Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000620617
Gene ID: ENSG00000275964
Gene Name: None
Sequence (UNICHARACTER ENCODING) GCЖGUUCCACUCCCGCCUGCCAGCCCUCAACUCCCGGUCGGGUUGUCUCCCCGCCGGUCUCCCGCCCCCAGCUACCGGGUCCGCCAGGGUCAGGAGCCCGAGAUUCGCCGCCCGUCGUAGCGGCCCGCUUCGGCCCCUCGGGGCCCGGGGCUCUCCGGGACCUACACAGCCCGGGAGACUCCGGCGGGGCUGCCUGCCCUCGCCCGAGCCCGGGGGCCCAAGCUGCGGCAGCGGCUCCCAACGCCUCUGCUCGAGGAGAGCGGCGGCCUGGAUGCCCCAGCGCCCUCCCUGUCCAGUUCCUUGAAGGCCCCCAAGAGGGGCGAGGCCGGGGAGGUGCUGGAGCGGGGCCAAGUGAGCUUUCGGGGCCGCGGUUGAЖCUGGAGUCUUGAGUGCGCUGCGGUCAGUGGAGGCCCUUCCACCCUCGCCGCGCCCCGUGGGGAAUAGUCCCCCACCUCCCGCCAUGGCUGCAGCAGGAGGAGACGACGUCCUCCAUUUUGUCGGGACAACUGUGGGAACUUGGGACCCCUCAAAACCAAACCCCGUGGGGCCAGGЖCUUGUCCCGGAAGCCCCGACUGGGCUCUGCCAUUCGGЖCAAGGGAACAGCCCCAGCUGCCGGCGUCUGCGUCCGCGGGGCAGUACUGGUCGGGCGCGACGGUGGAGACACCCAGACGCAGCUCCCCGCCUCCAUCAACCAAGAUGGAGGGAGCUGCAGGCUCCCUUGGAGCUGGGCUCUCGCGGGUUGGAGGGGCUGAGGCCUGCCCUGGGGCGUCCCUGGGCGCCGCCGUCCUGUGCUAGCAGCCCGGGGCGCUGGCCCUGCCUAGGCCUUUUUACUGCCUGCCACCGUCUCCUGGUCCGGAAUGGUUGAUGGAGACUCCAUGGAGGCUCCCUCCACAGCCCGCUCUAUCGCGGGGCGCACCCGCUGCGGCCCCUGCGGGGAGCAGAAUCAGGGЖCAGAUGGCGCCCGGUGAGGGCGGGCCCCACAGGCCACCUCCACGAGGGGUCUUCUCUUUUGUUCCUCGUCUACACCUACGUCUUCGGCGGAUGUCAUGGUGCUGAACCAUUUCCCGGЖCUCCACGUAAAGAUGGAAGCGAUUCCGCUUUCGUCUCGCCCUGGCGGUUCUUAGUGGGAUUACAAUUGAGGAUGUUAGUUUGGAUGAAAGUUGGUGAAAUACUUACCUUAUGUCUGGAAAUACAGAUAAUGUGAUUUUUAAAAAACACAUUGAGCCCCGUUUUACUUCUGUGGUAUGGUAAAGGCACAGGUUUAUUCAAUGAAAAUCAGACGUUAACCAUCUAAUGCAGGGGUGGCCAAUCUUUUGGCUUCCCGGGGCCACAUUGGAAGAAUUGGCUUGGGCCACACAUAAAAUACGCUAACAGUAACAAUAGCUGAUGAGCUAAAACAAACGAAAAAACCAAAACGCCAAAAAAAUCUCAUAACGUUUUAAGAAAAUUUACAAAUAUGUGUUGGGCUGCAUUCAAAGCCGUCCUGGGCCGCAUGCAACCCCCAAGGGCUGCAGGUUGGACAAGCUUGAUCUAAGACAAAAGCAUGUUCACGGAUUGAUGAGAGUUCUGUGUAAGCCUUUGCAUAUUGCAUAGUGCUGUAUGUCAUGGAUAUGCCUAAUAUCACCUACAUUUUUUAGGUCCUCAGUUACUCUUUGGAAAUAAGUGAAUUACAUGUAAUGUCAUCAUUUUAAUGACUGCUGUAAAUUACAAGCACUGACUACCCUGAGUUCGUGGAGAAGGGCUCCAUAGAGAAAAUUUGAAGGUCUGACAGAAACUUUAAAUGGUAAGCUCAGUAGCCACUUGUCAUCUAUUUUCUGAUUAUCUUUUUCACAAUUUUUUGGCAUUGAUACUGUUCAAAGAUUAAAAUUGGGUAACAUUUCUUUUUCCUGAUAGUGGCAGGAAUGACAGGUUCAUGUCCCAAUGAAAACGCUCACCUCAGUAUGCUGCCAUGAUUUCGAGGGUUGUCGAAAAUUUAGGAAAAAAAAGUCUUCAUUGUUCAACAAGAUAGUGUCAUUUAUUGUAAAUCUUUUGAUAAUUCAGGACUCCCGGCUAAUACAAAGUCACAGCAUUAUGACCAAGUCUACACAAAGGGGCCAGAUAGCCUGCCUUUGAAUCGUACUUUAUUACUAGUAGCUGUGUGAUCAUCUUAACAGAUAAGUUACUUAAACUCAGCCUCACUUUUAUCAUUUAAAAAAUGUAACAAAUACUUAAGAUUUUUUUUUUUUGAGAAUUAAAUGAAUUGGCCGGGCACAAUGGCCCACGCCUGUAAUCCCAGCUAUUUGGGAGGCUGAGGCAGGAGAAUCACUUGAACCCAGGAGGUGGAGGUUGCAGUGAGCCGAGACUGCAUCACUGCACUCCAGUCUGGGCAACACAGCAAGACUGUAUCUCAAAAAAAGAAAAACAAAAAACAAGCAAAAAAAGAAUUAAAUAAAUUAUCACACAUAUGACACUUAGAAUUGCACCUGGCACAUUAAUUAAUAAAAGCUUGUAAAUUUU
Sequence (SHORT NAMES ENCODING) GCm6AGUUCCACUCCCGCCUGCCAGCCCUCAACUCCCGGUCGGGUUGUCUCCCCGCCGGUCUCCCGCCCCCAGCUACCGGGUCCGCCAGGGUCAGGAGCCCGAGAUUCGCCGCCCGUCGUAGCGGCCCGCUUCGGCCCCUCGGGGCCCGGGGCUCUCCGGGACCUACACAGCCCGGGAGACUCCGGCGGGGCUGCCUGCCCUCGCCCGAGCCCGGGGGCCCAAGCUGCGGCAGCGGCUCCCAACGCCUCUGCUCGAGGAGAGCGGCGGCCUGGAUGCCCCAGCGCCCUCCCUGUCCAGUUCCUUGAAGGCCCCCAAGAGGGGCGAGGCCGGGGAGGUGCUGGAGCGGGGCCAAGUGAGCUUUCGGGGCCGCGGUUGAm6ACUGGAGUCUUGAGUGCGCUGCGGUCAGUGGAGGCCCUUCCACCCUCGCCGCGCCCCGUGGGGAAUAGUCCCCCACCUCCCGCCAUGGCUGCAGCAGGAGGAGACGACGUCCUCCAUUUUGUCGGGACAACUGUGGGAACUUGGGACCCCUCAAAACCAAACCCCGUGGGGCCAGGm6ACUUGUCCCGGAAGCCCCGACUGGGCUCUGCCAUUCGGm6ACAAGGGAACAGCCCCAGCUGCCGGCGUCUGCGUCCGCGGGGCAGUACUGGUCGGGCGCGACGGUGGAGACACCCAGACGCAGCUCCCCGCCUCCAUCAACCAAGAUGGAGGGAGCUGCAGGCUCCCUUGGAGCUGGGCUCUCGCGGGUUGGAGGGGCUGAGGCCUGCCCUGGGGCGUCCCUGGGCGCCGCCGUCCUGUGCUAGCAGCCCGGGGCGCUGGCCCUGCCUAGGCCUUUUUACUGCCUGCCACCGUCUCCUGGUCCGGAAUGGUUGAUGGAGACUCCAUGGAGGCUCCCUCCACAGCCCGCUCUAUCGCGGGGCGCACCCGCUGCGGCCCCUGCGGGGAGCAGAAUCAGGGm6ACAGAUGGCGCCCGGUGAGGGCGGGCCCCACAGGCCACCUCCACGAGGGGUCUUCUCUUUUGUUCCUCGUCUACACCUACGUCUUCGGCGGAUGUCAUGGUGCUGAACCAUUUCCCGGm6ACUCCACGUAAAGAUGGAAGCGAUUCCGCUUUCGUCUCGCCCUGGCGGUUCUUAGUGGGAUUACAAUUGAGGAUGUUAGUUUGGAUGAAAGUUGGUGAAAUACUUACCUUAUGUCUGGAAAUACAGAUAAUGUGAUUUUUAAAAAACACAUUGAGCCCCGUUUUACUUCUGUGGUAUGGUAAAGGCACAGGUUUAUUCAAUGAAAAUCAGACGUUAACCAUCUAAUGCAGGGGUGGCCAAUCUUUUGGCUUCCCGGGGCCACAUUGGAAGAAUUGGCUUGGGCCACACAUAAAAUACGCUAACAGUAACAAUAGCUGAUGAGCUAAAACAAACGAAAAAACCAAAACGCCAAAAAAAUCUCAUAACGUUUUAAGAAAAUUUACAAAUAUGUGUUGGGCUGCAUUCAAAGCCGUCCUGGGCCGCAUGCAACCCCCAAGGGCUGCAGGUUGGACAAGCUUGAUCUAAGACAAAAGCAUGUUCACGGAUUGAUGAGAGUUCUGUGUAAGCCUUUGCAUAUUGCAUAGUGCUGUAUGUCAUGGAUAUGCCUAAUAUCACCUACAUUUUUUAGGUCCUCAGUUACUCUUUGGAAAUAAGUGAAUUACAUGUAAUGUCAUCAUUUUAAUGACUGCUGUAAAUUACAAGCACUGACUACCCUGAGUUCGUGGAGAAGGGCUCCAUAGAGAAAAUUUGAAGGUCUGACAGAAACUUUAAAUGGUAAGCUCAGUAGCCACUUGUCAUCUAUUUUCUGAUUAUCUUUUUCACAAUUUUUUGGCAUUGAUACUGUUCAAAGAUUAAAAUUGGGUAACAUUUCUUUUUCCUGAUAGUGGCAGGAAUGACAGGUUCAUGUCCCAAUGAAAACGCUCACCUCAGUAUGCUGCCAUGAUUUCGAGGGUUGUCGAAAAUUUAGGAAAAAAAAGUCUUCAUUGUUCAACAAGAUAGUGUCAUUUAUUGUAAAUCUUUUGAUAAUUCAGGACUCCCGGCUAAUACAAAGUCACAGCAUUAUGACCAAGUCUACACAAAGGGGCCAGAUAGCCUGCCUUUGAAUCGUACUUUAUUACUAGUAGCUGUGUGAUCAUCUUAACAGAUAAGUUACUUAAACUCAGCCUCACUUUUAUCAUUUAAAAAAUGUAACAAAUACUUAAGAUUUUUUUUUUUUGAGAAUUAAAUGAAUUGGCCGGGCACAAUGGCCCACGCCUGUAAUCCCAGCUAUUUGGGAGGCUGAGGCAGGAGAAUCACUUGAACCCAGGAGGUGGAGGUUGCAGUGAGCCGAGACUGCAUCACUGCACUCCAGUCUGGGCAACACAGCAAGACUGUAUCUCAAAAAAAGAAAAACAAAAAACAAGCAAAAAAAGAAUUAAAUAAAUUAUCACACAUAUGACACUUAGAAUUGCACCUGGCACAUUAAUUAAUAAAAGCUUGUAAAUUUU
Sequence (MODOMICS CODE ENCODING) GC2000000006AGUUCCACUCCCGCCUGCCAGCCCUCAACUCCCGGUCGGGUUGUCUCCCCGCCGGUCUCCCGCCCCCAGCUACCGGGUCCGCCAGGGUCAGGAGCCCGAGAUUCGCCGCCCGUCGUAGCGGCCCGCUUCGGCCCCUCGGGGCCCGGGGCUCUCCGGGACCUACACAGCCCGGGAGACUCCGGCGGGGCUGCCUGCCCUCGCCCGAGCCCGGGGGCCCAAGCUGCGGCAGCGGCUCCCAACGCCUCUGCUCGAGGAGAGCGGCGGCCUGGAUGCCCCAGCGCCCUCCCUGUCCAGUUCCUUGAAGGCCCCCAAGAGGGGCGAGGCCGGGGAGGUGCUGGAGCGGGGCCAAGUGAGCUUUCGGGGCCGCGGUUGA2000000006ACUGGAGUCUUGAGUGCGCUGCGGUCAGUGGAGGCCCUUCCACCCUCGCCGCGCCCCGUGGGGAAUAGUCCCCCACCUCCCGCCAUGGCUGCAGCAGGAGGAGACGACGUCCUCCAUUUUGUCGGGACAACUGUGGGAACUUGGGACCCCUCAAAACCAAACCCCGUGGGGCCAGG2000000006ACUUGUCCCGGAAGCCCCGACUGGGCUCUGCCAUUCGG2000000006ACAAGGGAACAGCCCCAGCUGCCGGCGUCUGCGUCCGCGGGGCAGUACUGGUCGGGCGCGACGGUGGAGACACCCAGACGCAGCUCCCCGCCUCCAUCAACCAAGAUGGAGGGAGCUGCAGGCUCCCUUGGAGCUGGGCUCUCGCGGGUUGGAGGGGCUGAGGCCUGCCCUGGGGCGUCCCUGGGCGCCGCCGUCCUGUGCUAGCAGCCCGGGGCGCUGGCCCUGCCUAGGCCUUUUUACUGCCUGCCACCGUCUCCUGGUCCGGAAUGGUUGAUGGAGACUCCAUGGAGGCUCCCUCCACAGCCCGCUCUAUCGCGGGGCGCACCCGCUGCGGCCCCUGCGGGGAGCAGAAUCAGGG2000000006ACAGAUGGCGCCCGGUGAGGGCGGGCCCCACAGGCCACCUCCACGAGGGGUCUUCUCUUUUGUUCCUCGUCUACACCUACGUCUUCGGCGGAUGUCAUGGUGCUGAACCAUUUCCCGG2000000006ACUCCACGUAAAGAUGGAAGCGAUUCCGCUUUCGUCUCGCCCUGGCGGUUCUUAGUGGGAUUACAAUUGAGGAUGUUAGUUUGGAUGAAAGUUGGUGAAAUACUUACCUUAUGUCUGGAAAUACAGAUAAUGUGAUUUUUAAAAAACACAUUGAGCCCCGUUUUACUUCUGUGGUAUGGUAAAGGCACAGGUUUAUUCAAUGAAAAUCAGACGUUAACCAUCUAAUGCAGGGGUGGCCAAUCUUUUGGCUUCCCGGGGCCACAUUGGAAGAAUUGGCUUGGGCCACACAUAAAAUACGCUAACAGUAACAAUAGCUGAUGAGCUAAAACAAACGAAAAAACCAAAACGCCAAAAAAAUCUCAUAACGUUUUAAGAAAAUUUACAAAUAUGUGUUGGGCUGCAUUCAAAGCCGUCCUGGGCCGCAUGCAACCCCCAAGGGCUGCAGGUUGGACAAGCUUGAUCUAAGACAAAAGCAUGUUCACGGAUUGAUGAGAGUUCUGUGUAAGCCUUUGCAUAUUGCAUAGUGCUGUAUGUCAUGGAUAUGCCUAAUAUCACCUACAUUUUUUAGGUCCUCAGUUACUCUUUGGAAAUAAGUGAAUUACAUGUAAUGUCAUCAUUUUAAUGACUGCUGUAAAUUACAAGCACUGACUACCCUGAGUUCGUGGAGAAGGGCUCCAUAGAGAAAAUUUGAAGGUCUGACAGAAACUUUAAAUGGUAAGCUCAGUAGCCACUUGUCAUCUAUUUUCUGAUUAUCUUUUUCACAAUUUUUUGGCAUUGAUACUGUUCAAAGAUUAAAAUUGGGUAACAUUUCUUUUUCCUGAUAGUGGCAGGAAUGACAGGUUCAUGUCCCAAUGAAAACGCUCACCUCAGUAUGCUGCCAUGAUUUCGAGGGUUGUCGAAAAUUUAGGAAAAAAAAGUCUUCAUUGUUCAACAAGAUAGUGUCAUUUAUUGUAAAUCUUUUGAUAAUUCAGGACUCCCGGCUAAUACAAAGUCACAGCAUUAUGACCAAGUCUACACAAAGGGGCCAGAUAGCCUGCCUUUGAAUCGUACUUUAUUACUAGUAGCUGUGUGAUCAUCUUAACAGAUAAGUUACUUAAACUCAGCCUCACUUUUAUCAUUUAAAAAAUGUAACAAAUACUUAAGAUUUUUUUUUUUUGAGAAUUAAAUGAAUUGGCCGGGCACAAUGGCCCACGCCUGUAAUCCCAGCUAUUUGGGAGGCUGAGGCAGGAGAAUCACUUGAACCCAGGAGGUGGAGGUUGCAGUGAGCCGAGACUGCAUCACUGCACUCCAGUCUGGGCAACACAGCAAGACUGUAUCUCAAAAAAAGAAAAACAAAAAACAAGCAAAAAAAGAAUUAAAUAAAUUAUCACACAUAUGACACUUAGAAUUGCACCUGGCACAUUAAUUAAUAAAAGCUUGUAAAUUUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 3 376 552 590 948 1066
Modification Positions m6A m6A m6A m6A m6A m6A
Genomic Coordinates 13:19863840:+ 13:19864213:+ 13:19864389:+ 13:19864427:+ 13:19864785:+ 13:19864903:+
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
msuJfBpJvM5H
VyCX26p5UBRL
msuJfBpJvM5H
VyCX26p5UBRL
5FhTyQVy2tKW
5Nnepx5V7yHo
aHkqKEJkRYyb
Mg9GixDBFQAT
VyCX26p5UBRL
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
msuJfBpJvM5H
VyCX26p5UBRL
5FhTyQVy2tKW
5Nnepx5V7yHo
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
Lny8GcCeVGc9
Yfn77uLS5tv8