General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000650424
Gene ID:	ENSG00000187498
Gene Name:	COL4A1
Sequence (UNICHARACTER ENCODING)	CCAAGGGAGACCCUGGAUUCCAGGGCAUGCCUGGUAUUGGUGGCUCUCCAGGAAUCACAGGCUCUAAGGGUGAUAUGGGGCCUCCAGGAGUUCCAGGAUUUCAAGGUCCAAAAGGUCUUCCUGGCCUCCAGGGAAUUAAAGGUGAUCAAGGCGAUCAAGGCGUCCCGGGAGCUAAAGGUCUCCCGGGUCCUCCUGGCCCCCCAGGUCCUUACGACAUCAUCAAAGGGGAGCCCGGGCUCCCUGGUCCUGAGGGCCCCCCAGGGCUGAAAGGGCUUCAGGGACUGCCAGGCCCGAAAGGCCAGCAAGGUGUUACAGGAUUGGUGGGUAUACCUGGACCUCCAGGUAUUCCUGGGUUUGACGGUGCCCCUGGCCAGAAAGGAGAGAUGGGACCUGCCGGGCCUACUGGUCCAAGAGGAUUUCCAGGUCCACCAGGCCCCGAUGGGUUGCCAGGAUCCAUGGGGCCCCCAGGCACCCCAUCUGUUGAUCACGGCUUCCUUGUGACCAGGCAUAGUCAAACAAUAGAUGACCCACAGUGUCCUUCUGGGACCAAAAUUCUPUACCACGGGUACUCUUUGCUCUACGUGCAAGGCAAUGAACGGGCCCAUGGCCAGGACUUGGGCACGGCCGGCAGCUGCCUGCGCAAGUUCAGCACAAUGCCCUUCCUGUUCUGCAAUAUUAACAACGUGUGCAACUUUGCAUCACGAAAUGACUACUCGUACUGGCUGUCCACCCCUGAGCCCAUGCCCAUGUCAAUGGCACCCAUCACGGGGGAAAACAUAAGACCAUUUAUUAGUAGGUGUGCUGUGUGUGAGGCGCCUGCCAUGGUGAUGGCCGUGCACAGCCAGACCAUUCAGAUCCCACCGUGCCCCAGCGGGUGGUCCUCGCUGUGGAUCGGCUACUCUUUUGUGAUGCACACCAGCGCUGGUGCAGAAGGCUCUGGCCAAGCCCUGGCGUCCCCCGGCUCCUGCCUGGAGGAGUUUAGAAGUGCGCCAUUCAUCGAGUGUCACGGCCGUGGGACCUGCAAUUACUACGCAAACGCUUACAGCUUUUGGCUCGCCACCAUAGAGAGGAGCGAGAUGAAGCCUACGCCGUCCACCUUGAAGGCAGGGGAGCUGCGCACGCACGUCAGCCGCUGCCAAGUCUGUAUGAGAAGAACAUAAUGAAGCCUGACUCAGCUAAUGUCACAACAUGGUGCUACUUCUUCUUCUUUUUGUUAACAGCAACGAACCCUAGAAAUAUAUCCUGUGUACCUCACUGUCCAAUAUGAAAACCGUAAAGUGCCUUAUAGGAAUUUGCGUAACUAЖCACACCCUGCUUCAUUGЖCCUCUACUUGCUGAAGGAGAAAAAGЖCAGCGAUAAGCUUUCAAUAGUGGCAUACCAAAUGGCACUUUUGAUGAAAUAAAAUAUCAAUAUUUUCUGCAAUCCAAUGCACUGAUGUGUGAAGUGAGAЖCUCCAUCAGAAAACCAAAGGGUGCUAGGAGGUGUGGGUGCCUUCCAUACUGUUUGCCCAUUUUCAUUCUUGUAUUAUAAUUAAUUUUCUACCCCCAGAGAUAAAUGUUUGUUUAUAUCACUGUCUAGCUGUUUCAAAAUUUAGGUCCCUUGGUCUGUACAAAUAAUAGCAAUGUAAAAAUGGUUUUUUGAACCUCCAAAUGGAAUUACAGACUCAGUAGCCAUAUCUUCCAACCCCCCAGUAUAAAUUUCUGUCUUUCUGCUAUGUGUGGUACUUUGCAGCUGCUUUUGCAGAAAUCACAAUUUUCCUGUGGAAUAAAGAUGGUCCAAAAAUAGUCAAAAAUUAAAUAUAUAUAUAUAUUAGUAAUUUAUAUAGAUGUCAGCAAUUAGGCAGAUCAAGGUUUAGUUUAACUUCCACUGUUAAAAUAAAGCUUACAUAGUUUUCUUCCUUUGAAAGACUGUGCUGUCCUPUAЖCAUAGGUUUUUAAAGACUAGGAUAUUGAAUGUGAAACAPCCGUUUUCAUUGUUCACUUCUAAACCAAAAAUUAUGUGUUGCCAAAACCAAACCCAGGUUCAUGAAUAUGGUGUCUAUUAUAGUGAAACAUGUACUUUGAGCUUAUUGUUUUUAUUCUGUAUUAAAUAUUUUCAGGGUUUUAAЖCACUAAUCACAAACUGAAUGACUUGACUUCAAAAGCAACAACCUUAAAGGCCGUCAUUUCAUUAGUAUUCCUCAUUCUGCAPCCUGGCUUGAAAAЖCAGCUCUGUUGAAUCACAGUAUCAGUAUUUUCACACGUAAGCACAUUCGGGCCAUUUCCGUGGUUUCUCAUGAGCUGUGUUCACAGACCUCAGCAGGGCAUCGCAUGGЖCCGCAGGAGGGCAGAUUCGGACCACUAGGCCUGAAAUGACAUUUCACUAAAAGUCUCCAAAACAUUUCUAAGACUACUAAGGCCUUUUAUGUAAUUUCUPUAAA
Sequence (SHORT NAMES ENCODING)	CCAAGGGAGACCCUGGAUUCCAGGGCAUGCCUGGUAUUGGUGGCUCUCCAGGAAUCACAGGCUCUAAGGGUGAUAUGGGGCCUCCAGGAGUUCCAGGAUUUCAAGGUCCAAAAGGUCUUCCUGGCCUCCAGGGAAUUAAAGGUGAUCAAGGCGAUCAAGGCGUCCCGGGAGCUAAAGGUCUCCCGGGUCCUCCUGGCCCCCCAGGUCCUUACGACAUCAUCAAAGGGGAGCCCGGGCUCCCUGGUCCUGAGGGCCCCCCAGGGCUGAAAGGGCUUCAGGGACUGCCAGGCCCGAAAGGCCAGCAAGGUGUUACAGGAUUGGUGGGUAUACCUGGACCUCCAGGUAUUCCUGGGUUUGACGGUGCCCCUGGCCAGAAAGGAGAGAUGGGACCUGCCGGGCCUACUGGUCCAAGAGGAUUUCCAGGUCCACCAGGCCCCGAUGGGUUGCCAGGAUCCAUGGGGCCCCCAGGCACCCCAUCUGUUGAUCACGGCUUCCUUGUGACCAGGCAUAGUCAAACAAUAGAUGACCCACAGUGUCCUUCUGGGACCAAAAUUCUYUACCACGGGUACUCUUUGCUCUACGUGCAAGGCAAUGAACGGGCCCAUGGCCAGGACUUGGGCACGGCCGGCAGCUGCCUGCGCAAGUUCAGCACAAUGCCCUUCCUGUUCUGCAAUAUUAACAACGUGUGCAACUUUGCAUCACGAAAUGACUACUCGUACUGGCUGUCCACCCCUGAGCCCAUGCCCAUGUCAAUGGCACCCAUCACGGGGGAAAACAUAAGACCAUUUAUUAGUAGGUGUGCUGUGUGUGAGGCGCCUGCCAUGGUGAUGGCCGUGCACAGCCAGACCAUUCAGAUCCCACCGUGCCCCAGCGGGUGGUCCUCGCUGUGGAUCGGCUACUCUUUUGUGAUGCACACCAGCGCUGGUGCAGAAGGCUCUGGCCAAGCCCUGGCGUCCCCCGGCUCCUGCCUGGAGGAGUUUAGAAGUGCGCCAUUCAUCGAGUGUCACGGCCGUGGGACCUGCAAUUACUACGCAAACGCUUACAGCUUUUGGCUCGCCACCAUAGAGAGGAGCGAGAUGAAGCCUACGCCGUCCACCUUGAAGGCAGGGGAGCUGCGCACGCACGUCAGCCGCUGCCAAGUCUGUAUGAGAAGAACAUAAUGAAGCCUGACUCAGCUAAUGUCACAACAUGGUGCUACUUCUUCUUCUUUUUGUUAACAGCAACGAACCCUAGAAAUAUAUCCUGUGUACCUCACUGUCCAAUAUGAAAACCGUAAAGUGCCUUAUAGGAAUUUGCGUAACUAm6ACACACCCUGCUUCAUUGm6ACCUCUACUUGCUGAAGGAGAAAAAGm6ACAGCGAUAAGCUUUCAAUAGUGGCAUACCAAAUGGCACUUUUGAUGAAAUAAAAUAUCAAUAUUUUCUGCAAUCCAAUGCACUGAUGUGUGAAGUGAGAm6ACUCCAUCAGAAAACCAAAGGGUGCUAGGAGGUGUGGGUGCCUUCCAUACUGUUUGCCCAUUUUCAUUCUUGUAUUAUAAUUAAUUUUCUACCCCCAGAGAUAAAUGUUUGUUUAUAUCACUGUCUAGCUGUUUCAAAAUUUAGGUCCCUUGGUCUGUACAAAUAAUAGCAAUGUAAAAAUGGUUUUUUGAACCUCCAAAUGGAAUUACAGACUCAGUAGCCAUAUCUUCCAACCCCCCAGUAUAAAUUUCUGUCUUUCUGCUAUGUGUGGUACUUUGCAGCUGCUUUUGCAGAAAUCACAAUUUUCCUGUGGAAUAAAGAUGGUCCAAAAAUAGUCAAAAAUUAAAUAUAUAUAUAUAUUAGUAAUUUAUAUAGAUGUCAGCAAUUAGGCAGAUCAAGGUUUAGUUUAACUUCCACUGUUAAAAUAAAGCUUACAUAGUUUUCUUCCUUUGAAAGACUGUGCUGUCCUYUAm6ACAUAGGUUUUUAAAGACUAGGAUAUUGAAUGUGAAACAYCCGUUUUCAUUGUUCACUUCUAAACCAAAAAUUAUGUGUUGCCAAAACCAAACCCAGGUUCAUGAAUAUGGUGUCUAUUAUAGUGAAACAUGUACUUUGAGCUUAUUGUUUUUAUUCUGUAUUAAAUAUUUUCAGGGUUUUAAm6ACACUAAUCACAAACUGAAUGACUUGACUUCAAAAGCAACAACCUUAAAGGCCGUCAUUUCAUUAGUAUUCCUCAUUCUGCAYCCUGGCUUGAAAAm6ACAGCUCUGUUGAAUCACAGUAUCAGUAUUUUCACACGUAAGCACAUUCGGGCCAUUUCCGUGGUUUCUCAUGAGCUGUGUUCACAGACCUCAGCAGGGCAUCGCAUGGm6ACCGCAGGAGGGCAGAUUCGGACCACUAGGCCUGAAAUGACAUUUCACUAAAAGUCUCCAAAACAUUUCUAAGACUACUAAGGCCUUUUAUGUAAUUUCUYUAAA
Sequence (MODOMICS CODE ENCODING)	CCAAGGGAGACCCUGGAUUCCAGGGCAUGCCUGGUAUUGGUGGCUCUCCAGGAAUCACAGGCUCUAAGGGUGAUAUGGGGCCUCCAGGAGUUCCAGGAUUUCAAGGUCCAAAAGGUCUUCCUGGCCUCCAGGGAAUUAAAGGUGAUCAAGGCGAUCAAGGCGUCCCGGGAGCUAAAGGUCUCCCGGGUCCUCCUGGCCCCCCAGGUCCUUACGACAUCAUCAAAGGGGAGCCCGGGCUCCCUGGUCCUGAGGGCCCCCCAGGGCUGAAAGGGCUUCAGGGACUGCCAGGCCCGAAAGGCCAGCAAGGUGUUACAGGAUUGGUGGGUAUACCUGGACCUCCAGGUAUUCCUGGGUUUGACGGUGCCCCUGGCCAGAAAGGAGAGAUGGGACCUGCCGGGCCUACUGGUCCAAGAGGAUUUCCAGGUCCACCAGGCCCCGAUGGGUUGCCAGGAUCCAUGGGGCCCCCAGGCACCCCAUCUGUUGAUCACGGCUUCCUUGUGACCAGGCAUAGUCAAACAAUAGAUGACCCACAGUGUCCUUCUGGGACCAAAAUUCU2000000009UUACCACGGGUACUCUUUGCUCUACGUGCAAGGCAAUGAACGGGCCCAUGGCCAGGACUUGGGCACGGCCGGCAGCUGCCUGCGCAAGUUCAGCACAAUGCCCUUCCUGUUCUGCAAUAUUAACAACGUGUGCAACUUUGCAUCACGAAAUGACUACUCGUACUGGCUGUCCACCCCUGAGCCCAUGCCCAUGUCAAUGGCACCCAUCACGGGGGAAAACAUAAGACCAUUUAUUAGUAGGUGUGCUGUGUGUGAGGCGCCUGCCAUGGUGAUGGCCGUGCACAGCCAGACCAUUCAGAUCCCACCGUGCCCCAGCGGGUGGUCCUCGCUGUGGAUCGGCUACUCUUUUGUGAUGCACACCAGCGCUGGUGCAGAAGGCUCUGGCCAAGCCCUGGCGUCCCCCGGCUCCUGCCUGGAGGAGUUUAGAAGUGCGCCAUUCAUCGAGUGUCACGGCCGUGGGACCUGCAAUUACUACGCAAACGCUUACAGCUUUUGGCUCGCCACCAUAGAGAGGAGCGAGAUGAAGCCUACGCCGUCCACCUUGAAGGCAGGGGAGCUGCGCACGCACGUCAGCCGCUGCCAAGUCUGUAUGAGAAGAACAUAAUGAAGCCUGACUCAGCUAAUGUCACAACAUGGUGCUACUUCUUCUUCUUUUUGUUAACAGCAACGAACCCUAGAAAUAUAUCCUGUGUACCUCACUGUCCAAUAUGAAAACCGUAAAGUGCCUUAUAGGAAUUUGCGUAACUA2000000006ACACACCCUGCUUCAUUG2000000006ACCUCUACUUGCUGAAGGAGAAAAAG2000000006ACAGCGAUAAGCUUUCAAUAGUGGCAUACCAAAUGGCACUUUUGAUGAAAUAAAAUAUCAAUAUUUUCUGCAAUCCAAUGCACUGAUGUGUGAAGUGAGA2000000006ACUCCAUCAGAAAACCAAAGGGUGCUAGGAGGUGUGGGUGCCUUCCAUACUGUUUGCCCAUUUUCAUUCUUGUAUUAUAAUUAAUUUUCUACCCCCAGAGAUAAAUGUUUGUUUAUAUCACUGUCUAGCUGUUUCAAAAUUUAGGUCCCUUGGUCUGUACAAAUAAUAGCAAUGUAAAAAUGGUUUUUUGAACCUCCAAAUGGAAUUACAGACUCAGUAGCCAUAUCUUCCAACCCCCCAGUAUAAAUUUCUGUCUUUCUGCUAUGUGUGGUACUUUGCAGCUGCUUUUGCAGAAAUCACAAUUUUCCUGUGGAAUAAAGAUGGUCCAAAAAUAGUCAAAAAUUAAAUAUAUAUAUAUAUUAGUAAUUUAUAUAGAUGUCAGCAAUUAGGCAGAUCAAGGUUUAGUUUAACUUCCACUGUUAAAAUAAAGCUUACAUAGUUUUCUUCCUUUGAAAGACUGUGCUGUCCU2000000009UUA2000000006ACAUAGGUUUUUAAAGACUAGGAUAUUGAAUGUGAAACA2000000009UCCGUUUUCAUUGUUCACUUCUAAACCAAAAAUUAUGUGUUGCCAAAACCAAACCCAGGUUCAUGAAUAUGGUGUCUAUUAUAGUGAAACAUGUACUUUGAGCUUAUUGUUUUUAUUCUGUAUUAAAUAUUUUCAGGGUUUUAA2000000006ACACUAAUCACAAACUGAAUGACUUGACUUCAAAAGCAACAACCUUAAAGGCCGUCAUUUCAUUAGUAUUCCUCAUUCUGCA2000000009UCCUGGCUUGAAAA2000000006ACAGCUCUGUUGAAUCACAGUAUCAGUAUUUUCACACGUAAGCACAUUCGGGCCAUUUCCGUGGUUUCUCAUGAGCUGUGUUCACAGACCUCAGCAGGGCAUCGCAUGG2000000006ACCGCAGGAGGGCAGAUUCGGACCACUAGGCCUGAAAUGACAUUUCACUAAAAGUCUCCAAAACAUUUCUAAGACUACUAAGGCCUUUUAUGUAAUUUCU2000000009UUAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	557	1304	1322	1348	1448	1917	1920	1959	2103	2185	2199	2308	2408
Modification Positions	Y	m6A	m6A	m6A	m6A	Y	m6A	Y	m6A	Y	m6A	m6A	Y
Genomic Coordinates	13:110162291:-	13:110150219:-	13:110150201:-	13:110150175:-	13:110150075:-	13:110149606:-	13:110149603:-	13:110149564:-	13:110149420:-	13:110149338:-	13:110149324:-	13:110149215:-	13:110149115:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq S9vNeQQYrhac	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac