Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000375954
Gene ID: ENSG00000134899
Gene Name: ERCC5
Sequence (UNICHARACTER ENCODING) CACCACAAGCUGGAUGUGAGUGUGCUUAUGGAUCCUGAGGUAUAACUGUCUCAGGCCUUUUCAGCAACAGUGCCAGGAAGUAUAUUUAUGUAUACAUAUACAUGCACACACACAUCUAUAUUUAUUUCUAUGUCUAUCUGUACUAAAAUCCAUGAGUUUAUACUGACAUCUGCAAUUCCAUGGGGUUCAGUCUAGCCUCCUGCUUCUUUAUAGUUUCCCUAACAAUGAGAAACAUUGCUCCCCUUAUCCUCAAUACAUUUACAUCUGCUUAUUCUCCCUGGAUAUGUAACCAUCUCCCCCUCCCACUGGCCUCCUCCUUGGCCCUGCUCUCUUCUUUGCUUCAGCUGUGUCCUUGGUGCCAGCUCCCAGUCCCUGAGAGCCCCCUCCUCUGUUCUGAUUGUCUCCUUAAACCCAGCUGGACAGGCCUUGCCAGCCCUCUCCACCUACAGGGAAGGAAGGCAACCAUUAAAUAUAUUUUAAGGAGAAGGAAAGACAGUAAGACAGUAAGAGAGGAGAGAAGGGAAGUGGAAGAGGAAGAACUAUUUCUUAGUCACAGCUUUAUUCUGUGCUGUGUAAAUAGCAUAAAAACAUACUGAGCAACUUCCAUGAUUGUUUAUAUACUUUGAUAAUCCUCCUUUUUGAAUUUUUAAAACAAUGUCAGUUAACUUAGAACAUAUUUAUAUAAAGCGAAUAUACAAAUCUUAAGAGAGUUUCCUACUUUCAAAGACAGUGCCAGUUUACCUAAUUGAAAAGGCUUGUUUUGAAGUUACAGGCAUUUGUGAUUACAUUUAUUUAUUAAUAACGCUACUAUUACAUGUAUUCUGUUAUAGUCAUAUCUUUCCUUUUUAGGAUGUAGCAUUUUUCAGGUUCCUCCAGAAAGCUCUUGAUGAUUGCAGGAUCAUUUUAAUGUUUUGAUUGUAGAUGAAGUGACCUUUUAAUUUUGGUACAGGAAGUUUCAUUGAAGUGCAAAGUGUGAUUAGUGAUGAGGAACUUCAAGCAGAAUUCCCUGAAACUUCCAAACCUCCCUCAGAACAAGGCGAAGAGGAACUGGUAGGAACUAGGGAGGGAGAAGCCCCUGCUGAGUCCGAGAGCCUCCUGAGGGACAACUCUGAGAGGGACGACGUGGAUGGUGAGCCACAGGAAGCUGAGAAAGAUGCGGAAGAUUCGCUCCAUGAAUGGCAAGAUAUUAAUUUGGUAAUACCGUAACAUUGUGUUUCGACUUCUUGCUGAGGAAGCCAGGUUAAGUAGGUUUUGAGUUUUAAGGAGUUGGUGGAUGAGUAUUUAGUAGCUAUUUGCAGUACAUCUUGUGGUUGCUGAUGGCUUCAUUUUUGUGUAGGUUACUGGCUGGGAUAGACUCCGUUUUCCAUGUGGUUUAGUGAUGAAUCUCUAAAGAUAUUACAGAGUCUUGGUUAGACAUCCAGUGGAGUACUUCCUAAGGAGAAAGAGCUUAUUGGUAAUUUCAGUCAGACUAAAUGCAGGCUUUUUGUAAACAAAACUCAUUUGGAUUAUUAAUAUAAAUCUAUAAAUGAAAAAACAUUUUAUAGGAGGAGUUGGAAACUCUGGAGAGCAACCUCUUAGCACAGCAGAAUUCACUGAAAGCUCAAAAACAGCAGCAAGAACGGAUCGCUGCUACUGUCACCGGACAGAUGUUCCUGGAAAGCCAGGAACUCCUGCGCCUGUUCGGCAUUCCCUACAUCCAGGCUCCCAUGGAAGCAGAGGCGCAGUGCGCCAUCCUGGACCUGACUGAUCAGACUUCCGGAACCAUCACUGAUGACAGUGAUAUCUGGCUGUUUGGAGCGCGGCAUGUCUAUAGAAACUUUUUUAAUAAAAACAAGUUUGUAGAAUAUUAUCAAUAUGUGGACUUUCACAAUCAAUUGGGAUUGGACCGGAAUAAGUUAAUAAAUUUGGCUUAUUUGCUUGGAAGUGAUUAUACCGAAGGAAUACCAACUGUGGGUUGUGUAACCGCCAUGGAAAUUCUCAAUGAAUUCCCUGGGCAUGGCCUGGAACCUCUCCUAAAAUUCUCAGAAUGGUGGCAUGAAGCUCAAAAAAAUCCAAAGAUAAGACCUAAUCCUCAUGACACCAAAGUGAAAAAAAAAUUACGGACAUUGCAACUCACCCCUGGCUUUCCUAACCCAGCUGUUGCCGAGGCCUACCUCAAACCCGUGGUGGAUGACUCGAAGGGAUCCUUUCUGUGGGGGAAACCUGAUCUCGACAAAAUUAGAGAAUUUUGUCAGCGGUAUUUCGGCUGGAACAGAACGAAGACAGAUGAAUCUCUGUUUCCUGUAUUAAAGCAACUCGAUGCCCAGCAGACACAGCUCCGAAUUGAUUCCUUCUPUAGAUUAGCACAACAGGAGAAAGAAGAUGCUAAACGUAUUAAGAGCCAGAGЖCUAAЖCAGAGCUGUGACAUGUAUGCUAAGGAAAGAGAAAGAAGCAGCAGCCAGCGAAAUAGAAGCAGUUUCUGUUGCCAUGGAGAAAGAAUUUGAGCUACUUGAUAAGGCAAAAGGAAAAACCCAGAAGAGAGGCAUAACAAAUACCUUAGAAGAGUCAUCAAGCCUGAAAAGAAAGAGGCUUUCAGAUUCUAAAGGAAAGAAUACAUGCGGUGGЖUUUUUGGGGGAGЖCCUGCCUCUCAGAAUCAUCUGAUGGAUCUUCAAGUGAAGAUGCUGAAAGUUCAUCUPUAAUGAAUGUACAAAGGAGAЖCAGCUGCGAAAGAGCCAAAAACCAGUGCUUCAGAUUCGCAGAACUCAGUGAAGGAAGCUCCCGUGAAGAAUGGAGGUGCGACCACCAGCAGCUCUAGUGAUAGUGAUGACGAUGGAGGGAAAGAGAAGAUGGUCCUCGUGACCGCCAGAUCUGUGUUUGGGAAGAAAAGAAGGAAACUAAGACGUGCGAGGGGAAGAAAAAGGAAAACCUAAUUAAAAAAUAUGUAUCCUCUAUAAUUAGUUAUGACAGCCAUUUGUAAUGAAUUUGUCGCAAAGACGUAAUAAAAUUAЖCU
Sequence (SHORT NAMES ENCODING) CACCACAAGCUGGAUGUGAGUGUGCUUAUGGAUCCUGAGGUAUAACUGUCUCAGGCCUUUUCAGCAACAGUGCCAGGAAGUAUAUUUAUGUAUACAUAUACAUGCACACACACAUCUAUAUUUAUUUCUAUGUCUAUCUGUACUAAAAUCCAUGAGUUUAUACUGACAUCUGCAAUUCCAUGGGGUUCAGUCUAGCCUCCUGCUUCUUUAUAGUUUCCCUAACAAUGAGAAACAUUGCUCCCCUUAUCCUCAAUACAUUUACAUCUGCUUAUUCUCCCUGGAUAUGUAACCAUCUCCCCCUCCCACUGGCCUCCUCCUUGGCCCUGCUCUCUUCUUUGCUUCAGCUGUGUCCUUGGUGCCAGCUCCCAGUCCCUGAGAGCCCCCUCCUCUGUUCUGAUUGUCUCCUUAAACCCAGCUGGACAGGCCUUGCCAGCCCUCUCCACCUACAGGGAAGGAAGGCAACCAUUAAAUAUAUUUUAAGGAGAAGGAAAGACAGUAAGACAGUAAGAGAGGAGAGAAGGGAAGUGGAAGAGGAAGAACUAUUUCUUAGUCACAGCUUUAUUCUGUGCUGUGUAAAUAGCAUAAAAACAUACUGAGCAACUUCCAUGAUUGUUUAUAUACUUUGAUAAUCCUCCUUUUUGAAUUUUUAAAACAAUGUCAGUUAACUUAGAACAUAUUUAUAUAAAGCGAAUAUACAAAUCUUAAGAGAGUUUCCUACUUUCAAAGACAGUGCCAGUUUACCUAAUUGAAAAGGCUUGUUUUGAAGUUACAGGCAUUUGUGAUUACAUUUAUUUAUUAAUAACGCUACUAUUACAUGUAUUCUGUUAUAGUCAUAUCUUUCCUUUUUAGGAUGUAGCAUUUUUCAGGUUCCUCCAGAAAGCUCUUGAUGAUUGCAGGAUCAUUUUAAUGUUUUGAUUGUAGAUGAAGUGACCUUUUAAUUUUGGUACAGGAAGUUUCAUUGAAGUGCAAAGUGUGAUUAGUGAUGAGGAACUUCAAGCAGAAUUCCCUGAAACUUCCAAACCUCCCUCAGAACAAGGCGAAGAGGAACUGGUAGGAACUAGGGAGGGAGAAGCCCCUGCUGAGUCCGAGAGCCUCCUGAGGGACAACUCUGAGAGGGACGACGUGGAUGGUGAGCCACAGGAAGCUGAGAAAGAUGCGGAAGAUUCGCUCCAUGAAUGGCAAGAUAUUAAUUUGGUAAUACCGUAACAUUGUGUUUCGACUUCUUGCUGAGGAAGCCAGGUUAAGUAGGUUUUGAGUUUUAAGGAGUUGGUGGAUGAGUAUUUAGUAGCUAUUUGCAGUACAUCUUGUGGUUGCUGAUGGCUUCAUUUUUGUGUAGGUUACUGGCUGGGAUAGACUCCGUUUUCCAUGUGGUUUAGUGAUGAAUCUCUAAAGAUAUUACAGAGUCUUGGUUAGACAUCCAGUGGAGUACUUCCUAAGGAGAAAGAGCUUAUUGGUAAUUUCAGUCAGACUAAAUGCAGGCUUUUUGUAAACAAAACUCAUUUGGAUUAUUAAUAUAAAUCUAUAAAUGAAAAAACAUUUUAUAGGAGGAGUUGGAAACUCUGGAGAGCAACCUCUUAGCACAGCAGAAUUCACUGAAAGCUCAAAAACAGCAGCAAGAACGGAUCGCUGCUACUGUCACCGGACAGAUGUUCCUGGAAAGCCAGGAACUCCUGCGCCUGUUCGGCAUUCCCUACAUCCAGGCUCCCAUGGAAGCAGAGGCGCAGUGCGCCAUCCUGGACCUGACUGAUCAGACUUCCGGAACCAUCACUGAUGACAGUGAUAUCUGGCUGUUUGGAGCGCGGCAUGUCUAUAGAAACUUUUUUAAUAAAAACAAGUUUGUAGAAUAUUAUCAAUAUGUGGACUUUCACAAUCAAUUGGGAUUGGACCGGAAUAAGUUAAUAAAUUUGGCUUAUUUGCUUGGAAGUGAUUAUACCGAAGGAAUACCAACUGUGGGUUGUGUAACCGCCAUGGAAAUUCUCAAUGAAUUCCCUGGGCAUGGCCUGGAACCUCUCCUAAAAUUCUCAGAAUGGUGGCAUGAAGCUCAAAAAAAUCCAAAGAUAAGACCUAAUCCUCAUGACACCAAAGUGAAAAAAAAAUUACGGACAUUGCAACUCACCCCUGGCUUUCCUAACCCAGCUGUUGCCGAGGCCUACCUCAAACCCGUGGUGGAUGACUCGAAGGGAUCCUUUCUGUGGGGGAAACCUGAUCUCGACAAAAUUAGAGAAUUUUGUCAGCGGUAUUUCGGCUGGAACAGAACGAAGACAGAUGAAUCUCUGUUUCCUGUAUUAAAGCAACUCGAUGCCCAGCAGACACAGCUCCGAAUUGAUUCCUUCUYUAGAUUAGCACAACAGGAGAAAGAAGAUGCUAAACGUAUUAAGAGCCAGAGm6ACUAAm6ACAGAGCUGUGACAUGUAUGCUAAGGAAAGAGAAAGAAGCAGCAGCCAGCGAAAUAGAAGCAGUUUCUGUUGCCAUGGAGAAAGAAUUUGAGCUACUUGAUAAGGCAAAAGGAAAAACCCAGAAGAGAGGCAUAACAAAUACCUUAGAAGAGUCAUCAAGCCUGAAAAGAAAGAGGCUUUCAGAUUCUAAAGGAAAGAAUACAUGCGGUGGm6AUUUUUGGGGGAGm6ACCUGCCUCUCAGAAUCAUCUGAUGGAUCUUCAAGUGAAGAUGCUGAAAGUUCAUCUYUAAUGAAUGUACAAAGGAGAm