General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000614364
Gene ID:	ENSG00000278238
Gene Name:	CKAP2-DT
Sequence (UNICHARACTER ENCODING)	GGCGGAGCCUGGЖCUGCAGUUGCCGGGGCCGGUCUGGUGUCUGCCCAGUUCGGUUGGGЖCUGAGUCUGCAGGUUUCAAACCUAAACAGCGCUCUUCAUCCUGGACGUGCGAUGGGGGAGGAGUCGGCCUGCUCAGUCCCCACGACAUAGCAGGЖCUAGGUUGACAAACAACCGAGAUGGGЖCACAUCUUGAGACCCUCACAGUCCUUGGAGGAAGGCAGACGAGAAAAAGACAAGAAAAGUGUUGAUUGGCUGCCCUUCUUAUUAAACAUCGACGCGUUCACUGACGAGGACGUAAACACCGAUCUGGCGUACCACGAGCGUGUGUAUUUUCGUUUCACAAAUACUGCUUCAUUUUGAGCAUCAAUUCUGAGGUGGGЖCGUUAUCACCACUUUUUCCACUGAGAGGUGACAGGUUCAGAGGUUGUUUGUCCACGUUUGCACAGCGUGUGAAGGGGAACUGAAAUUGGGAUCUACUUUCCAUACCUPUAUUCUAAGCAAUUAUCAAAUGCAAAAAAGGGAGGAGAGGAGGAGAAACAGAAAAAAAUGAAGAUAAACCUCAUCCCCUCCUCAAGGUUAUAUAUAAUUCUCCUUUGAAGAUAAAAUAGCAUUUGUUACAGAC
Sequence (SHORT NAMES ENCODING)	GGCGGAGCCUGGm6ACUGCAGUUGCCGGGGCCGGUCUGGUGUCUGCCCAGUUCGGUUGGGm6ACUGAGUCUGCAGGUUUCAAACCUAAACAGCGCUCUUCAUCCUGGACGUGCGAUGGGGGAGGAGUCGGCCUGCUCAGUCCCCACGACAUAGCAGGm6ACUAGGUUGACAAACAACCGAGAUGGGm6ACACAUCUUGAGACCCUCACAGUCCUUGGAGGAAGGCAGACGAGAAAAAGACAAGAAAAGUGUUGAUUGGCUGCCCUUCUUAUUAAACAUCGACGCGUUCACUGACGAGGACGUAAACACCGAUCUGGCGUACCACGAGCGUGUGUAUUUUCGUUUCACAAAUACUGCUUCAUUUUGAGCAUCAAUUCUGAGGUGGGm6ACGUUAUCACCACUUUUUCCACUGAGAGGUGACAGGUUCAGAGGUUGUUUGUCCACGUUUGCACAGCGUGUGAAGGGGAACUGAAAUUGGGAUCUACUUUCCAUACCUYUAUUCUAAGCAAUUAUCAAAUGCAAAAAAGGGAGGAGAGGAGGAGAAACAGAAAAAAAUGAAGAUAAACCUCAUCCCCUCCUCAAGGUUAUAUAUAAUUCUCCUUUGAAGAUAAAAUAGCAUUUGUUACAGAC
Sequence (MODOMICS CODE ENCODING)	GGCGGAGCCUGG2000000006ACUGCAGUUGCCGGGGCCGGUCUGGUGUCUGCCCAGUUCGGUUGGG2000000006ACUGAGUCUGCAGGUUUCAAACCUAAACAGCGCUCUUCAUCCUGGACGUGCGAUGGGGGAGGAGUCGGCCUGCUCAGUCCCCACGACAUAGCAGG2000000006ACUAGGUUGACAAACAACCGAGAUGGG2000000006ACACAUCUUGAGACCCUCACAGUCCUUGGAGGAAGGCAGACGAGAAAAAGACAAGAAAAGUGUUGAUUGGCUGCCCUUCUUAUUAAACAUCGACGCGUUCACUGACGAGGACGUAAACACCGAUCUGGCGUACCACGAGCGUGUGUAUUUUCGUUUCACAAAUACUGCUUCAUUUUGAGCAUCAAUUCUGAGGUGGG2000000006ACGUUAUCACCACUUUUUCCACUGAGAGGUGACAGGUUCAGAGGUUGUUUGUCCACGUUUGCACAGCGUGUGAAGGGGAACUGAAAUUGGGAUCUACUUUCCAUACCU2000000009UUAUUCUAAGCAAUUAUCAAAUGCAAAAAAGGGAGGAGAGGAGGAGAAACAGAAAAAAAUGAAGAUAAACCUCAUCCCCUCCUCAAGGUUAUAUAUAAUUCUCCUUUGAAGAUAAAAUAGCAUUUGUUACAGAC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	13	59	154	181	378	486
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	13:52455380:-	13:52455334:-	13:52455239:-	13:52455212:-	13:52455015:-	13:52454907:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	6UuHp6YApVKv gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	BtsJQJ3DteUq Yfn77uLS5tv8