Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000460338
Gene ID: ENSG00000134901
Gene Name: POGLUT2
Sequence (UNICHARACTER ENCODING) GCGGUUCUCGGCCGGGACAGCAGAACGCCAGGGGACCCUCACCUGGGCGCGCCGGGGCACGGGCUUUGAUUGUCCUGGGGUCGCGGAGACCCGCGCGCCUGCCCUGCACGCCGGGCGGCAACCUUUGCAGUCGCGUUGGCUGCUGCGAUCGGCCGGCGGGUCCCUGCCGAAGGCUCGGCUGCUUCUGUCCACCUCUUACACUUCUUCAUUUAUCGGUGGAUCAUUUCGAGAGUCCGUCUUGUAAAUGUUUGGCACUUUGCUACUPUAUUGCUUCUUUCUGGCGACAGUUCCAGCACUCGCCGAGACCGGCGGAGAAAGGCAGCUGAGCCCGGAGAAGAGCGAAAUAUGGGGACCCGGGCUAAAAGCAGACGUCGUCCUUCCCGCCCGCUAUUUCUAUAUUCAGGCAGUGGAUACAUCAGGGAAUAAAUUCACAUCUUCUCCAGGCGAAAAGGUCUUCCAGGUGAAAGUCUCAGCACCAGAGGAGCAAUUCACUAGAGUUGGAGUCCAGGUUUUAGЖCCGAAAAGAUGGGUCCUUCAUAGUAAGAUACЖGAAUGUAUGCAAGCUACAAAAAUCUGAAGGUGGAAAUUAAAUUCCAAGGGCAACAUGUGGCCAAAUCCCCAUAUAUUUUAAAAGGGCCGGUUUACCAUGAGAACUGUGACUGUCCUCUGCAAGAUAGUGCAGCCUGGCUACGGGAGAUGAACUGCCCUGAAACCAUUGCUCAGAUUCAGAGAGAUCUGGCACAUUUCCCUGCUGUGGAUCCAGAAAAGAUUGCAGUAGAAAUCCCAAAAAGAUPUGGACAGAGGCAGAGCCUAUGUCACUACACCUUAAAGGAUAACAAGGUUUAUAUCAAGACUCAUGGUGAACAUGUAGGUUUUAGAAUUUUCAUGGAUGCCAUACUACUUUCUUUGACUAGAAAGGUGAAGAUGCCAGAUGUGGAGCUCUUUGUUAAUUUGGGAGACUGGCCUUUGGAAAAAAAGAAAUCCAAUUCAAACAPCCAUCCGAUCUUUUCCUGGUGUGGCUCCACAGAUUCCAAGGAUAUCGUGAUGCCUACGUACGAUPUGACUGAUUCUGUUCUGGAAACCAUGGGCCGGUGAGAGAUAAGUCAGGGUUGGCCCAGAGCCUUGGUUUUCUUUCUUUGGUGAGUUCUUUUGCAACAACCUUUGUGAUAUGAUGAUUUGGGAGGAAAAUCUGUUGCACUUUGUCUUCUAGGGUAAGUCUGGAUAUGAUGUCCGUGCAAGCUAЖCACGGGUCCUCCCUGGGAAAGCAAAAAUUCCACUGCCGUCUGGAGAGGGCGAGACAGCCGCAAAGAGAGACUCGAGCUGGUUAAACUCAGUAGAAAACACCCAGAACUCAUAGACGCUGCUUUCACCAACUUUUUCUUCUUUAAACACGAUGAAAACCUGUAUGGUCCCAUUGUGAAACAUAUUUCAUUUUUUGAUUUCUUCAAGCAUAAGUAUCAAAUAAAUAUCGAUGGCACUGUAGCAGCUUAUCGCCUGCCAUAUUUGCUAGUUGGUGACAGUGUUGUGCUGAAGCAGGAUUCCAUCUACUAUGAACAUUUUUACAAUGAGCUGCAGCCCUGGAAACACUACAUUCCAGUUAAGAGCAACCUGAGCGAUCUGCUAGAAAAACUUAAAUGGGCGAAAGAUCACGAUGAAGAGGCCAAAAAGAUAGCAAAAGCAGGACAAGAAUUUGCAAGAAAUAAUCUCAUGGGCGAUGACAUAUUCUGUUAUUAUUUCAAACUUUUCCAGGAAUAUGCCAAUUUACAAGUGAGUGAGCCCCAAAUCCGAGAGGGCAUGAAAAGGGUAGAACCACAGACUGAGGACGACCUCUUCCCUUGUACUUGCCAUAGGAAAAAGACCAAAGAUGAACUCUGAUAUGCAAAAUAЖCUUCUAUUAGAAUAAUGGUGCUCUGAAGACUCUUCUUAACUAAAAAGAAGAAUUUUUUUAAGUAUUAAUUCCAUGGЖCAAUAUAAAAUCUGUGUGAUUGUUUGCAGUAUGAAGACACAUUUCUACUUAUGCAGUAUUCUCAUGACUGUACUPUAAAGUACAUUUUUAGAAUUUUAUAAUAAAACCACCUUUAUUUUAAA
Sequence (SHORT NAMES ENCODING) GCGGUUCUCGGCCGGGACAGCAGAACGCCAGGGGACCCUCACCUGGGCGCGCCGGGGCACGGGCUUUGAUUGUCCUGGGGUCGCGGAGACCCGCGCGCCUGCCCUGCACGCCGGGCGGCAACCUUUGCAGUCGCGUUGGCUGCUGCGAUCGGCCGGCGGGUCCCUGCCGAAGGCUCGGCUGCUUCUGUCCACCUCUUACACUUCUUCAUUUAUCGGUGGAUCAUUUCGAGAGUCCGUCUUGUAAAUGUUUGGCACUUUGCUACUYUAUUGCUUCUUUCUGGCGACAGUUCCAGCACUCGCCGAGACCGGCGGAGAAAGGCAGCUGAGCCCGGAGAAGAGCGAAAUAUGGGGACCCGGGCUAAAAGCAGACGUCGUCCUUCCCGCCCGCUAUUUCUAUAUUCAGGCAGUGGAUACAUCAGGGAAUAAAUUCACAUCUUCUCCAGGCGAAAAGGUCUUCCAGGUGAAAGUCUCAGCACCAGAGGAGCAAUUCACUAGAGUUGGAGUCCAGGUUUUAGm6ACCGAAAAGAUGGGUCCUUCAUAGUAAGAUACm6AGAAUGUAUGCAAGCUACAAAAAUCUGAAGGUGGAAAUUAAAUUCCAAGGGCAACAUGUGGCCAAAUCCCCAUAUAUUUUAAAAGGGCCGGUUUACCAUGAGAACUGUGACUGUCCUCUGCAAGAUAGUGCAGCCUGGCUACGGGAGAUGAACUGCCCUGAAACCAUUGCUCAGAUUCAGAGAGAUCUGGCACAUUUCCCUGCUGUGGAUCCAGAAAAGAUUGCAGUAGAAAUCCCAAAAAGAUYUGGACAGAGGCAGAGCCUAUGUCACUACACCUUAAAGGAUAACAAGGUUUAUAUCAAGACUCAUGGUGAACAUGUAGGUUUUAGAAUUUUCAUGGAUGCCAUACUACUUUCUUUGACUAGAAAGGUGAAGAUGCCAGAUGUGGAGCUCUUUGUUAAUUUGGGAGACUGGCCUUUGGAAAAAAAGAAAUCCAAUUCAAACAYCCAUCCGAUCUUUUCCUGGUGUGGCUCCACAGAUUCCAAGGAUAUCGUGAUGCCUACGUACGAUYUGACUGAUUCUGUUCUGGAAACCAUGGGCCGGUGAGAGAUAAGUCAGGGUUGGCCCAGAGCCUUGGUUUUCUUUCUUUGGUGAGUUCUUUUGCAACAACCUUUGUGAUAUGAUGAUUUGGGAGGAAAAUCUGUUGCACUUUGUCUUCUAGGGUAAGUCUGGAUAUGAUGUCCGUGCAAGCUAm6ACACGGGUCCUCCCUGGGAAAGCAAAAAUUCCACUGCCGUCUGGAGAGGGCGAGACAGCCGCAAAGAGAGACUCGAGCUGGUUAAACUCAGUAGAAAACACCCAGAACUCAUAGACGCUGCUUUCACCAACUUUUUCUUCUUUAAACACGAUGAAAACCUGUAUGGUCCCAUUGUGAAACAUAUUUCAUUUUUUGAUUUCUUCAAGCAUAAGUAUCAAAUAAAUAUCGAUGGCACUGUAGCAGCUUAUCGCCUGCCAUAUUUGCUAGUUGGUGACAGUGUUGUGCUGAAGCAGGAUUCCAUCUACUAUGAACAUUUUUACAAUGAGCUGCAGCCCUGGAAACACUACAUUCCAGUUAAGAGCAACCUGAGCGAUCUGCUAGAAAAACUUAAAUGGGCGAAAGAUCACGAUGAAGAGGCCAAAAAGAUAGCAAAAGCAGGACAAGAAUUUGCAAGAAAUAAUCUCAUGGGCGAUGACAUAUUCUGUUAUUAUUUCAAACUUUUCCAGGAAUAUGCCAAUUUACAAGUGAGUGAGCCCCAAAUCCGAGAGGGCAUGAAAAGGGUAGAACCACAGACUGAGGACGACCUCUUCCCUUGUACUUGCCAUAGGAAAAAGACCAAAGAUGAACUCUGAUAUGCAAAAUAm6ACUUCUAUUAGAAUAAUGGUGCUCUGAAGACUCUUCUUAACUAAAAAGAAGAAUUUUUUUAAGUAUUAAUUCCAUGGm6ACAAUAUAAAAUCUGUGUGAUUGUUUGCAGUAUGAAGACACAUUUCUACUUAUGCAGUAUUCUCAUGACUGUACUYUAAAGUACAUUUUUAGAAUUUUAUAAUAAAACCACCUUUAUUUUAAA
Sequence (MODOMICS CODE ENCODING) GCGGUUCUCGGCCGGGACAGCAGAACGCCAGGGGACCCUCACCUGGGCGCGCCGGGGCACGGGCUUUGAUUGUCCUGGGGUCGCGGAGACCCGCGCGCCUGCCCUGCACGCCGGGCGGCAACCUUUGCAGUCGCGUUGGCUGCUGCGAUCGGCCGGCGGGUCCCUGCCGAAGGCUCGGCUGCUUCUGUCCACCUCUUACACUUCUUCAUUUAUCGGUGGAUCAUUUCGAGAGUCCGUCUUGUAAAUGUUUGGCACUUUGCUACU2000000009UUAUUGCUUCUUUCUGGCGACAGUUCCAGCACUCGCCGAGACCGGCGGAGAAAGGCAGCUGAGCCCGGAGAAGAGCGAAAUAUGGGGACCCGGGCUAAAAGCAGACGUCGUCCUUCCCGCCCGCUAUUUCUAUAUUCAGGCAGUGGAUACAUCAGGGAAUAAAUUCACAUCUUCUCCAGGCGAAAAGGUCUUCCAGGUGAAAGUCUCAGCACCAGAGGAGCAAUUCACUAGAGUUGGAGUCCAGGUUUUAG2000000006ACCGAAAAGAUGGGUCCUUCAUAGUAAGAUAC2000000006AGAAUGUAUGCAAGCUACAAAAAUCUGAAGGUGGAAAUUAAAUUCCAAGGGCAACAUGUGGCCAAAUCCCCAUAUAUUUUAAAAGGGCCGGUUUACCAUGAGAACUGUGACUGUCCUCUGCAAGAUAGUGCAGCCUGGCUACGGGAGAUGAACUGCCCUGAAACCAUUGCUCAGAUUCAGAGAGAUCUGGCACAUUUCCCUGCUGUGGAUCCAGAAAAGAUUGCAGUAGAAAUCCCAAAAAGAU2000000009UUGGACAGAGGCAGAGCCUAUGUCACUACACCUUAAAGGAUAACAAGGUUUAUAUCAAGACUCAUGGUGAACAUGUAGGUUUUAGAAUUUUCAUGGAUGCCAUACUACUUUCUUUGACUAGAAAGGUGAAGAUGCCAGAUGUGGAGCUCUUUGUUAAUUUGGGAGACUGGCCUUUGGAAAAAAAGAAAUCCAAUUCAAACA2000000009UCCAUCCGAUCUUUUCCUGGUGUGGCUCCACAGAUUCCAAGGAUAUCGUGAUGCCUACGUACGAU2000000009UUGACUGAUUCUGUUCUGGAAACCAUGGGCCGGUGAGAGAUAAGUCAGGGUUGGCCCAGAGCCUUGGUUUUCUUUCUUUGGUGAGUUCUUUUGCAACAACCUUUGUGAUAUGAUGAUUUGGGAGGAAAAUCUGUUGCACUUUGUCUUCUAGGGUAAGUCUGGAUAUGAUGUCCGUGCAAGCUA2000000006ACACGGGUCCUCCCUGGGAAAGCAAAAAUUCCACUGCCGUCUGGAGAGGGCGAGACAGCCGCAAAGAGAGACUCGAGCUGGUUAAACUCAGUAGAAAACACCCAGAACUCAUAGACGCUGCUUUCACCAACUUUUUCUUCUUUAAACACGAUGAAAACCUGUAUGGUCCCAUUGUGAAACAUAUUUCAUUUUUUGAUUUCUUCAAGCAUAAGUAUCAAAUAAAUAUCGAUGGCACUGUAGCAGCUUAUCGCCUGCCAUAUUUGCUAGUUGGUGACAGUGUUGUGCUGAAGCAGGAUUCCAUCUACUAUGAACAUUUUUACAAUGAGCUGCAGCCCUGGAAACACUACAUUCCAGUUAAGAGCAACCUGAGCGAUCUGCUAGAAAAACUUAAAUGGGCGAAAGAUCACGAUGAAGAGGCCAAAAAGAUAGCAAAAGCAGGACAAGAAUUUGCAAGAAAUAAUCUCAUGGGCGAUGACAUAUUCUGUUAUUAUUUCAAACUUUUCCAGGAAUAUGCCAAUUUACAAGUGAGUGAGCCCCAAAUCCGAGAGGGCAUGAAAAGGGUAGAACCACAGACUGAGGACGACCUCUUCCCUUGUACUUGCCAUAGGAAAAAGACCAAAGAUGAACUCUGAUAUGCAAAAUA2000000006ACUUCUAUUAGAAUAAUGGUGCUCUGAAGACUCUUCUUAACUAAAAAGAAGAAUUUUUUUAAGUAUUAAUUCCAUGG2000000006ACAAUAUAAAAUCUGUGUGAUUGUUUGCAGUAUGAAGACACAUUUCUACUUAUGCAGUAUUCUCAUGACUGUACU2000000009UUAAAGUACAUUUUUAGAAUUUUAUAAUAAAACCACCUUUAUUUUAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 265 516 548 792 993 1058 1241 1884 1961 2036
Modification Positions Y m6A m6A Y Y Y m6A m6A m6A Y
Genomic Coordinates 13:102798650:- 13:102796920:- 13:102796888:- 13:102793647:- 13:102791354:- 13:102791289:- 13:102791106:- 13:102784483:- 13:102784406:- 13:102784331:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8