Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000637537
Gene ID: ENSG00000102805
Gene Name: CLN5
Sequence (UNICHARACTER ENCODING) GGAAGUACUGGGUGCAGCCUGAUGGCGCAGGAGGUAGACACGGCACAGGGCGCCGAGAUGCGGCGGGGCGCGGGCGCGGCUCGGGGACGCGCUUCCUGGUGCUGGGCCCUGGCGCUGCUUUGGCUCGCGGUGGUUCCGGGCUGGUCCCGGGUCUCGGGCAUCCCCUCCCGGCGCCACUGGCCGGUGCCCUACAAGCGCUUUGACUUCCGUCCAAAACCUGAUCCUUAUUGUCAAGCUAAGUAUACUUUCUGUCCAACUGGCUCACCUAUCCCAGUUAUGGAGGGUGAUGAUGACAUUGAAGUUUUUCGAUUACAAGCCCCAGUAUGGGAAUUUAAAUAUGGAGACCUCCUGGGACACUUGAAAAUUAUGCAUGAUGCCAUUGGAUUCAGAAGUACAUUAACUGGCAAGAACUACACAAUGGAAUGGUAUGAЖCUUUUCCAACUUGGCAACUGUACAUUUCCCCAUCUCCGACCUGAAAUGGAUGCCCCUUUCUGGUGUAAUCAAGGCGCUGCCUGCUUUUUUGAGGGAAUUGAUGAUGUUCACUGGAAGGAAAAUGGGACAUUAGUUCAAGUAGCAACUAUAUCAGAUGGAGAAACUGAGGCACAGAGAGGUUAAAGUUACACAGCUUAGUAAGUGGGACUCCAACCCUGGCAGUUACGCCCCAUUGCCCAUUCUCCUAACUACUUUGAUACAUUGCCUCCCAAAAUGUAUAUGAUCUUAUAUUUGAGACCCUCUUGAGCAGUUUAAAUAUUUUAUCUUUGAGAUUUUUUUCUUCUUUUGGAUGUAUUGGAAAGUUGCUGAAAGUUGGAAUUGUGUUGCAAGUGCUGCAUUGUUGGUUAGUAAUGAAAAGAGUUCAGCAAUCCUUUCAUUGGUAACUCCUUAUGUGACUUGGGUCACAUUUUAUAUCUUAUUGGCCCGUUGCCUCAUGUGCAAAAUGGAGACAAUAUACCAUAGCAUUUGAGAAGUAAGGAGCUUGUCCAUAUGAUUUAUGAAGCAUUACAUUAUAAAUUGCUGUUCCCCAGAACAGUAGAAACAUCUGAAAUGAAAGCACUGUUGUGACAAUAAUUAUUCAGUGAACCCCAGGACUUGAGGAAGUAAUCAUGCUUCCUAUUUGUAUAGCUCUUUACAAAUGAUUUGGAGGUAUGUUAACUCACGGUUCAGUGGAGAGGAUAAGAUACUCAUUCUCUGCAAAUAAGGAAUUGAGGCUCAGCCAGGUAACAUGACUUACUUGCCUCUCAAGGUCAAAGAGCUGGAUGUAGCAGAAUCAGGAAUAAAACUGAGGUCUUUUAAAUGUAACAAGGAUCUGUUAGCCGAAUGCACCAUGUUGUUUUCUAAUAUUUCCUGCUACUUUCUAAUCAAUGUGCCUUAAACCAUACCAACAAUACAAAAGUCCAUCAUUAGCGGUUCUUUCUUUCAUUCCAGGCCAGUUCACACCUUUCCCCAUUUCCACCUACAUCGUUAUCUGAAAAUCCUUCCUUCUGACAUAAAGUCAAUGAUCAUAUGAAUAAGUGAUCACUAUUUUUUGUAAAAUAGUUCAAAAUAUGCCAGUACUUAAAUCUUUUAAGUCAUUUAUUUGCCUUGUGAAUAAUCCUGUGAUUGACAAAAUAGUGUUUUGAAGCAUUCUUGUCUCAUAAGGAUAGUGGUGGCAUUUGAAAGUUGAAGAAUGCUAAGAACAGUAUCCCCAGUUCUAAUACAACAGGCUUUAUUCUGUUCUACAAUUUUAAUUCCAUAAAAUUGAUAAAGGCAGUCACUCUAUUCAUUUUACAGAACAUGAAGUAUUUAUUUUAUGGACUCAAGUUGGAGUAACCAAAGAGGUUUGCACACAGUGACAGGAUGCAGUGUUUGGGGCCCAGUUCUAUUAGGCAUUAUAAAUGCCCAAGAUGAGAGUUGUAACCAUGCAGAGUAGUGUUUUCUGAAUAUUUGGAAAGAUUCUUCUGGUCUAGUACAAGAUGGUAGAAGAGAGGGUUAGCCAUCCUGGAGUAUGAACUCGGCCUAAAACAUUUCCAGUUUAGUUGAUUUGUUGGAAGGACUUAACGUGGCAGGUGGAGAGGUCAUCAGCAGCAUCCCAGCAACUCCAAGUACAGGGAAGAAAGAAACGUACCAAACACACAAGGUGGAUGGGGUAUGGUGCUUGUUCUCAUAACAGUAAUAGCCAGCCUUCUAGAGCAGUGGCUCCUCAGGCAGCCAUUCAUACUUUAUGUGUAGCAUGCUUUGCAACAGUGAAGCUCCACAUUUCCCACACCUCCAUUUUCCUUACACUGUCUUUGCCCAUUCUGCUUUUCCUCUUUCGCAAUUCUUUUUGUGCUUUCCUUUUCUCUUUUGCCUCUGAAUCCAAGAUUUGGUGAGUUGGGUAGAGAAAGAGAGCUUCUGCAUUUGUAUAAUUUCGCUUUGACUAUAGCUUAAAUGAUUAUAGAAUUAGUAUGUAAGAUGACUUCUCCUUAUACACCUAUUAUAUCUAAUGUUUAUAAUUCAGAAAUAUCUUGUGCCUUGAAGAAUGGAAUAAAAUUGGCUGAGCUUGGA
Sequence (SHORT NAMES ENCODING) GGAAGUACUGGGUGCAGCCUGAUGGCGCAGGAGGUAGACACGGCACAGGGCGCCGAGAUGCGGCGGGGCGCGGGCGCGGCUCGGGGACGCGCUUCCUGGUGCUGGGCCCUGGCGCUGCUUUGGCUCGCGGUGGUUCCGGGCUGGUCCCGGGUCUCGGGCAUCCCCUCCCGGCGCCACUGGCCGGUGCCCUACAAGCGCUUUGACUUCCGUCCAAAACCUGAUCCUUAUUGUCAAGCUAAGUAUACUUUCUGUCCAACUGGCUCACCUAUCCCAGUUAUGGAGGGUGAUGAUGACAUUGAAGUUUUUCGAUUACAAGCCCCAGUAUGGGAAUUUAAAUAUGGAGACCUCCUGGGACACUUGAAAAUUAUGCAUGAUGCCAUUGGAUUCAGAAGUACAUUAACUGGCAAGAACUACACAAUGGAAUGGUAUGAm6ACUUUUCCAACUUGGCAACUGUACAUUUCCCCAUCUCCGACCUGAAAUGGAUGCCCCUUUCUGGUGUAAUCAAGGCGCUGCCUGCUUUUUUGAGGGAAUUGAUGAUGUUCACUGGAAGGAAAAUGGGACAUUAGUUCAAGUAGCAACUAUAUCAGAUGGAGAAACUGAGGCACAGAGAGGUUAAAGUUACACAGCUUAGUAAGUGGGACUCCAACCCUGGCAGUUACGCCCCAUUGCCCAUUCUCCUAACUACUUUGAUACAUUGCCUCCCAAAAUGUAUAUGAUCUUAUAUUUGAGACCCUCUUGAGCAGUUUAAAUAUUUUAUCUUUGAGAUUUUUUUCUUCUUUUGGAUGUAUUGGAAAGUUGCUGAAAGUUGGAAUUGUGUUGCAAGUGCUGCAUUGUUGGUUAGUAAUGAAAAGAGUUCAGCAAUCCUUUCAUUGGUAACUCCUUAUGUGACUUGGGUCACAUUUUAUAUCUUAUUGGCCCGUUGCCUCAUGUGCAAAAUGGAGACAAUAUACCAUAGCAUUUGAGAAGUAAGGAGCUUGUCCAUAUGAUUUAUGAAGCAUUACAUUAUAAAUUGCUGUUCCCCAGAACAGUAGAAACAUCUGAAAUGAAAGCACUGUUGUGACAAUAAUUAUUCAGUGAACCCCAGGACUUGAGGAAGUAAUCAUGCUUCCUAUUUGUAUAGCUCUUUACAAAUGAUUUGGAGGUAUGUUAACUCACGGUUCAGUGGAGAGGAUAAGAUACUCAUUCUCUGCAAAUAAGGAAUUGAGGCUCAGCCAGGUAACAUGACUUACUUGCCUCUCAAGGUCAAAGAGCUGGAUGUAGCAGAAUCAGGAAUAAAACUGAGGUCUUUUAAAUGUAACAAGGAUCUGUUAGCCGAAUGCACCAUGUUGUUUUCUAAUAUUUCCUGCUACUUUCUAAUCAAUGUGCCUUAAACCAUACCAACAAUACAAAAGUCCAUCAUUAGCGGUUCUUUCUUUCAUUCCAGGCCAGUUCACACCUUUCCCCAUUUCCACCUACAUCGUUAUCUGAAAAUCCUUCCUUCUGACAUAAAGUCAAUGAUCAUAUGAAUAAGUGAUCACUAUUUUUUGUAAAAUAGUUCAAAAUAUGCCAGUACUUAAAUCUUUUAAGUCAUUUAUUUGCCUUGUGAAUAAUCCUGUGAUUGACAAAAUAGUGUUUUGAAGCAUUCUUGUCUCAUAAGGAUAGUGGUGGCAUUUGAAAGUUGAAGAAUGCUAAGAACAGUAUCCCCAGUUCUAAUACAACAGGCUUUAUUCUGUUCUACAAUUUUAAUUCCAUAAAAUUGAUAAAGGCAGUCACUCUAUUCAUUUUACAGAACAUGAAGUAUUUAUUUUAUGGACUCAAGUUGGAGUAACCAAAGAGGUUUGCACACAGUGACAGGAUGCAGUGUUUGGGGCCCAGUUCUAUUAGGCAUUAUAAAUGCCCAAGAUGAGAGUUGUAACCAUGCAGAGUAGUGUUUUCUGAAUAUUUGGAAAGAUUCUUCUGGUCUAGUACAAGAUGGUAGAAGAGAGGGUUAGCCAUCCUGGAGUAUGAACUCGGCCUAAAACAUUUCCAGUUUAGUUGAUUUGUUGGAAGGACUUAACGUGGCAGGUGGAGAGGUCAUCAGCAGCAUCCCAGCAACUCCAAGUACAGGGAAGAAAGAAACGUACCAAACACACAAGGUGGAUGGGGUAUGGUGCUUGUUCUCAUAACAGUAAUAGCCAGCCUUCUAGAGCAGUGGCUCCUCAGGCAGCCAUUCAUACUUUAUGUGUAGCAUGCUUUGCAACAGUGAAGCUCCACAUUUCCCACACCUCCAUUUUCCUUACACUGUCUUUGCCCAUUCUGCUUUUCCUCUUUCGCAAUUCUUUUUGUGCUUUCCUUUUCUCUUUUGCCUCUGAAUCCAAGAUUUGGUGAGUUGGGUAGAGAAAGAGAGCUUCUGCAUUUGUAUAAUUUCGCUUUGACUAUAGCUUAAAUGAUUAUAGAAUUAGUAUGUAAGAUGACUUCUCCUUAUACACCUAUUAUAUCUAAUGUUUAUAAUUCAGAAAUAUCUUGUGCCUUGAAGAAUGGAAUAAAAUUGGCUGAGCUUGGA
Sequence (MODOMICS CODE ENCODING) GGAAGUACUGGGUGCAGCCUGAUGGCGCAGGAGGUAGACACGGCACAGGGCGCCGAGAUGCGGCGGGGCGCGGGCGCGGCUCGGGGACGCGCUUCCUGGUGCUGGGCCCUGGCGCUGCUUUGGCUCGCGGUGGUUCCGGGCUGGUCCCGGGUCUCGGGCAUCCCCUCCCGGCGCCACUGGCCGGUGCCCUACAAGCGCUUUGACUUCCGUCCAAAACCUGAUCCUUAUUGUCAAGCUAAGUAUACUUUCUGUCCAACUGGCUCACCUAUCCCAGUUAUGGAGGGUGAUGAUGACAUUGAAGUUUUUCGAUUACAAGCCCCAGUAUGGGAAUUUAAAUAUGGAGACCUCCUGGGACACUUGAAAAUUAUGCAUGAUGCCAUUGGAUUCAGAAGUACAUUAACUGGCAAGAACUACACAAUGGAAUGGUAUGA2000000006ACUUUUCCAACUUGGCAACUGUACAUUUCCCCAUCUCCGACCUGAAAUGGAUGCCCCUUUCUGGUGUAAUCAAGGCGCUGCCUGCUUUUUUGAGGGAAUUGAUGAUGUUCACUGGAAGGAAAAUGGGACAUUAGUUCAAGUAGCAACUAUAUCAGAUGGAGAAACUGAGGCACAGAGAGGUUAAAGUUACACAGCUUAGUAAGUGGGACUCCAACCCUGGCAGUUACGCCCCAUUGCCCAUUCUCCUAACUACUUUGAUACAUUGCCUCCCAAAAUGUAUAUGAUCUUAUAUUUGAGACCCUCUUGAGCAGUUUAAAUAUUUUAUCUUUGAGAUUUUUUUCUUCUUUUGGAUGUAUUGGAAAGUUGCUGAAAGUUGGAAUUGUGUUGCAAGUGCUGCAUUGUUGGUUAGUAAUGAAAAGAGUUCAGCAAUCCUUUCAUUGGUAACUCCUUAUGUGACUUGGGUCACAUUUUAUAUCUUAUUGGCCCGUUGCCUCAUGUGCAAAAUGGAGACAAUAUACCAUAGCAUUUGAGAAGUAAGGAGCUUGUCCAUAUGAUUUAUGAAGCAUUACAUUAUAAAUUGCUGUUCCCCAGAACAGUAGAAACAUCUGAAAUGAAAGCACUGUUGUGACAAUAAUUAUUCAGUGAACCCCAGGACUUGAGGAAGUAAUCAUGCUUCCUAUUUGUAUAGCUCUUUACAAAUGAUUUGGAGGUAUGUUAACUCACGGUUCAGUGGAGAGGAUAAGAUACUCAUUCUCUGCAAAUAAGGAAUUGAGGCUCAGCCAGGUAACAUGACUUACUUGCCUCUCAAGGUCAAAGAGCUGGAUGUAGCAGAAUCAGGAAUAAAACUGAGGUCUUUUAAAUGUAACAAGGAUCUGUUAGCCGAAUGCACCAUGUUGUUUUCUAAUAUUUCCUGCUACUUUCUAAUCAAUGUGCCUUAAACCAUACCAACAAUACAAAAGUCCAUCAUUAGCGGUUCUUUCUUUCAUUCCAGGCCAGUUCACACCUUUCCCCAUUUCCACCUACAUCGUUAUCUGAAAAUCCUUCCUUCUGACAUAAAGUCAAUGAUCAUAUGAAUAAGUGAUCACUAUUUUUUGUAAAAUAGUUCAAAAUAUGCCAGUACUUAAAUCUUUUAAGUCAUUUAUUUGCCUUGUGAAUAAUCCUGUGAUUGACAAAAUAGUGUUUUGAAGCAUUCUUGUCUCAUAAGGAUAGUGGUGGCAUUUGAAAGUUGAAGAAUGCUAAGAACAGUAUCCCCAGUUCUAAUACAACAGGCUUUAUUCUGUUCUACAAUUUUAAUUCCAUAAAAUUGAUAAAGGCAGUCACUCUAUUCAUUUUACAGAACAUGAAGUAUUUAUUUUAUGGACUCAAGUUGGAGUAACCAAAGAGGUUUGCACACAGUGACAGGAUGCAGUGUUUGGGGCCCAGUUCUAUUAGGCAUUAUAAAUGCCCAAGAUGAGAGUUGUAACCAUGCAGAGUAGUGUUUUCUGAAUAUUUGGAAAGAUUCUUCUGGUCUAGUACAAGAUGGUAGAAGAGAGGGUUAGCCAUCCUGGAGUAUGAACUCGGCCUAAAACAUUUCCAGUUUAGUUGAUUUGUUGGAAGGACUUAACGUGGCAGGUGGAGAGGUCAUCAGCAGCAUCCCAGCAACUCCAAGUACAGGGAAGAAAGAAACGUACCAAACACACAAGGUGGAUGGGGUAUGGUGCUUGUUCUCAUAACAGUAAUAGCCAGCCUUCUAGAGCAGUGGCUCCUCAGGCAGCCAUUCAUACUUUAUGUGUAGCAUGCUUUGCAACAGUGAAGCUCCACAUUUCCCACACCUCCAUUUUCCUUACACUGUCUUUGCCCAUUCUGCUUUUCCUCUUUCGCAAUUCUUUUUGUGCUUUCCUUUUCUCUUUUGCCUCUGAAUCCAAGAUUUGGUGAGUUGGGUAGAGAAAGAGAGCUUCUGCAUUUGUAUAAUUUCGCUUUGACUAUAGCUUAAAUGAUUAUAGAAUUAGUAUGUAAGAUGACUUCUCCUUAUACACCUAUUAUAUCUAAUGUUUAUAAUUCAGAAAUAUCUUGUGCCUUGAAGAAUGGAAUAAAAUUGGCUGAGCUUGGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 432
Modification Positions m6A
Genomic Coordinates 13:76995973:+
Level of Experimental Evidence 3
Level of Experimental Reliability 3
Source Sci-ModoM
EUFIDs 4HMi5ykupT9V
5aTkEfEpX8Xm
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
JkWoGWVwjNda
Yfn77uLS5tv8