Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000651949
Gene ID: ENSG00000134897
Gene Name: BIVM
Sequence (UNICHARACTER ENCODING) ЖGUUCGCGACAGGACGAGCGGAAAUACUGCCAGGAUUUUACCACCUCUCGCCCAUUUAUUUACUUCUCGGUCACCGCUUUCGGGGGЖCAGAUAAACACCACAGAUGCCCAUCAAAGGGGCGCACGGGUCUGGAGGCGCAGCUCAGGUUUUUGCGUUGGUCACCCUGCCCUCCGCACGUGGAGAGGGCAGGCAUAAAGCACCUUGAAAGGAAGGUGCUGUCAAUGCUAUCCGACGACCUGUCGCCGGGCACCGCAGCAUCCUCGCUCGCUCCGAUGGGACGAGGGACGCCGGCCCCAGGGUAACAGGAGGCGCCUCGCCGGCCGCGCGCUGGAUGCUGUGAUCCAGGUCCGGAGCCGGGUUCCGCCGCGGCCGCAGCGACCCGACCCCACCCGACAGGCCAGAGUCUCGCUCUGUUGCCCAGGCUAGAGUGUAGUGGCGCGAUCUCGGCUCACUGCAACCUCUACCUCCCAGGUUCAAAAACAGAAAGGUCAAAUGAUUCUGGAAAUGGUGAGCACAAAUCUGAGAGAAAGUCACCUGAAGAGAAUCUACAAGGUGCUGUAAAAUCUUUCUGCACAAGUGCCUCAGGAGCACCCUUGGGUCCCAAAGGAGAUGGUCAUUAUCCAUGGAGUUGUCCAGUGЖCUCAUACACGGGAAAAAAUUUAUGCCAUCUGUUCGGЖCUAUGCCUUUCUCAACCAGGCGACCUCAAUCUAUAAAЖCUCCAAAUCCAUCCCGCUCUCCUUGCCUCCCUGAUAGUACCUCUUUAUCUGCUGGAAAUAAUUCAUCAAGAUACAUUGGUAUCCCGACUAGUACAUCGGAAAUUAUCUACAAUGAAGAAAAUAGCUUGGAAAACUUAUCCAACAGCCUGGGCAAGCUACCUCUCGCAUGGGAAAUUGAUAAAUCUGAAUUUGAUGGGGUGACCACAAAUUCGAAACACAAAUCAGGCAAUGCAAAGAAACAAGUUUCCAAGAGAAAAACUUCAGAUAAAAAGGGAAGAUAUCAGAAGGAAUGUCCUCAGCAUUCUCCUCUUGAAGAUAUUAAACAGCGGAAAGUAUUAGACCUCAGACGAUGGUACUGCAUAAGCCGACCACAGUAUAAGACUUCUUGUGGCAUCUCUUCAUUAAUUUCUUGUUGGAAUUUCUUAUACAGCACAAUGGGAGCUGGAAACCUUCCACCUAUUACCCAAGAAGAAGCUUUACAUAUUCUGGGCUUUCAACCUCCAUUUGAAGAUAUUAGGUUUGGUCCUUUCACGGGGAAUACAACACUUAUGAGGUGGUUUAGACAAAUUAAUGACCACUUCCAUGUAAAAGGAUGCUCUUAUGUUCUAUAUAAGCCUCAUGGGAAGAAUAAAACAGCAGGAGAAACUGCUUCAGGGGCCCUGUCAAAGUUAACCCGUGGAUUGAAAGAUGAAUCGCUGGCUUAUAUCUAUCAUUGCCAAAAUCAUUAUUUUUGUCCAAUUGGCUUCGAAGCAACCCCUGUUAAAGCUAAUAAAGCAUUCAGCAGGGGACCUCUCUCACCACAGGAAGUUGAAUAUUGGAUCUUAAUUGGAGAAUCAAGUAGAAAACAUCCUGCCAUUCACUGUAAAAAAUGGGCAGAUAUUGUUACUGAUCUAAACACUCAAAAUCCAGAAUACCUGGAUAUCCGGCACUUAGAGAGGGGACUGCAGUAUAGAAAAACAAAGAAGGUUGGGGGAAAUUUGCAUUGCAUCAUAGCAUUCCAGAGЖCUUAACUGGCAAAGAUUUGGCCUUUGGAЖCUUUCCAUUUGGAACCAUUAGACAAGAAUCACAACCUCCAACACAUGCCCAGGGAAUUGCCAAAUCUGAGAGUGAAGACAAUAUUUCCAAGAAGCAGCAUGGGCGUCUGGGCCGGUCUUUCAGUGCUAGUUUCCAUCAGGЖCUCGGCAUGGAAAAAGAUGUCUAGUAUCCAUGAGAGAAGGAЖCAGUGGUUACCAGGGUUACAGUGAUUACGAUGGGAAUGAUUGACUAUGCUUGCUACUGAACAGCUGGCAUUAUAUAUGAAACUGCUAUAUACAGGЖCUGUAUA
Sequence (SHORT NAMES ENCODING) m6AGUUCGCGACAGGACGAGCGGAAAUACUGCCAGGAUUUUACCACCUCUCGCCCAUUUAUUUACUUCUCGGUCACCGCUUUCGGGGGm6ACAGAUAAACACCACAGAUGCCCAUCAAAGGGGCGCACGGGUCUGGAGGCGCAGCUCAGGUUUUUGCGUUGGUCACCCUGCCCUCCGCACGUGGAGAGGGCAGGCAUAAAGCACCUUGAAAGGAAGGUGCUGUCAAUGCUAUCCGACGACCUGUCGCCGGGCACCGCAGCAUCCUCGCUCGCUCCGAUGGGACGAGGGACGCCGGCCCCAGGGUAACAGGAGGCGCCUCGCCGGCCGCGCGCUGGAUGCUGUGAUCCAGGUCCGGAGCCGGGUUCCGCCGCGGCCGCAGCGACCCGACCCCACCCGACAGGCCAGAGUCUCGCUCUGUUGCCCAGGCUAGAGUGUAGUGGCGCGAUCUCGGCUCACUGCAACCUCUACCUCCCAGGUUCAAAAACAGAAAGGUCAAAUGAUUCUGGAAAUGGUGAGCACAAAUCUGAGAGAAAGUCACCUGAAGAGAAUCUACAAGGUGCUGUAAAAUCUUUCUGCACAAGUGCCUCAGGAGCACCCUUGGGUCCCAAAGGAGAUGGUCAUUAUCCAUGGAGUUGUCCAGUGm6ACUCAUACACGGGAAAAAAUUUAUGCCAUCUGUUCGGm6ACUAUGCCUUUCUCAACCAGGCGACCUCAAUCUAUAAAm6ACUCCAAAUCCAUCCCGCUCUCCUUGCCUCCCUGAUAGUACCUCUUUAUCUGCUGGAAAUAAUUCAUCAAGAUACAUUGGUAUCCCGACUAGUACAUCGGAAAUUAUCUACAAUGAAGAAAAUAGCUUGGAAAACUUAUCCAACAGCCUGGGCAAGCUACCUCUCGCAUGGGAAAUUGAUAAAUCUGAAUUUGAUGGGGUGACCACAAAUUCGAAACACAAAUCAGGCAAUGCAAAGAAACAAGUUUCCAAGAGAAAAACUUCAGAUAAAAAGGGAAGAUAUCAGAAGGAAUGUCCUCAGCAUUCUCCUCUUGAAGAUAUUAAACAGCGGAAAGUAUUAGACCUCAGACGAUGGUACUGCAUAAGCCGACCACAGUAUAAGACUUCUUGUGGCAUCUCUUCAUUAAUUUCUUGUUGGAAUUUCUUAUACAGCACAAUGGGAGCUGGAAACCUUCCACCUAUUACCCAAGAAGAAGCUUUACAUAUUCUGGGCUUUCAACCUCCAUUUGAAGAUAUUAGGUUUGGUCCUUUCACGGGGAAUACAACACUUAUGAGGUGGUUUAGACAAAUUAAUGACCACUUCCAUGUAAAAGGAUGCUCUUAUGUUCUAUAUAAGCCUCAUGGGAAGAAUAAAACAGCAGGAGAAACUGCUUCAGGGGCCCUGUCAAAGUUAACCCGUGGAUUGAAAGAUGAAUCGCUGGCUUAUAUCUAUCAUUGCCAAAAUCAUUAUUUUUGUCCAAUUGGCUUCGAAGCAACCCCUGUUAAAGCUAAUAAAGCAUUCAGCAGGGGACCUCUCUCACCACAGGAAGUUGAAUAUUGGAUCUUAAUUGGAGAAUCAAGUAGAAAACAUCCUGCCAUUCACUGUAAAAAAUGGGCAGAUAUUGUUACUGAUCUAAACACUCAAAAUCCAGAAUACCUGGAUAUCCGGCACUUAGAGAGGGGACUGCAGUAUAGAAAAACAAAGAAGGUUGGGGGAAAUUUGCAUUGCAUCAUAGCAUUCCAGAGm6ACUUAACUGGCAAAGAUUUGGCCUUUGGAm6ACUUUCCAUUUGGAACCAUUAGACAAGAAUCACAACCUCCAACACAUGCCCAGGGAAUUGCCAAAUCUGAGAGUGAAGACAAUAUUUCCAAGAAGCAGCAUGGGCGUCUGGGCCGGUCUUUCAGUGCUAGUUUCCAUCAGGm6ACUCGGCAUGGAAAAAGAUGUCUAGUAUCCAUGAGAGAAGGAm6ACAGUGGUUACCAGGGUUACAGUGAUUACGAUGGGAAUGAUUGACUAUGCUUGCUACUGAACAGCUGGCAUUAUAUAUGAAACUGCUAUAUACAGGm6ACUGUAUA
Sequence (MODOMICS CODE ENCODING) 2000000006AGUUCGCGACAGGACGAGCGGAAAUACUGCCAGGAUUUUACCACCUCUCGCCCAUUUAUUUACUUCUCGGUCACCGCUUUCGGGGG2000000006ACAGAUAAACACCACAGAUGCCCAUCAAAGGGGCGCACGGGUCUGGAGGCGCAGCUCAGGUUUUUGCGUUGGUCACCCUGCCCUCCGCACGUGGAGAGGGCAGGCAUAAAGCACCUUGAAAGGAAGGUGCUGUCAAUGCUAUCCGACGACCUGUCGCCGGGCACCGCAGCAUCCUCGCUCGCUCCGAUGGGACGAGGGACGCCGGCCCCAGGGUAACAGGAGGCGCCUCGCCGGCCGCGCGCUGGAUGCUGUGAUCCAGGUCCGGAGCCGGGUUCCGCCGCGGCCGCAGCGACCCGACCCCACCCGACAGGCCAGAGUCUCGCUCUGUUGCCCAGGCUAGAGUGUAGUGGCGCGAUCUCGGCUCACUGCAACCUCUACCUCCCAGGUUCAAAAACAGAAAGGUCAAAUGAUUCUGGAAAUGGUGAGCACAAAUCUGAGAGAAAGUCACCUGAAGAGAAUCUACAAGGUGCUGUAAAAUCUUUCUGCACAAGUGCCUCAGGAGCACCCUUGGGUCCCAAAGGAGAUGGUCAUUAUCCAUGGAGUUGUCCAGUG2000000006ACUCAUACACGGGAAAAAAUUUAUGCCAUCUGUUCGG2000000006ACUAUGCCUUUCUCAACCAGGCGACCUCAAUCUAUAAA2000000006ACUCCAAAUCCAUCCCGCUCUCCUUGCCUCCCUGAUAGUACCUCUUUAUCUGCUGGAAAUAAUUCAUCAAGAUACAUUGGUAUCCCGACUAGUACAUCGGAAAUUAUCUACAAUGAAGAAAAUAGCUUGGAAAACUUAUCCAACAGCCUGGGCAAGCUACCUCUCGCAUGGGAAAUUGAUAAAUCUGAAUUUGAUGGGGUGACCACAAAUUCGAAACACAAAUCAGGCAAUGCAAAGAAACAAGUUUCCAAGAGAAAAACUUCAGAUAAAAAGGGAAGAUAUCAGAAGGAAUGUCCUCAGCAUUCUCCUCUUGAAGAUAUUAAACAGCGGAAAGUAUUAGACCUCAGACGAUGGUACUGCAUAAGCCGACCACAGUAUAAGACUUCUUGUGGCAUCUCUUCAUUAAUUUCUUGUUGGAAUUUCUUAUACAGCACAAUGGGAGCUGGAAACCUUCCACCUAUUACCCAAGAAGAAGCUUUACAUAUUCUGGGCUUUCAACCUCCAUUUGAAGAUAUUAGGUUUGGUCCUUUCACGGGGAAUACAACACUUAUGAGGUGGUUUAGACAAAUUAAUGACCACUUCCAUGUAAAAGGAUGCUCUUAUGUUCUAUAUAAGCCUCAUGGGAAGAAUAAAACAGCAGGAGAAACUGCUUCAGGGGCCCUGUCAAAGUUAACCCGUGGAUUGAAAGAUGAAUCGCUGGCUUAUAUCUAUCAUUGCCAAAAUCAUUAUUUUUGUCCAAUUGGCUUCGAAGCAACCCCUGUUAAAGCUAAUAAAGCAUUCAGCAGGGGACCUCUCUCACCACAGGAAGUUGAAUAUUGGAUCUUAAUUGGAGAAUCAAGUAGAAAACAUCCUGCCAUUCACUGUAAAAAAUGGGCAGAUAUUGUUACUGAUCUAAACACUCAAAAUCCAGAAUACCUGGAUAUCCGGCACUUAGAGAGGGGACUGCAGUAUAGAAAAACAAAGAAGGUUGGGGGAAAUUUGCAUUGCAUCAUAGCAUUCCAGAG2000000006ACUUAACUGGCAAAGAUUUGGCCUUUGGA2000000006ACUUUCCAUUUGGAACCAUUAGACAAGAAUCACAACCUCCAACACAUGCCCAGGGAAUUGCCAAAUCUGAGAGUGAAGACAAUAUUUCCAAGAAGCAGCAUGGGCGUCUGGGCCGGUCUUUCAGUGCUAGUUUCCAUCAGG2000000006ACUCGGCAUGGAAAAAGAUGUCUAGUAUCCAUGAGAGAAGGA2000000006ACAGUGGUUACCAGGGUUACAGUGAUUACGAUGGGAAUGAUUGACUAUGCUUGCUACUGAACAGCUGGCAUUAUAUAUGAAACUGCUAUAUACAGG2000000006ACUGUAUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1 87 639 676 714 1718 1747 1888 1930 2026
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 13:102799119:+ 13:102799205:+ 13:102807445:+ 13:102807482:+ 13:102807520:+ 13:102839610:+ 13:102839639:+ 13:102839780:+ 13:102839822:+ 13:102839918:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
6UuHp6YApVKv
aivdrAsbdKEU
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
4HMi5ykupT9V
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
Lny8GcCeVGc9
UKen6WEino9G
4HMi5ykupT9V
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
Q36pf44ZRvxu
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BkoLW2CBToyL
nfCHyrYzE6fB
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
4HMi5ykupT9V
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BkoLW2CBToyL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
msuJfBpJvM5H
93arJtwJmuS9
BkoLW2CBToyL
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq