Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000674196
Gene Name: ENSG00000244754
Sequence (UNICHARACTER ENCODING) GGCCUGGGUAACCGAGAGGUGACCGCCAUCUUGCGUACGGAGAGGUUCGUGUCUUCCUAAAAGAAGGUUUUAUUGGGAGGUAAAGGUCAAUGCGUAGGGGUAGAGUAAGAUGUCUUAUGGUGAAAUUGAAGGUAAAUUCUUGGGACCUAGAGAAGAAGUAACGAGUGAGCCACGCUGUAAAAAAUUGAAGUCAACCACAGAGUCGUAUGUUUUUCACAAUCAUAGUAAUGCUGAUUUUCACAGAAUCCAAGAGAAAЖCUGGAAAUGAUUGGGUCCCUGUGACCAUCAUUGAUGUCAGAGGЖCAUAGUUAUUUGCAGGAGAACAAAAUCAAAACUACAGAUUUGCAUAGЖCCUUUGCAUGAUGAGAUGCCUGGUAAUAGACCAGAUGUUAUUGAAUCCAUUGAUUCACAGGUUUUACAGGAAGCACGUCCUCCAUUAGUAUCCGCAGACGAUGAGAUAUAUAGCACAAGUAAAGCAUUUAUAGGACCCAUUUACAAACCCCCUGAGAAAAAGAAACGUAAUGAAGGGAGGAAUGAGGCACAUGUUCUAAAUGGUAUAAAUGACAGAGGAGGACAAAAAGAGAAACAGAAAUUUAACUCUGAAAAAUCAGAGAUUGACAAUGAAUUAUUCCAGUUUUACAAAGAAAUUGAAGAGCUUGAAAAGGAAAAAGAUGGUUUUGAGAACAGUUGUAAAGAAUCUGAACCUUCUCAGGAACAAUUUGUUCCAUUUUAUGAGGGUCAUAAUAAUGGUCUCUUAAAACCUGAUGAAGAAAAGAAAGAUCUUAGUAAUAAAGCUAUGCCAUCACAUUGUGAUUAUCAGCAGAЖCUUGGGGAAUGAGCCAGACAAAUAUCCCUGUAAUGGЖCAAGUAAUACCUACAUUUUGUGACACUUCAUUUACUUCUUUCAGGCCUGAAUGGCAGUCAGUAUAUCCUUUUAUAGUGCCCUAUGGUCCCCCUCUUCCCAGUUUGAЖCUAUCAUUUAAACAUUCAGAGAUUCAGUGGUCCACCAAAUCCACCAUCAAAUAUUUUCCAAGCCCAAGAUGACUCUCAGAUACAAAAUGGAUAUUAUGUAAAUAAUUGUCAUGUUAACUGGAAUUGCAUGACUUUUGAUCAGAЖCAAUGAAUAUACUGЖCUGUAGUGAGAAUAGGAGUAGUGUUCAUCCCUCUGGAAAUGGCUGCAGUAUGCAAGAUCGAUAUGUGAGUAAUGGUUUCUGUGAAGUCAGAGAAAGAUGCUGGAAAGAUCAUUGUAUGGЖCAAGCAUAAUGGAACAGACAGGUUUGUGAACCAGCAGUUUCAAGAGGAAAAGUUAAAUAAAUUGCAGAAGUUACUUAUUCUUUUAAGAGGUCUGCCUGGUUCUGGGAAAACAACAUUGUCUCGAAUUCUGCUUGGUCAGAAUCGUGAUGGCAUUGUGUUCAGCACUGAUGACUAUUUUCACCAUCAAGAUGGGUACAGCAAAACAAGCUAUCGAUCAGGGAAGAUCUCCAGUUAUAAUAGAUAЖCACUAAUAUACAAGCUUGGGAAAUGAAGCCAUAUGUGGAAGUGGCCAUAGGAAAAGGAUACЖGAGUAGAGUUUCAUGAACCUGAAACUUGGUGGAAAUUUGAUCCUGAAGAAUUAGAAAAGAGGAAUAAACAUGGUGUGUCUCGAAAGAAGAUUGCUCAGAUGUUGGAUCGUUAUGAAUAUCAAAUGUCCAUUUCUAUUGUAAUGAAUUCAGUGGAACCAUCACACAAAAGCACACAAAGACCUCCUCCPCCACAGGGGAGACAGAGGUGGGGAGGCUCUCUUGGCUCACAUAAUCGUGUCUGUGUCACAAAUAAUCAUUAAAUUAGCUAUUUUCAGCUAЖCACAUUUGUUGUUGCACUUGAAAAAGAGUUAGUGAGCCUGUCUUGGAGUUUAAGUAGUUUCAAAUAAAAAAAGGCUACAGUGCCUCACAAAGGAUGUUCCCAGCAAGUUGUUUAAAUUCCCAGCAAGUUGUUAAAGUGUAAAUAAAAAUAUAUGAAAUUGUAUUUUAAAUGUUUUUAUAUUCUCUUGUUGUAAUACUCUUGGCUGUUAUGGAAGCACCUGAGUAAUAGAGUGGUGGGUAGGAGCUAGGAUGUUUUUCUACAAUCGAAUUUUAAACUAAUUUAUCUAUUUUAUAGACACUAUUGAACAGUUUUUUAAUAGUUCAUAUCUAAAUCUAACUUUUCAUAAAACUUUACGGUUUUUCCUUCACUACCUUAAAUAUGCAAGAAAUACUGACUUGGUAUAGGGUACCUUAGUUUUCUCUAUUCAUUAGACAGGUAAAAUUAUAUUUCAGCUGAUUGAUCUGUGUGACAAAAUUAUUUCUUAGCUAUAAUCAGCACAUCACUUAGUUCAAACAAAAUUCCCCAGCAAAUGUUAGAUAGUAGGUAUAUCAGUCACCUGGGGAGUUUUCUUCAUAAUAUGCAUAUUCAUCUUGUAAUGCAUACAUAGUUAUCAUCCUCCUUCUCAACCCAUCUCCCUAACCCCACAUGCUUGCCAGUUCUUGAAGGGAUAAAGUGAUUCUAAUAAUGUUUUACUUCUCUCUGUUCAAUUUAAUGUGAUAUAAUUCUAGUAUAAAAAUAUUUUGGACAGUUGCUUAACAUGGUCAUAAGAGGAUUUGU
Sequence (SHORT NAMES ENCODING) GGCCUGGGUAACCGAGAGGUGACCGCCAUCUUGCGUACGGAGAGGUUCGUGUCUUCCUAAAAGAAGGUUUUAUUGGGAGGUAAAGGUCAAUGCGUAGGGGUAGAGUAAGAUGUCUUAUGGUGAAAUUGAAGGUAAAUUCUUGGGACCUAGAGAAGAAGUAACGAGUGAGCCACGCUGUAAAAAAUUGAAGUCAACCACAGAGUCGUAUGUUUUUCACAAUCAUAGUAAUGCUGAUUUUCACAGAAUCCAAGAGAAAm6ACUGGAAAUGAUUGGGUCCCUGUGACCAUCAUUGAUGUCAGAGGm6ACAUAGUUAUUUGCAGGAGAACAAAAUCAAAACUACAGAUUUGCAUAGm6ACCUUUGCAUGAUGAGAUGCCUGGUAAUAGACCAGAUGUUAUUGAAUCCAUUGAUUCACAGGUUUUACAGGAAGCACGUCCUCCAUUAGUAUCCGCAGACGAUGAGAUAUAUAGCACAAGUAAAGCAUUUAUAGGACCCAUUUACAAACCCCCUGAGAAAAAGAAACGUAAUGAAGGGAGGAAUGAGGCACAUGUUCUAAAUGGUAUAAAUGACAGAGGAGGACAAAAAGAGAAACAGAAAUUUAACUCUGAAAAAUCAGAGAUUGACAAUGAAUUAUUCCAGUUUUACAAAGAAAUUGAAGAGCUUGAAAAGGAAAAAGAUGGUUUUGAGAACAGUUGUAAAGAAUCUGAACCUUCUCAGGAACAAUUUGUUCCAUUUUAUGAGGGUCAUAAUAAUGGUCUCUUAAAACCUGAUGAAGAAAAGAAAGAUCUUAGUAAUAAAGCUAUGCCAUCACAUUGUGAUUAUCAGCAGAm6ACUUGGGGAAUGAGCCAGACAAAUAUCCCUGUAAUGGm6ACAAGUAAUACCUACAUUUUGUGACACUUCAUUUACUUCUUUCAGGCCUGAAUGGCAGUCAGUAUAUCCUUUUAUAGUGCCCUAUGGUCCCCCUCUUCCCAGUUUGAm6ACUAUCAUUUAAACAUUCAGAGAUUCAGUGGUCCACCAAAUCCACCAUCAAAUAUUUUCCAAGCCCAAGAUGACUCUCAGAUACAAAAUGGAUAUUAUGUAAAUAAUUGUCAUGUUAACUGGAAUUGCAUGACUUUUGAUCAGAm6ACAAUGAAUAUACUGm6ACUGUAGUGAGAAUAGGAGUAGUGUUCAUCCCUCUGGAAAUGGCUGCAGUAUGCAAGAUCGAUAUGUGAGUAAUGGUUUCUGUGAAGUCAGAGAAAGAUGCUGGAAAGAUCAUUGUAUGGm6ACAAGCAUAAUGGAACAGACAGGUUUGUGAACCAGCAGUUUCAAGAGGAAAAGUUAAAUAAAUUGCAGAAGUUACUUAUUCUUUUAAGAGGUCUGCCUGGUUCUGGGAAAACAACAUUGUCUCGAAUUCUGCUUGGUCAGAAUCGUGAUGGCAUUGUGUUCAGCACUGAUGACUAUUUUCACCAUCAAGAUGGGUACAGCAAAACAAGCUAUCGAUCAGGGAAGAUCUCCAGUUAUAAUAGAUAm6ACACUAAUAUACAAGCUUGGGAAAUGAAGCCAUAUGUGGAAGUGGCCAUAGGAAAAGGAUACm6AGAGUAGAGUUUCAUGAACCUGAAACUUGGUGGAAAUUUGAUCCUGAAGAAUUAGAAAAGAGGAAUAAACAUGGUGUGUCUCGAAAGAAGAUUGCUCAGAUGUUGGAUCGUUAUGAAUAUCAAAUGUCCAUUUCUAUUGUAAUGAAUUCAGUGGAACCAUCACACAAAAGCACACAAAGACCUCCUCCYCCACAGGGGAGACAGAGGUGGGGAGGCUCUCUUGGCUCACAUAAUCGUGUCUGUGUCACAAAUAAUCAUUAAAUUAGCUAUUUUCAGCUAm6ACACAUUUGUUGUUGCACUUGAAAAAGAGUUAGUGAGCCUGUCUUGGAGUUUAAGUAGUUUCAAAUAAAAAAAGGCUACAGUGCCUCACAAAGGAUGUUCCCAGCAAGUUGUUUAAAUUCCCAGCAAGUUGUUAAAGUGUAAAUAAAAAUAUAUGAAAUUGUAUUUUAAAUGUUUUUAUAUUCUCUUGUUGUAAUACUCUUGGCUGUUAUGGAAGCACCUGAGUAAUAGAGUGGUGGGUAGGAGCUAGGAUGUUUUUCUACAAUCGAAUUUUAAACUAAUUUAUCUAUUUUAUAGACACUAUUGAACAGUUUUUUAAUAGUUCAUAUCUAAAUCUAACUUUUCAUAAAACUUUACGGUUUUUCCUUCACUACCUUAAAUAUGCAAGAAAUACUGACUUGGUAUAGGGUACCUUAGUUUUCUCUAUUCAUUAGACAGGUAAAAUUAUAUUUCAGCUGAUUGAUCUGUGUGACAAAAUUAUUUCUUAGCUAUAAUCAGCACAUCACUUAGUUCAAACAAAAUUCCCCAGCAAAUGUUAGAUAGUAGGUAUAUCAGUCACCUGGGGAGUUUUCUUCAUAAUAUGCAUAUUCAUCUUGUAAUGCAUACAUAGUUAUCAUCCUCCUUCUCAACCCAUCUCCCUAACCCCACAUGCUUGCCAGUUCUUGAAGGGAUAAAGUGAUUCUAAUAAUGUUUUACUUCUCUCUGUUCAAUUUAAUGUGAUAUAAUUCUAGUAUAAAAAUAUUUUGGACAGUUGCUUAACAUGGUCAUAAGAGGAUUUGU
Sequence (MODOMICS CODE ENCODING) GGCCUGGGUAACCGAGAGGUGACCGCCAUCUUGCGUACGGAGAGGUUCGUGUCUUCCUAAAAGAAGGUUUUAUUGGGAGGUAAAGGUCAAUGCGUAGGGGUAGAGUAAGAUGUCUUAUGGUGAAAUUGAAGGUAAAUUCUUGGGACCUAGAGAAGAAGUAACGAGUGAGCCACGCUGUAAAAAAUUGAAGUCAACCACAGAGUCGUAUGUUUUUCACAAUCAUAGUAAUGCUGAUUUUCACAGAAUCCAAGAGAAA2000000006ACUGGAAAUGAUUGGGUCCCUGUGACCAUCAUUGAUGUCAGAGG2000000006ACAUAGUUAUUUGCAGGAGAACAAAAUCAAAACUACAGAUUUGCAUAG2000000006ACCUUUGCAUGAUGAGAUGCCUGGUAAUAGACCAGAUGUUAUUGAAUCCAUUGAUUCACAGGUUUUACAGGAAGCACGUCCUCCAUUAGUAUCCGCAGACGAUGAGAUAUAUAGCACAAGUAAAGCAUUUAUAGGACCCAUUUACAAACCCCCUGAGAAAAAGAAACGUAAUGAAGGGAGGAAUGAGGCACAUGUUCUAAAUGGUAUAAAUGACAGAGGAGGACAAAAAGAGAAACAGAAAUUUAACUCUGAAAAAUCAGAGAUUGACAAUGAAUUAUUCCAGUUUUACAAAGAAAUUGAAGAGCUUGAAAAGGAAAAAGAUGGUUUUGAGAACAGUUGUAAAGAAUCUGAACCUUCUCAGGAACAAUUUGUUCCAUUUUAUGAGGGUCAUAAUAAUGGUCUCUUAAAACCUGAUGAAGAAAAGAAAGAUCUUAGUAAUAAAGCUAUGCCAUCACAUUGUGAUUAUCAGCAGA2000000006ACUUGGGGAAUGAGCCAGACAAAUAUCCCUGUAAUGG2000000006ACAAGUAAUACCUACAUUUUGUGACACUUCAUUUACUUCUUUCAGGCCUGAAUGGCAGUCAGUAUAUCCUUUUAUAGUGCCCUAUGGUCCCCCUCUUCCCAGUUUGA2000000006ACUAUCAUUUAAACAUUCAGAGAUUCAGUGGUCCACCAAAUCCACCAUCAAAUAUUUUCCAAGCCCAAGAUGACUCUCAGAUACAAAAUGGAUAUUAUGUAAAUAAUUGUCAUGUUAACUGGAAUUGCAUGACUUUUGAUCAGA2000000006ACAAUGAAUAUACUG2000000006ACUGUAGUGAGAAUAGGAGUAGUGUUCAUCCCUCUGGAAAUGGCUGCAGUAUGCAAGAUCGAUAUGUGAGUAAUGGUUUCUGUGAAGUCAGAGAAAGAUGCUGGAAAGAUCAUUGUAUGG2000000006ACAAGCAUAAUGGAACAGACAGGUUUGUGAACCAGCAGUUUCAAGAGGAAAAGUUAAAUAAAUUGCAGAAGUUACUUAUUCUUUUAAGAGGUCUGCCUGGUUCUGGGAAAACAACAUUGUCUCGAAUUCUGCUUGGUCAGAAUCGUGAUGGCAUUGUGUUCAGCACUGAUGACUAUUUUCACCAUCAAGAUGGGUACAGCAAAACAAGCUAUCGAUCAGGGAAGAUCUCCAGUUAUAAUAGAUA2000000006ACACUAAUAUACAAGCUUGGGAAAUGAAGCCAUAUGUGGAAGUGGCCAUAGGAAAAGGAUAC2000000006AGAGUAGAGUUUCAUGAACCUGAAACUUGGUGGAAAUUUGAUCCUGAAGAAUUAGAAAAGAGGAAUAAACAUGGUGUGUCUCGAAAGAAGAUUGCUCAGAUGUUGGAUCGUUAUGAAUAUCAAAUGUCCAUUUCUAUUGUAAUGAAUUCAGUGGAACCAUCACACAAAAGCACACAAAGACCUCCUCC2000000009UCCACAGGGGAGACAGAGGUGGGGAGGCUCUCUUGGCUCACAUAAUCGUGUCUGUGUCACAAAUAAUCAUUAAAUUAGCUAUUUUCAGCUA2000000006ACACAUUUGUUGUUGCACUUGAAAAAGAGUUAGUGAGCCUGUCUUGGAGUUUAAGUAGUUUCAAAUAAAAAAAGGCUACAGUGCCUCACAAAGGAUGUUCCCAGCAAGUUGUUUAAAUUCCCAGCAAGUUGUUAAAGUGUAAAUAAAAAUAUAUGAAAUUGUAUUUUAAAUGUUUUUAUAUUCUCUUGUUGUAAUACUCUUGGCUGUUAUGGAAGCACCUGAGUAAUAGAGUGGUGGGUAGGAGCUAGGAUGUUUUUCUACAAUCGAAUUUUAAACUAAUUUAUCUAUUUUAUAGACACUAUUGAACAGUUUUUUAAUAGUUCAUAUCUAAAUCUAACUUUUCAUAAAACUUUACGGUUUUUCCUUCACUACCUUAAAUAUGCAAGAAAUACUGACUUGGUAUAGGGUACCUUAGUUUUCUCUAUUCAUUAGACAGGUAAAAUUAUAUUUCAGCUGAUUGAUCUGUGUGACAAAAUUAUUUCUUAGCUAUAAUCAGCACAUCACUUAGUUCAAACAAAAUUCCCCAGCAAAUGUUAGAUAGUAGGUAUAUCAGUCACCUGGGGAGUUUUCUUCAUAAUAUGCAUAUUCAUCUUGUAAUGCAUACAUAGUUAUCAUCCUCCUUCUCAACCCAUCUCCCUAACCCCACAUGCUUGCCAGUUCUUGAAGGGAUAAAGUGAUUCUAAUAAUGUUUUACUUCUCUCUGUUCAAUUUAAUGUGAUAUAAUUCUAGUAUAAAAAUAUUUUGGACAGUUGCUUAACAUGGUCAUAAGAGGAUUUGU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 257 301 349 822 859 966 1110 1125 1245 1489 1551 1739 1830
Modification positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A Y m6A
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM