Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000466868
Gene ID: ENSG00000102543
Gene Name: CDADC1
Sequence (UNICHARACTER ENCODING) GCUGAGAGGAGGCGAGAGGCGGGGGCGCUAGGGCCGAGAUCAUGUCUGACUGGGAGAGGUUUCCUUGGCAGCAGAGGACGCUAGGUUUGGGAUGAAAGAAGCUGGGCAGAUGCAAAAUCUGGAGAGCGCGAGGGCCGGGCGGUCAGUCAGCACCCAGACUGGCAGCAUGACCGGUCAGAUACCAAGGCUUUCUAAAGUCAACCUUUUCACUCUGCUCAGCCUCUGGAUGGAGCUCUUUCCAGCAGAAGCCCAGCGGCAAAAAUCUCAGAAAAAUGAAGAGGGAAAGCAUGGACCCUUAGGAGAUAAUGAAGAGAGGACCAGAGUAUCUACUGACAAAAGACAGAAAACCAUGUUCUGCUUGUUUGAAAAUGAUUGUAAAUGCUGGAGUUAACCGAAUUUCAUACUGGCCUGCUGAUCCAGAAAUAAGUUUGCUUACGGAGGCUUCUAGUUCUGAAGAUGCAAAGUUAGAUGCCAAAGCAGUGGAAAGAUUGAAGUCAAЖCAGUCGGGCCCAUGUGUGUGUCUUACUUCAACCUUUGGUGUGUUAUAUGGUGCAGUUUGUAGAGGAGACCUCUUACAAAUGUGЖCUPUAUUCAAAAAAUUACAAAAACAUUGCCGGAUGCUAЖCACUGACUUUUAUUAUGAAUGUAAЖCAAGAAAGAAUAAAAGAAUAUGAAAUGUUA
Sequence (SHORT NAMES ENCODING) GCUGAGAGGAGGCGAGAGGCGGGGGCGCUAGGGCCGAGAUCAUGUCUGACUGGGAGAGGUUUCCUUGGCAGCAGAGGACGCUAGGUUUGGGAUGAAAGAAGCUGGGCAGAUGCAAAAUCUGGAGAGCGCGAGGGCCGGGCGGUCAGUCAGCACCCAGACUGGCAGCAUGACCGGUCAGAUACCAAGGCUUUCUAAAGUCAACCUUUUCACUCUGCUCAGCCUCUGGAUGGAGCUCUUUCCAGCAGAAGCCCAGCGGCAAAAAUCUCAGAAAAAUGAAGAGGGAAAGCAUGGACCCUUAGGAGAUAAUGAAGAGAGGACCAGAGUAUCUACUGACAAAAGACAGAAAACCAUGUUCUGCUUGUUUGAAAAUGAUUGUAAAUGCUGGAGUUAACCGAAUUUCAUACUGGCCUGCUGAUCCAGAAAUAAGUUUGCUUACGGAGGCUUCUAGUUCUGAAGAUGCAAAGUUAGAUGCCAAAGCAGUGGAAAGAUUGAAGUCAAm6ACAGUCGGGCCCAUGUGUGUGUCUUACUUCAACCUUUGGUGUGUUAUAUGGUGCAGUUUGUAGAGGAGACCUCUUACAAAUGUGm6ACUYUAUUCAAAAAAUUACAAAAACAUUGCCGGAUGCUAm6ACACUGACUUUUAUUAUGAAUGUAAm6ACAAGAAAGAAUAAAAGAAUAUGAAAUGUUA
Sequence (MODOMICS CODE ENCODING) GCUGAGAGGAGGCGAGAGGCGGGGGCGCUAGGGCCGAGAUCAUGUCUGACUGGGAGAGGUUUCCUUGGCAGCAGAGGACGCUAGGUUUGGGAUGAAAGAAGCUGGGCAGAUGCAAAAUCUGGAGAGCGCGAGGGCCGGGCGGUCAGUCAGCACCCAGACUGGCAGCAUGACCGGUCAGAUACCAAGGCUUUCUAAAGUCAACCUUUUCACUCUGCUCAGCCUCUGGAUGGAGCUCUUUCCAGCAGAAGCCCAGCGGCAAAAAUCUCAGAAAAAUGAAGAGGGAAAGCAUGGACCCUUAGGAGAUAAUGAAGAGAGGACCAGAGUAUCUACUGACAAAAGACAGAAAACCAUGUUCUGCUUGUUUGAAAAUGAUUGUAAAUGCUGGAGUUAACCGAAUUUCAUACUGGCCUGCUGAUCCAGAAAUAAGUUUGCUUACGGAGGCUUCUAGUUCUGAAGAUGCAAAGUUAGAUGCCAAAGCAGUGGAAAGAUUGAAGUCAA2000000006ACAGUCGGGCCCAUGUGUGUGUCUUACUUCAACCUUUGGUGUGUUAUAUGGUGCAGUUUGUAGAGGAGACCUCUUACAAAUGUG2000000006ACU2000000009UUAUUCAAAAAAUUACAAAAACAUUGCCGGAUGCUA2000000006ACACUGACUUUUAUUAUGAAUGUAA2000000006ACAAGAAAGAAUAAAAGAAUAUGAAAUGUUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 499 583 586 622 647
Modification Positions m6A m6A Y m6A m6A
Genomic Coordinates 13:49267607:+ 13:49267691:+ 13:49267694:+ 13:49267730:+ 13:49267755:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8