUAAUAUGUUUUCUUUUUAUGGCUGAGCGCACCUUCGAGAUGAGЖCCUUCACUUCAGGUGGUAAUGCGCCUGGUGGЖUUGUGCGGUGACGGUGGAGAUUUCUCCUGUACUGCCACUGCGAAGAUGGGЖCUUAЖCAAAAGGGAAUGUGAGGGAAAUACUGAUGGCCCAAGUGUAAAUGUCUAUGUGGAЖCUUUUUGAGCACCCAUGUUUACCUGCCAUGAAUUAGAUUUUUUAAUUUGUUGUAUCUGUUUGAAAUAUAUCUAUUAAAGAAAAUCUGCCACUGUGCCUGAA
Sequence (SHORT NAMES ENCODING) GGCGGCGGCUUCUCGAGUCCUCCCCGACGCGUCCUCUAGGCCAGCGAGCCCCGCGCUCUCCGGUGACGGACCAUGUCGGCGGCGGGAGCGGGCGCGGGCGUAGAGGCGGGCUUCUCm5CAGCGAGGAGCUGCUCUCGCUCCGUUUCCCGCUGCACCGCGCCUGCCGCGACGGGGACCUGGCCACGCUCUGCUCGCUGCUGCAGCAGACACCCCACGCCCACCUGGCCUCUGAGGACUCCUUCUAUGGCUGGACGCCCGUGCACUGGGCCGCGCAUUUCGGCAAGUUGGAGUGCUUAGUGCAGUUGGUGAGAGCGGGAGCCACACUCAACGUCUCCACCACACGGUACGCGCAGACGCCAGCCCACAUUGCAGCCUUUGGGGGACAYCCUCAGUGCCUGGUCUGGCUGAUUCAAGCAGGAGCCAACAUUAACAAACCGGAUUGUGAGGGUGAAACUCCCAUUCACAAGGCAGCUCGCUCUGGGAGCCUAGAAUGCAUCAGUGCCCUUGUGGCGAAUGGGGCUCACGUCGAGUUUAUUUCACAGAGCAGUGUACAUUCUUGUCUUCCAGGGGAACUUCAACAUGGAGUUACUUUUGAUCCCUCAGUUUUAAUUCAGUGUCUAAAGCCUGAGAAAUGCCAGUGGCCUGACAGCAGCAGACAUUGCACAAACCCAGGGUUUCCAAGAGUGUGCCCAGUUUCUCUUGAACCUCCAGAAUUGUCAUCUGAACCAUUUCUAUAACAAUGGCAUCUUAAAUGGGGGUCAUCAGAAUGUAUUUCCUAAUCAUAUUAGUGUGGGAACAAAUCGAAAGAGAUGCUUGGAAGACUCAGAAGACUUUGGAGUAAAGAAAGCUAGAm6ACUGAAGGUGAGm6ACCGCUUUGCGGGUGGGAAGAGCACACUUAUUUUUCCUUUCUGUAAUAUGUUUUCUUUUUAUGGCUGAGCGCACCUUCGAGAUGAGm6ACCUUCACUUCAGGUGGUAAUGCGCCUGGUGGm6AUUGUGCGGUGACGGUGGAGAUUUCUCCUGUACUGCCACUGCGAAGAUGGGm6ACUUAm6ACAAAAGGGAAUGUGAGGGAAAUACUGAUGGCCCAAGUGUAAAUGUCUAUGUGGAm6ACUUUUUGAGCACCCAUGUUUACCUGCCAUGAAUUAGAUUUUUUAAUUUGUUGUAUCUGUUUGAAAUAUAUCUAUUAAAGAAAAUCUGCCACUGUGCCUGAA
Sequence (MODOMICS CODE ENCODING) GGCGGCGGCUUCUCGAGUCCUCCCCGACGCGUCCUCUAGGCCAGCGAGCCCCGCGCUCUCCGGUGACGGACCAUGUCGGCGGCGGGAGCGGGCGCGGGCGUAGAGGCGGGCUUCUC2000000005CAGCGAGGAGCUGCUCUCGCUCCGUUUCCCGCUGCACCGCGCCUGCCGCGACGGGGACCUGGCCACGCUCUGCUCGCUGCUGCAGCAGACACCCCACGCCCACCUGGCCUCUGAGGACUCCUUCUAUGGCUGGACGCCCGUGCACUGGGCCGCGCAUUUCGGCAAGUUGGAGUGCUUAGUGCAGUUGGUGAGAGCGGGAGCCACACUCAACGUCUCCACCACACGGUACGCGCAGACGCCAGCCCACAUUGCAGCCUUUGGGGGACA2000000009UCCUCAGUGCCUGGUCUGGCUGAUUCAAGCAGGAGCCAACAUUAACAAACCGGAUUGUGAGGGUGAAACUCCCAUUCACAAGGCAGCUCGCUCUGGGAGCCUAGAAUGCAUCAGUGCCCUUGUGGCGAAUGGGGCUCACGUCGAGUUUAUUUCACAGAGCAGUGUACAUUCUUGUCUUCCAGGGGAACUUCAACAUGGAGUUACUUUUGAUCCCUCAGUUUUAAUUCAGUGUCUAAAGCCUGAGAAAUGCCAGUGGCCUGACAGCAGCAGACAUUGCACAAACCCAGGGUUUCCAAGAGUGUGCCCAGUUUCUCUUGAACCUCCAGAAUUGUCAUCUGAACCAUUUCUAUAACAAUGGCAUCUUAAAUGGGGGUCAUCAGAAUGUAUUUCCUAAUCAUAUUAGUGUGGGAACAAAUCGAAAGAGAUGCUUGGAAGACUCAGAAGACUUUGGAGUAAAGAAAGCUAGA2000000006ACUGAAGGUGAG2000000006ACCGCUUUGCGGGUGGGAAGAGCACACUUAUUUUUCCUUUCUGUAAUAUGUUUUCUUUUUAUGGCUGAGCGCACCUUCGAGAUGAG2000000006ACCUUCACUUCAGGUGGUAAUGCGCCUGGUGG2000000006AUUGUGCGGUGACGGUGGAGAUUUCUCCUGUACUGCCACUGCGAAGAUGGG2000000006ACUUA2000000006ACAAAAGGGAAUGUGAGGGAAAUACUGAUGGCCCAAGUGUAAAUGUCUAUGUGGA2000000006ACUUUUUGAGCACCCAUGUUUACCUGCCAUGAAUUAGAUUUUUUAAUUUGUUGUAUCUGUUUGAAAUAUAUCUAUUAAAGAAAAUCUGCCACUGUGCCUGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 117 384 851 863 949 981 1032 1037 1092
Modification Positions m5C Y m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 13:110914890:- 13:110910669:- 13:110893034:- 13:110893022:- 13:110892936:- 13:110892904:- 13:110892853:- 13:110892848:- 13:110892793:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 4Hod8ruppnD2
5tjPWDS39J3i
9De2LACts9mj
BnpqjwVeTStU
bvmqLAbo2zqf
mNhhJTdKpjtR
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
5aTkEfEpX8Xm
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
WiQcrNTGZHPT
BsCW7emuRX7M
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
93arJtwJmuS9
nfCHyrYzE6fB
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
3TeAZFYFxgvp
4HMi5ykupT9V
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8