6ACAGCUGCGAAAGAGCCAAAAACCAGUGCUUCAGAUUCGCAGAACUCAGUGAAGGAAGCUCCCGUGAAGAAUGGAGGUGCGACCACCAGCAGCUCUAGUGAUAGUGAUGACGAUGGAGGGAAAGAGAAGAUGGUCCUCGUGACCGCCAGAUCUGUGUUUGGGAAGAAAAGAAGGAAACUAAGACGUGCGAGGGGAAGAAAAAGGAAAACCUAAUUAAAAAAUAUGUAUCCUCUAUAAUUAGUUAUGACAGCCAUUUGUAAUGAAUUUGUCGCAAAGACGUAAUAAAAUUAm6ACU
Sequence (MODOMICS CODE ENCODING) CACCACAAGCUGGAUGUGAGUGUGCUUAUGGAUCCUGAGGUAUAACUGUCUCAGGCCUUUUCAGCAACAGUGCCAGGAAGUAUAUUUAUGUAUACAUAUACAUGCACACACACAUCUAUAUUUAUUUCUAUGUCUAUCUGUACUAAAAUCCAUGAGUUUAUACUGACAUCUGCAAUUCCAUGGGGUUCAGUCUAGCCUCCUGCUUCUUUAUAGUUUCCCUAACAAUGAGAAACAUUGCUCCCCUUAUCCUCAAUACAUUUACAUCUGCUUAUUCUCCCUGGAUAUGUAACCAUCUCCCCCUCCCACUGGCCUCCUCCUUGGCCCUGCUCUCUUCUUUGCUUCAGCUGUGUCCUUGGUGCCAGCUCCCAGUCCCUGAGAGCCCCCUCCUCUGUUCUGAUUGUCUCCUUAAACCCAGCUGGACAGGCCUUGCCAGCCCUCUCCACCUACAGGGAAGGAAGGCAACCAUUAAAUAUAUUUUAAGGAGAAGGAAAGACAGUAAGACAGUAAGAGAGGAGAGAAGGGAAGUGGAAGAGGAAGAACUAUUUCUUAGUCACAGCUUUAUUCUGUGCUGUGUAAAUAGCAUAAAAACAUACUGAGCAACUUCCAUGAUUGUUUAUAUACUUUGAUAAUCCUCCUUUUUGAAUUUUUAAAACAAUGUCAGUUAACUUAGAACAUAUUUAUAUAAAGCGAAUAUACAAAUCUUAAGAGAGUUUCCUACUUUCAAAGACAGUGCCAGUUUACCUAAUUGAAAAGGCUUGUUUUGAAGUUACAGGCAUUUGUGAUUACAUUUAUUUAUUAAUAACGCUACUAUUACAUGUAUUCUGUUAUAGUCAUAUCUUUCCUUUUUAGGAUGUAGCAUUUUUCAGGUUCCUCCAGAAAGCUCUUGAUGAUUGCAGGAUCAUUUUAAUGUUUUGAUUGUAGAUGAAGUGACCUUUUAAUUUUGGUACAGGAAGUUUCAUUGAAGUGCAAAGUGUGAUUAGUGAUGAGGAACUUCAAGCAGAAUUCCCUGAAACUUCCAAACCUCCCUCAGAACAAGGCGAAGAGGAACUGGUAGGAACUAGGGAGGGAGAAGCCCCUGCUGAGUCCGAGAGCCUCCUGAGGGACAACUCUGAGAGGGACGACGUGGAUGGUGAGCCACAGGAAGCUGAGAAAGAUGCGGAAGAUUCGCUCCAUGAAUGGCAAGAUAUUAAUUUGGUAAUACCGUAACAUUGUGUUUCGACUUCUUGCUGAGGAAGCCAGGUUAAGUAGGUUUUGAGUUUUAAGGAGUUGGUGGAUGAGUAUUUAGUAGCUAUUUGCAGUACAUCUUGUGGUUGCUGAUGGCUUCAUUUUUGUGUAGGUUACUGGCUGGGAUAGACUCCGUUUUCCAUGUGGUUUAGUGAUGAAUCUCUAAAGAUAUUACAGAGUCUUGGUUAGACAUCCAGUGGAGUACUUCCUAAGGAGAAAGAGCUUAUUGGUAAUUUCAGUCAGACUAAAUGCAGGCUUUUUGUAAACAAAACUCAUUUGGAUUAUUAAUAUAAAUCUAUAAAUGAAAAAACAUUUUAUAGGAGGAGUUGGAAACUCUGGAGAGCAACCUCUUAGCACAGCAGAAUUCACUGAAAGCUCAAAAACAGCAGCAAGAACGGAUCGCUGCUACUGUCACCGGACAGAUGUUCCUGGAAAGCCAGGAACUCCUGCGCCUGUUCGGCAUUCCCUACAUCCAGGCUCCCAUGGAAGCAGAGGCGCAGUGCGCCAUCCUGGACCUGACUGAUCAGACUUCCGGAACCAUCACUGAUGACAGUGAUAUCUGGCUGUUUGGAGCGCGGCAUGUCUAUAGAAACUUUUUUAAUAAAAACAAGUUUGUAGAAUAUUAUCAAUAUGUGGACUUUCACAAUCAAUUGGGAUUGGACCGGAAUAAGUUAAUAAAUUUGGCUUAUUUGCUUGGAAGUGAUUAUACCGAAGGAAUACCAACUGUGGGUUGUGUAACCGCCAUGGAAAUUCUCAAUGAAUUCCCUGGGCAUGGCCUGGAACCUCUCCUAAAAUUCUCAGAAUGGUGGCAUGAAGCUCAAAAAAAUCCAAAGAUAAGACCUAAUCCUCAUGACACCAAAGUGAAAAAAAAAUUACGGACAUUGCAACUCACCCCUGGCUUUCCUAACCCAGCUGUUGCCGAGGCCUACCUCAAACCCGUGGUGGAUGACUCGAAGGGAUCCUUUCUGUGGGGGAAACCUGAUCUCGACAAAAUUAGAGAAUUUUGUCAGCGGUAUUUCGGCUGGAACAGAACGAAGACAGAUGAAUCUCUGUUUCCUGUAUUAAAGCAACUCGAUGCCCAGCAGACACAGCUCCGAAUUGAUUCCUUCU2000000009UUAGAUUAGCACAACAGGAGAAAGAAGAUGCUAAACGUAUUAAGAGCCAGAG2000000006ACUAA2000000006ACAGAGCUGUGACAUGUAUGCUAAGGAAAGAGAAAGAAGCAGCAGCCAGCGAAAUAGAAGCAGUUUCUGUUGCCAUGGAGAAAGAAUUUGAGCUACUUGAUAAGGCAAAAGGAAAAACCCAGAAGAGAGGCAUAACAAAUACCUUAGAAGAGUCAUCAAGCCUGAAAAGAAAGAGGCUUUCAGAUUCUAAAGGAAAGAAUACAUGCGGUGG2000000006AUUUUUGGGGGAG2000000006ACCUGCCUCUCAGAAUCAUCUGAUGGAUCUUCAAGUGAAGAUGCUGAAAGUUCAUCU2000000009UUAAUGAAUGUACAAAGGAGA2000000006ACAGCUGCGAAAGAGCCAAAAACCAGUGCUUCAGAUUCGCAGAACUCAGUGAAGGAAGCUCCCGUGAAGAAUGGAGGUGCGACCACCAGCAGCUCUAGUGAUAGUGAUGACGAUGGAGGGAAAGAGAAGAUGGUCCUCGUGACCGCCAGAUCUGUGUUUGGGAAGAAAAGAAGGAAACUAAGACGUGCGAGGGGAAGAAAAAGGAAAACCUAAUUAAAAAAUAUGUAUCCUCUAUAAUUAGUUAUGACAGCCAUUUGUAAUGAAUUUGUCGCAAAGACGUAAUAAAAUUA2000000006ACU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 2335 2387 2392 2603 2616 2673 2694 2984
Modification Positions Y m6A m6A m6A m6A Y m6A m6A
Genomic Coordinates 13:102875332:+ 13:102875384:+ 13:102875389:+ 13:102875600:+ 13:102875613:+ 13:102875670:+ 13:102875691:+ 13:102875981:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
3TeAZFYFxgvp
6UuHp6YApVKv
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
6UuHp6YApVKv
VL7zkHvkfkoB
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
a7o5Kmjr4Tdp