Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000649452
Gene ID: ENSG00000136156
Gene Name: ITM2B
Sequence (UNICHARACTER ENCODING) GCCGCCGCGGAGCUUCCCGAACCUCUUCAGCCGCCCGGAGCCGCUCCCGGAGCCCGGCCGUAGAGGCUGCAAUCGCAGCCGGGAGCCCGCAGCCCGCGCCCCGAGCCCGCCGCCGCCCUUCGAGGGCGCCCCAGGCCGCGCCAUGGUGAAGGUGACGUUCAACUCCGCUCUGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCGGCGAGGAGGCGCUCAUCAUCCCCCCCGACGCCGUCGCGGUGGACUGCAAGGACCCAGAUGAUGUGGUACCAGUUGGCCAAAGAAGAGCCUGGUGUUGGUGCAUGUGCUUUGGACUAGCAUUUAUGCUUGCAGGUGUUAUUCUAGGAGGAGCAUACUUGUACЖAAUAUUUUGCACUUCAAAGUUUCUCUCUUGUUGCCCAGACUGGAGUCCAAUGGCGCGAUCUCGGCUCACUGCACCCUCUGUCUCCCGGGUUCAGGCUGGAGUGCGGUGGUGCAAUCACAGCUCACUGUAGCCUCAACCUCUUGGGCUCAGGCAAUCCUCCCGCCUCAACCUCCCCAGGAGUAGCUAGGACUACAGCCAGAUGACGUGUACUACUGUGGAAUAAAGUACAUCAAAGAUGAUGUCAUCUUAAAUGAGCCCUCUGCAGAUGCCCCAGCUGCUCUCUACCAGЖCAAUUGAAGAAAAUAUUAAAAUCUUUGAAGAAGAAGAAGUUGAAUUUAUCAGUGUGCCUGUCCCAGAGUUUGCAGAUAGUGAUCCUGCCAACAUUGUUCAUGACUPUAЖCAAGAAACUUACAGCCUAUUUAGAUCUUAACCUGGAUAAGUGCUAUGUGAUCCCUCUGAACACUUCCAUUGUUAUGCCACCCAGAAACCUACUGGAGUUACUUAUUAЖCAUCAAGGCUGGAACCUAUUUGCCUCAGUCCUAUCUGAUUCAUGAGCACAUGGUUAUUACUGAUCGCAUUGAAAACAUUGAUCACCUGGGUUUCUPUAUUUAUCGACUGUGUCAUGACAAGGAAACUUACAAACUGCAACGCAGAGAAACUAUUAAAGGUAUUCAGAAACGUGAAGCCAGCAAUUGUUUCGCAAUUCGGCAUUUUGAAAACAAAUUUGCCGUGGAAACUPUAAUUUGUUCUUGAЖCAGUCAAGAAAAACAUUAUUGAGGAAAAUUAAUAUCACAGCAUAACCCCACCCUPUACЖUUUUGUGCAGUGAUUAUUUUUUAAAGUCUUCUUUCAUGUAAGUAGCAAЖCAGGGCUPUACUAUCUUUUCAUCUCAUUAAUUCAAUUAAAACCAUUACCUUAAAAUUUUUUUCUUUCGAAGUGUGGUGUCUUUUAUAUUUGAAUUAGUAACUGUAUGAAGUCAUAGAUAAUAGUACAUGUCACCUUAGGUAGUAGGAAGAAUUACAAUUUCUPUAAAUCAUUUAUCUGGAUUUUUAUGUUUUAUUAGCAUUUUCAAGAAGACGGAUUAUCUAGAGAAUAAUCAUAUAUAUGCAUACGUAAAAAUGGACCACAGUGACUUAUUUGUAGUUGUUAGUUGCCCUGCUACCUAGUUUGUUAGUGCAUUUGAGCACACAUUUUAAUUUUCCUCUAAUUAAAAUGUGCAGUAUUUUCAGUGUCAAAUAUAUUUAACUAUUUAGAGAAUGAUUUCCACCUPUAUGUUUUAAUAUCCUAGGCAUCUGCUGUAAUAAUAUUUUAGAAAAUGUUUGGAAUUUAAGAAAUAЖCUUGUGUUACUAAUUUGUAUAACCCAUAUCUGUGCAAUGGAAUAUAAAUAUCACAAAGUUGUUUAACUAGACUGCGUGUUGUUUUUCCCGUAUAAUAAAACCAAAGAAUAGUUUGGUUCUUCAAAUCUUAAGAGAAUCCACAUAAAAGAAGAAACUAUUUUUUAAAAAUUCACUUCUAUAUAUACAAUGAGUAAAAUCACAGAUUUUUUCUPUAAAUAAAAAUAAGUCAUUUUAAUAACUAAACCAGAUUCUUUGUGGAU
Sequence (SHORT NAMES ENCODING) GCCGCCGCGGAGCUUCCCGAACCUCUUCAGCCGCCCGGAGCCGCUCCCGGAGCCCGGCCGUAGAGGCUGCAAUCGCAGCCGGGAGCCCGCAGCCCGCGCCCCGAGCCCGCCGCCGCCCUUCGAGGGCGCCCCAGGCCGCGCCAUGGUGAAGGUGACGUUCAACUCCGCUCUGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCGGCGAGGAGGCGCUCAUCAUCCCCCCCGACGCCGUCGCGGUGGACUGCAAGGACCCAGAUGAUGUGGUACCAGUUGGCCAAAGAAGAGCCUGGUGUUGGUGCAUGUGCUUUGGACUAGCAUUUAUGCUUGCAGGUGUUAUUCUAGGAGGAGCAUACUUGUACm6AAAUAUUUUGCACUUCAAAGUUUCUCUCUUGUUGCCCAGACUGGAGUCCAAUGGCGCGAUCUCGGCUCACUGCACCCUCUGUCUCCCGGGUUCAGGCUGGAGUGCGGUGGUGCAAUCACAGCUCACUGUAGCCUCAACCUCUUGGGCUCAGGCAAUCCUCCCGCCUCAACCUCCCCAGGAGUAGCUAGGACUACAGCCAGAUGACGUGUACUACUGUGGAAUAAAGUACAUCAAAGAUGAUGUCAUCUUAAAUGAGCCCUCUGCAGAUGCCCCAGCUGCUCUCUACCAGm6ACAAUUGAAGAAAAUAUUAAAAUCUUUGAAGAAGAAGAAGUUGAAUUUAUCAGUGUGCCUGUCCCAGAGUUUGCAGAUAGUGAUCCUGCCAACAUUGUUCAUGACUYUAm6ACAAGAAACUUACAGCCUAUUUAGAUCUUAACCUGGAUAAGUGCUAUGUGAUCCCUCUGAACACUUCCAUUGUUAUGCCACCCAGAAACCUACUGGAGUUACUUAUUAm6ACAUCAAGGCUGGAACCUAUUUGCCUCAGUCCUAUCUGAUUCAUGAGCACAUGGUUAUUACUGAUCGCAUUGAAAACAUUGAUCACCUGGGUUUCUYUAUUUAUCGACUGUGUCAUGACAAGGAAACUUACAAACUGCAACGCAGAGAAACUAUUAAAGGUAUUCAGAAACGUGAAGCCAGCAAUUGUUUCGCAAUUCGGCAUUUUGAAAACAAAUUUGCCGUGGAAACUYUAAUUUGUUCUUGAm6ACAGUCAAGAAAAACAUUAUUGAGGAAAAUUAAUAUCACAGCAUAACCCCACCCUYUACm6AUUUUGUGCAGUGAUUAUUUUUUAAAGUCUUCUUUCAUGUAAGUAGCAAm6ACAGGGCUYUACUAUCUUUUCAUCUCAUUAAUUCAAUUAAAACCAUUACCUUAAAAUUUUUUUCUUUCGAAGUGUGGUGUCUUUUAUAUUUGAAUUAGUAACUGUAUGAAGUCAUAGAUAAUAGUACAUGUCACCUUAGGUAGUAGGAAGAAUUACAAUUUCUYUAAAUCAUUUAUCUGGAUUUUUAUGUUUUAUUAGCAUUUUCAAGAAGACGGAUUAUCUAGAGAAUAAUCAUAUAUAUGCAUACGUAAAAAUGGACCACAGUGACUUAUUUGUAGUUGUUAGUUGCCCUGCUACCUAGUUUGUUAGUGCAUUUGAGCACACAUUUUAAUUUUCCUCUAAUUAAAAUGUGCAGUAUUUUCAGUGUCAAAUAUAUUUAACUAUUUAGAGAAUGAUUUCCACCUYUAUGUUUUAAUAUCCUAGGCAUCUGCUGUAAUAAUAUUUUAGAAAAUGUUUGGAAUUUAAGAAAUAm6ACUUGUGUUACUAAUUUGUAUAACCCAUAUCUGUGCAAUGGAAUAUAAAUAUCACAAAGUUGUUUAACUAGACUGCGUGUUGUUUUUCCCGUAUAAUAAAACCAAAGAAUAGUUUGGUUCUUCAAAUCUUAAGAGAAUCCACAUAAAAGAAGAAACUAUUUUUUAAAAAUUCACUUCUAUAUAUACAAUGAGUAAAAUCACAGAUUUUUUCUYUAAAUAAAAAUAAGUCAUUUUAAUAACUAAACCAGAUUCUUUGUGGAU
Sequence (MODOMICS CODE ENCODING) GCCGCCGCGGAGCUUCCCGAACCUCUUCAGCCGCCCGGAGCCGCUCCCGGAGCCCGGCCGUAGAGGCUGCAAUCGCAGCCGGGAGCCCGCAGCCCGCGCCCCGAGCCCGCCGCCGCCCUUCGAGGGCGCCCCAGGCCGCGCCAUGGUGAAGGUGACGUUCAACUCCGCUCUGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCGGCGAGGAGGCGCUCAUCAUCCCCCCCGACGCCGUCGCGGUGGACUGCAAGGACCCAGAUGAUGUGGUACCAGUUGGCCAAAGAAGAGCCUGGUGUUGGUGCAUGUGCUUUGGACUAGCAUUUAUGCUUGCAGGUGUUAUUCUAGGAGGAGCAUACUUGUAC2000000006AAAUAUUUUGCACUUCAAAGUUUCUCUCUUGUUGCCCAGACUGGAGUCCAAUGGCGCGAUCUCGGCUCACUGCACCCUCUGUCUCCCGGGUUCAGGCUGGAGUGCGGUGGUGCAAUCACAGCUCACUGUAGCCUCAACCUCUUGGGCUCAGGCAAUCCUCCCGCCUCAACCUCCCCAGGAGUAGCUAGGACUACAGCCAGAUGACGUGUACUACUGUGGAAUAAAGUACAUCAAAGAUGAUGUCAUCUUAAAUGAGCCCUCUGCAGAUGCCCCAGCUGCUCUCUACCAG2000000006ACAAUUGAAGAAAAUAUUAAAAUCUUUGAAGAAGAAGAAGUUGAAUUUAUCAGUGUGCCUGUCCCAGAGUUUGCAGAUAGUGAUCCUGCCAACAUUGUUCAUGACU2000000009UUA2000000006ACAAGAAACUUACAGCCUAUUUAGAUCUUAACCUGGAUAAGUGCUAUGUGAUCCCUCUGAACACUUCCAUUGUUAUGCCACCCAGAAACCUACUGGAGUUACUUAUUA2000000006ACAUCAAGGCUGGAACCUAUUUGCCUCAGUCCUAUCUGAUUCAUGAGCACAUGGUUAUUACUGAUCGCAUUGAAAACAUUGAUCACCUGGGUUUCU2000000009UUAUUUAUCGACUGUGUCAUGACAAGGAAACUUACAAACUGCAACGCAGAGAAACUAUUAAAGGUAUUCAGAAACGUGAAGCCAGCAAUUGUUUCGCAAUUCGGCAUUUUGAAAACAAAUUUGCCGUGGAAACU2000000009UUAAUUUGUUCUUGA2000000006ACAGUCAAGAAAAACAUUAUUGAGGAAAAUUAAUAUCACAGCAUAACCCCACCCU2000000009UUAC2000000006AUUUUGUGCAGUGAUUAUUUUUUAAAGUCUUCUUUCAUGUAAGUAGCAA2000000006ACAGGGCU2000000009UUACUAUCUUUUCAUCUCAUUAAUUCAAUUAAAACCAUUACCUUAAAAUUUUUUUCUUUCGAAGUGUGGUGUCUUUUAUAUUUGAAUUAGUAACUGUAUGAAGUCAUAGAUAAUAGUACAUGUCACCUUAGGUAGUAGGAAGAAUUACAAUUUCU2000000009UUAAAUCAUUUAUCUGGAUUUUUAUGUUUUAUUAGCAUUUUCAAGAAGACGGAUUAUCUAGAGAAUAAUCAUAUAUAUGCAUACGUAAAAAUGGACCACAGUGACUUAUUUGUAGUUGUUAGUUGCCCUGCUACCUAGUUUGUUAGUGCAUUUGAGCACACAUUUUAAUUUUCCUCUAAUUAAAAUGUGCAGUAUUUUCAGUGUCAAAUAUAUUUAACUAUUUAGAGAAUGAUUUCCACCU2000000009UUAUGUUUUAAUAUCCUAGGCAUCUGCUGUAAUAAUAUUUUAGAAAAUGUUUGGAAUUUAAGAAAUA2000000006ACUUGUGUUACUAAUUUGUAUAACCCAUAUCUGUGCAAUGGAAUAUAAAUAUCACAAAGUUGUUUAACUAGACUGCGUGUUGUUUUUCCCGUAUAAUAAAACCAAAGAAUAGUUUGGUUCUUCAAAUCUUAAGAGAAUCCACAUAAAAGAAGAAACUAUUUUUUAAAAAUUCACUUCUAUAUAUACAAUGAGUAAAAUCACAGAUUUUUUCU2000000009UUAAAUAAAAAUAAGUCAUUUUAAUAACUAAACCAGAUUCUUUGUGGAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 371 660 766 769 877 973 1107 1122 1177 1181 1230 1238 1393 1634 1701 1913
Modification Positions m6A m6A Y m6A m6A Y Y m6A Y m6A m6A Y Y Y m6A Y
Genomic Coordinates 13:48253919:+ 13:48256270:+ 13:48256376:+ 13:48256379:+ 13:48258229:+ 13:48258885:+ 13:48261210:+ 13:48261225:+ 13:48261280:+ 13:48261284:+ 13:48261333:+ 13:48261341:+ 13:48261496:+ 13:48261737:+ 13:48261804:+ 13:48262016:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3kRDPWwiRCgi
L6w2k2VEv4EY
8cMbzB4aD5Se
93arJtwJmuS9
ArijeGVTwYBw
BkoLW2CBToyL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
5aTkEfEpX8Xm
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
kx7BHU7ZycYE
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8