General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000351487
Gene ID:	ENSG00000169062
Gene Name:	UPF3A
Sequence (UNICHARACTER ENCODING)	GGAGAGUGCGGCAUGCGCUCGGAAAAGGAGGGGGCCGGAGGCCUUCGGGCGGCCGUUGCCGCGCGGGGCCCGAGCGGGAGGGAGAAGCUGUCGGCCCUAGAAGUGCAGUUCCACCGCGACUCGCAGCAGCAGGAGGCUGAGACGCCGCCAACUUCGUCCUCCGGUUGCGGGGGCGGUGCGGGCAAACCUCGCGAGGAGAAGAGGACGGCCCUGAGCAAGGUGGUCAPCCGCCGCCUGCCUCCGGGCCUCACCAAGGAGCAGCUGGAGGAGCAGCUGCGCCCGCUGCCAGCACACGACUACUUCGAGUUCUUCGCCGCCGACCUGAGUCUUUAUCCUCAUCUCUACUCAAGAGCAUACAUUAAUUUUAGGAAUCCUGAUGACAUCCUUCUUUUUAGAGAUCGUUUUGAUGGAUAUAUCUUCCUUGACAGCAAAGAUCCAGAAUAUAAGAAGUUUUUAGAAACCUACUGUGUGGAGGAAGAGAAGACCAGUGCCAACCCUGAGACUCUGCUGGGGGAGAUGGAGGCGAAGACAAGAGAGCUCAUUGCUAGAAGAACCACACCUCUUUUGGAAUAUAUUAAAAAUAGAAAAUUAGAAAAGCAGAGAAUUCGAGAAGAGAAGCGAGAAGAACGGAGGAGGAGAGAGUUAGAAAAGAAACGUUUGCGGGAAGAGGAAAAAAGAAGAAGAAGAGAAGAAGAAAGAUGCAAAAAAAAAGAGACAGAUAAACAGAAGAAAAUUGCAGAGAAAGAAGUAAGGAUUAAGCUUCUUAAGAAACCAGAAAAGGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAGGAGAGGAGAUUGAUACUGGAGGUGGCAAGCAGGAAUCCUGUGCCCCCGGUGCAGUCGUAAAAGCCAGGCCCAUGGAAGGCUCGCUGGAGGAGCCCCAGGAGACGUCACACAGCGGCAGUGAUAAAGAGCACAGGGAUGUGGAGAGAUCUCAAGAACAAGAAUCUGAAGCACAAAGAUACCAUGUGGAUGACGGCAGGAGGCACAGAGCUCACCACGAGCCUGAACGGCUUUCCAGAAGGAGUGAGGAUGAGCAGAGAUGGGGGAAAGGACCUGGCCAAGACAGAGGGAAGAAGGGGAGCCAGGACAGCGGGGCUCCGGGGGAGGCCAUGGAGAGACUGGGAAGAGCGCAGAGGUGUGACGACAGUCCAGCACCCAGAAAAGAGCGACUGGCAAACAAGGACCGGCCAGCCUUGCAGCUGUAUGAUCCAGGAGCUCGCUUCCGAGCGCGAGAGUGUGGCGGAAACAGGAGGAUCUGCAAGGCAGAAGGUUCGGGGЖCUGGUCCUGAGAAGAGGGAAGAGGCAGAGUGAGUCACUGCACGCACCUGGCCUCCAUGGACGAGCAAGGGCAUCCCAGAAACGUGUAAAUGACCCCGAGUGUGACUGGGAAGGAGAACUUAUUCCUUACCAGGAAACUGGAAGCUAAAAAUACAGAGGGUGACGUAGAAACACGCAGAAACCAUUCUAAAGAAAGUAGUGAUCUUGUAUUAAAUUGAGCAGAAUUCUCACAGAUUUUACCAUUCCUGUUAUAAACUAGUAUUUGUUGUUUAGCCAAAACAGAAAAUGAUUUCCACUGGACAGUAGAAAAAUAUGUGUAAAAUAGGGAAGAAAGUUAGUAUUGGAUCAGUGUGAGUCCUGAAGCACUUUCAGUGCUGUGAGAACGACAPCCACUUUGGGUUUCAUUCGUUUGUAAGCAGAGGAGCUGUCAGUCACUCGUGCUUCUCGGUGGCCUCUGAGCCAUGGUGUCGAGUGAAGAGUAGUUCUUGUUUGUUACAACCUUUGUGAGUCAGCCAUGCCCGCAAAGCGUGCUGUGUUUUAGUCCUGGUAGGAAUAUUUAUCAGAGUUCACACUAUAUAAAACCCAACAGCUUCAACUAUUGCCCUUUCAACAGUUUUGCCACUGACCGGAUAGAAACGGUUUCAGUCUCUGGAUGGAUGUGUUUGUGGUUUGUAACCAUUACGGUUUAAACCAUGGUUUAAGAAUUUGCCCAAAUAACAGAAAUUUUGUUCGGGAAGGGAUAAACUAGAUAUAGCAUACAGAGCCUGUUUUUGAGUUUUAGAUACUPUAUUUGUAAAUAACUUAAAAUAGCUUUCUGAAACCGUGCAUUCUGUAGUUUCUUCCUUUCAGUGAAAUUGCUAAAUGUCAAUGUAUUUUUGGCACUGCGAUUUUAACCAUUUAUUAAAUAAAAAUUUUGUUAAAGAA
Sequence (SHORT NAMES ENCODING)	GGAGAGUGCGGCAUGCGCUCGGAAAAGGAGGGGGCCGGAGGCCUUCGGGCGGCCGUUGCCGCGCGGGGCCCGAGCGGGAGGGAGAAGCUGUCGGCCCUAGAAGUGCAGUUCCACCGCGACUCGCAGCAGCAGGAGGCUGAGACGCCGCCAACUUCGUCCUCCGGUUGCGGGGGCGGUGCGGGCAAACCUCGCGAGGAGAAGAGGACGGCCCUGAGCAAGGUGGUCAYCCGCCGCCUGCCUCCGGGCCUCACCAAGGAGCAGCUGGAGGAGCAGCUGCGCCCGCUGCCAGCACACGACUACUUCGAGUUCUUCGCCGCCGACCUGAGUCUUUAUCCUCAUCUCUACUCAAGAGCAUACAUUAAUUUUAGGAAUCCUGAUGACAUCCUUCUUUUUAGAGAUCGUUUUGAUGGAUAUAUCUUCCUUGACAGCAAAGAUCCAGAAUAUAAGAAGUUUUUAGAAACCUACUGUGUGGAGGAAGAGAAGACCAGUGCCAACCCUGAGACUCUGCUGGGGGAGAUGGAGGCGAAGACAAGAGAGCUCAUUGCUAGAAGAACCACACCUCUUUUGGAAUAUAUUAAAAAUAGAAAAUUAGAAAAGCAGAGAAUUCGAGAAGAGAAGCGAGAAGAACGGAGGAGGAGAGAGUUAGAAAAGAAACGUUUGCGGGAAGAGGAAAAAAGAAGAAGAAGAGAAGAAGAAAGAUGCAAAAAAAAAGAGACAGAUAAACAGAAGAAAAUUGCAGAGAAAGAAGUAAGGAUUAAGCUUCUUAAGAAACCAGAAAAGGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAGGAGAGGAGAUUGAUACUGGAGGUGGCAAGCAGGAAUCCUGUGCCCCCGGUGCAGUCGUAAAAGCCAGGCCCAUGGAAGGCUCGCUGGAGGAGCCCCAGGAGACGUCACACAGCGGCAGUGAUAAAGAGCACAGGGAUGUGGAGAGAUCUCAAGAACAAGAAUCUGAAGCACAAAGAUACCAUGUGGAUGACGGCAGGAGGCACAGAGCUCACCACGAGCCUGAACGGCUUUCCAGAAGGAGUGAGGAUGAGCAGAGAUGGGGGAAAGGACCUGGCCAAGACAGAGGGAAGAAGGGGAGCCAGGACAGCGGGGCUCCGGGGGAGGCCAUGGAGAGACUGGGAAGAGCGCAGAGGUGUGACGACAGUCCAGCACCCAGAAAAGAGCGACUGGCAAACAAGGACCGGCCAGCCUUGCAGCUGUAUGAUCCAGGAGCUCGCUUCCGAGCGCGAGAGUGUGGCGGAAACAGGAGGAUCUGCAAGGCAGAAGGUUCGGGGm6ACUGGUCCUGAGAAGAGGGAAGAGGCAGAGUGAGUCACUGCACGCACCUGGCCUCCAUGGACGAGCAAGGGCAUCCCAGAAACGUGUAAAUGACCCCGAGUGUGACUGGGAAGGAGAACUUAUUCCUUACCAGGAAACUGGAAGCUAAAAAUACAGAGGGUGACGUAGAAACACGCAGAAACCAUUCUAAAGAAAGUAGUGAUCUUGUAUUAAAUUGAGCAGAAUUCUCACAGAUUUUACCAUUCCUGUUAUAAACUAGUAUUUGUUGUUUAGCCAAAACAGAAAAUGAUUUCCACUGGACAGUAGAAAAAUAUGUGUAAAAUAGGGAAGAAAGUUAGUAUUGGAUCAGUGUGAGUCCUGAAGCACUUUCAGUGCUGUGAGAACGACAYCCACUUUGGGUUUCAUUCGUUUGUAAGCAGAGGAGCUGUCAGUCACUCGUGCUUCUCGGUGGCCUCUGAGCCAUGGUGUCGAGUGAAGAGUAGUUCUUGUUUGUUACAACCUUUGUGAGUCAGCCAUGCCCGCAAAGCGUGCUGUGUUUUAGUCCUGGUAGGAAUAUUUAUCAGAGUUCACACUAUAUAAAACCCAACAGCUUCAACUAUUGCCCUUUCAACAGUUUUGCCACUGACCGGAUAGAAACGGUUUCAGUCUCUGGAUGGAUGUGUUUGUGGUUUGUAACCAUUACGGUUUAAACCAUGGUUUAAGAAUUUGCCCAAAUAACAGAAAUUUUGUUCGGGAAGGGAUAAACUAGAUAUAGCAUACAGAGCCUGUUUUUGAGUUUUAGAUACUYUAUUUGUAAAUAACUUAAAAUAGCUUUCUGAAACCGUGCAUUCUGUAGUUUCUUCCUUUCAGUGAAAUUGCUAAAUGUCAAUGUAUUUUUGGCACUGCGAUUUUAACCAUUUAUUAAAUAAAAAUUUUGUUAAAGAA
Sequence (MODOMICS CODE ENCODING)	GGAGAGUGCGGCAUGCGCUCGGAAAAGGAGGGGGCCGGAGGCCUUCGGGCGGCCGUUGCCGCGCGGGGCCCGAGCGGGAGGGAGAAGCUGUCGGCCCUAGAAGUGCAGUUCCACCGCGACUCGCAGCAGCAGGAGGCUGAGACGCCGCCAACUUCGUCCUCCGGUUGCGGGGGCGGUGCGGGCAAACCUCGCGAGGAGAAGAGGACGGCCCUGAGCAAGGUGGUCA2000000009UCCGCCGCCUGCCUCCGGGCCUCACCAAGGAGCAGCUGGAGGAGCAGCUGCGCCCGCUGCCAGCACACGACUACUUCGAGUUCUUCGCCGCCGACCUGAGUCUUUAUCCUCAUCUCUACUCAAGAGCAUACAUUAAUUUUAGGAAUCCUGAUGACAUCCUUCUUUUUAGAGAUCGUUUUGAUGGAUAUAUCUUCCUUGACAGCAAAGAUCCAGAAUAUAAGAAGUUUUUAGAAACCUACUGUGUGGAGGAAGAGAAGACCAGUGCCAACCCUGAGACUCUGCUGGGGGAGAUGGAGGCGAAGACAAGAGAGCUCAUUGCUAGAAGAACCACACCUCUUUUGGAAUAUAUUAAAAAUAGAAAAUUAGAAAAGCAGAGAAUUCGAGAAGAGAAGCGAGAAGAACGGAGGAGGAGAGAGUUAGAAAAGAAACGUUUGCGGGAAGAGGAAAAAAGAAGAAGAAGAGAAGAAGAAAGAUGCAAAAAAAAAGAGACAGAUAAACAGAAGAAAAUUGCAGAGAAAGAAGUAAGGAUUAAGCUUCUUAAGAAACCAGAAAAGGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAGGAGAGGAGAUUGAUACUGGAGGUGGCAAGCAGGAAUCCUGUGCCCCCGGUGCAGUCGUAAAAGCCAGGCCCAUGGAAGGCUCGCUGGAGGAGCCCCAGGAGACGUCACACAGCGGCAGUGAUAAAGAGCACAGGGAUGUGGAGAGAUCUCAAGAACAAGAAUCUGAAGCACAAAGAUACCAUGUGGAUGACGGCAGGAGGCACAGAGCUCACCACGAGCCUGAACGGCUUUCCAGAAGGAGUGAGGAUGAGCAGAGAUGGGGGAAAGGACCUGGCCAAGACAGAGGGAAGAAGGGGAGCCAGGACAGCGGGGCUCCGGGGGAGGCCAUGGAGAGACUGGGAAGAGCGCAGAGGUGUGACGACAGUCCAGCACCCAGAAAAGAGCGACUGGCAAACAAGGACCGGCCAGCCUUGCAGCUGUAUGAUCCAGGAGCUCGCUUCCGAGCGCGAGAGUGUGGCGGAAACAGGAGGAUCUGCAAGGCAGAAGGUUCGGGG2000000006ACUGGUCCUGAGAAGAGGGAAGAGGCAGAGUGAGUCACUGCACGCACCUGGCCUCCAUGGACGAGCAAGGGCAUCCCAGAAACGUGUAAAUGACCCCGAGUGUGACUGGGAAGGAGAACUUAUUCCUUACCAGGAAACUGGAAGCUAAAAAUACAGAGGGUGACGUAGAAACACGCAGAAACCAUUCUAAAGAAAGUAGUGAUCUUGUAUUAAAUUGAGCAGAAUUCUCACAGAUUUUACCAUUCCUGUUAUAAACUAGUAUUUGUUGUUUAGCCAAAACAGAAAAUGAUUUCCACUGGACAGUAGAAAAAUAUGUGUAAAAUAGGGAAGAAAGUUAGUAUUGGAUCAGUGUGAGUCCUGAAGCACUUUCAGUGCUGUGAGAACGACA2000000009UCCACUUUGGGUUUCAUUCGUUUGUAAGCAGAGGAGCUGUCAGUCACUCGUGCUUCUCGGUGGCCUCUGAGCCAUGGUGUCGAGUGAAGAGUAGUUCUUGUUUGUUACAACCUUUGUGAGUCAGCCAUGCCCGCAAAGCGUGCUGUGUUUUAGUCCUGGUAGGAAUAUUUAUCAGAGUUCACACUAUAUAAAACCCAACAGCUUCAACUAUUGCCCUUUCAACAGUUUUGCCACUGACCGGAUAGAAACGGUUUCAGUCUCUGGAUGGAUGUGUUUGUGGUUUGUAACCAUUACGGUUUAAACCAUGGUUUAAGAAUUUGCCCAAAUAACAGAAAUUUUGUUCGGGAAGGGAUAAACUAGAUAUAGCAUACAGAGCCUGUUUUUGAGUUUUAGAUACU2000000009UUAUUUGUAAAUAACUUAAAAUAGCUUUCUGAAACCGUGCAUUCUGUAGUUUCUUCCUUUCAGUGAAAUUGCUAAAUGUCAAUGUAUUUUUGGCACUGCGAUUUUAACCAUUUAUUAAAUAAAAAUUUUGUUAAAGAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	227	1312	1700	2098
Modification Positions	Y	m6A	Y	Y
Genomic Coordinates	13:114282028:+	13:114304885:+	13:114305273:+	13:114305671:+
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 XWZVGdLC6gGJ	jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ XWZVGdLC6gGJ S9vNeQQYrhac