Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000400018
Gene Name: ENSG00000165480
Sequence (UNICHARACTER ENCODING) AGUGGCGGGAGGCUGUGAGCUGAGCGGUGGGGUCUGCGUACGCCUGGAGUCCUUCCCCGCUGUGCUCAGCAUGGACCCUAUCCGGAGCUUCUGCGGGAAGCUGCGGUCUCUGGCCAGCACGCUGGACUGCGAGACGGCCCGGCUGCAGCGAGCGCUGGACGGAGAGGAAAGCGACUUUGAAGAUUAUCCAAUGAGAAUUUUAUAUGACCUUCAUUCAGAAGUUCAGACUCUAAAGGAUGAUGUUAAUAUUCUUCUUGAUAAAGCAAGAUUGGAAAAUCAAGAAGGCAUUGAUUUCAUAAAGGCAACAAAAGUACUAAUGGAAAAAAAUUCAAUGGAUAUUAUGAAAAUAAGAGAGUAUUUCCAGAAGUAUGGAUAUAGUCCACGUGUCAAGAAAAAUUCAGUACACGAGCAAGAAGCCAUUAЖCUCUGACCCAGAGUUGUCUAAUUGUGAAAAUUUUCAGAAGACUGAUGUGAAAGAUGAUCUGUCUGAUCCUCCUGUUGCAAGCAGUUGUAUUUCUGAGAAGUCUCCACGUAGUCCACAACUUUCAGAUUUUGGЖCUUGAGCGGUACAUCGUAUCCCAAGUUCUACCAAACCCUCCACAGGCAGUGAACAACUAUAAGGAAGAGCCCGUAAUUGUAACCCCACCUACCAAACAAUCACUAGUAAAAGUACUAAAAЖCUCCAAAAUGUGCACUAAAAAUGGAUGAUUUUGAGUGUGUAACUCCUAAAUUAGAЖCACUUUGGUAUCUCUGAAUAUACUAUGUGUUUAAAUGAAGAUUACACAAUGGGЖCUUAAAAAUGCGAGGAAUAAUAAAAGUGAGGAGGCCAUAGAUACAGAAUCCAGGCUCAAUGAUAAUGUUUUUGCCACUCCCAGCCCCAUCAUCCAGCAGUUGGAAAAAAGUGAUGCCGAAUAUACCAACUCUCCUUUGGUACCUACAUUCUGUACUCCUGGUUUGAAAAUUCCAUCUACAAAGAACAGCAUAGCUUUGGUAUCCACAAAUUACCCAUUAUCAAAAACAAAUAGUUCAUCAAAUGAUUUGGAAGUUGAAGAUCGUACUUCGUUGGUUUUAAAUUCAGACACAUGCUUUGAGAAUUUAACAGAUCCCUCUUCACCUACGAUUUCUUCUUAUGAGAAUCUGCUCAGAACACCUACACCUCCGGAAGUAACUAAAAUUCCAGAAGAUAUUCUCCAGAAAUUCCAGUGGAUCUAUCCAACACAGAAACUGAACAAAAUGAGAUGAAAGCCGAGCUGGACCGAUUUUAACAUUCACAUUGCCCUGCCUCUGUCCCCCUPUAAACGUUGACCCAUUUUAAAGACAAACAUGAЖCAUUAЖCAUCAUAAUAUGCUUUUUAUGAAGUUUCAAUAAGGUUUAACCUUAGUCUUGUUGACAUGUAGCCCAGUCAUUCACUCUPUAAGGAUUAUUAGUGUUUCAUUGAUACUAAAUUACCCAGCUUAAUCAACAGAAUGGUUUAAGUAGUACCAGGAAGUAGGACAAGUAAUUUCAAAAAUAUAAAGGUGUUUGCUACUCAGAUGAGGCCGCCCCUGACCUUCUGGCCAGAGAGЖCAUUGCUGCCAGCCAGCUCUGCCUUCCCAUCAUCUCCUUUCAGGACCGUCCCACACCUUUUACUUGCUCAGUGCUGUCUGAAGAUGCAGUUGCUGUUUGCAAЖCAACAGGAACACCAGUUAAACUAAUUAGGAAAAGAGGGAGAUUUCCAGGCCUGGGUAACUAUAUACUGUGACCAUUGGAGGUAGAGACAGGUCUCAACAGUUGGAACCAGGAACUCUGCUGUCAGGUUGAGAGUUUUGUUUCUCUUCCAGCUUUUCACUGUGUGGGGGUCUUUUCUCUUAUGUCAGCUCUUUCUAUCACAUGGCAGCUGACCUCUCACGCUCCACUCUGCAGCUUGGACACCCAGUAGЖCCCUGAAUUUCACUCUCUCUAAAAGGUUCUGAGGGCUCAUCCUGGGCCAGGGGCCCUCCUGUGCACUGUUAGCUAUGGCCACGGGAGCCUCCAGAGCUGCCUGGUAGCUUCAGGUUGACCUGCUUAUCAGGCCUACGAUCCUUCUGAUUUAAGUACAGCUGGAAAGUAUUAUCUAAUUAAGUUCAUGAUAGUGCUUUUGGAGAACUUGUCAAAUUACAGCCAAUGAGAAAAUAAGGACCUAGCAUACUGUGGAGAACCAUUAAAAAUUUGAGAAGAAACAACAAGUAUUAUGUCAACUUACUUCAAAGGCGUAGUUUUGGGAAUUUGAUGCAGUAAAGAUUACCCUGUUUUAUGAUUGUUCCUUGAAAGUCAAAUGGGGGACCUGUCCAUUGUGCUCUAUUAAUCUUGUCAGAAAACUGUCACCAAAACAAAЖCUUGAGUUUGUCCUUGUUCUAGGAGUUACUGGGUAGUUGUAAGUAUUAUUUUUAUUAAAUAUAAUGUAAAAUAAAAUGUUAAGAUACUUAGUUUUGUUUUUCAAAGUAAAGCUGUAGUCAGCCUUAUGUAUGCCAUUGACUCUGAAAUGUAUACCAGCCUUUCACUGUGUACCGUGUGUAUAUAAAUCCACAGAACCGGAUGAGCUGCUUAGGGAGGGAAUAUAUUCAAAGUGUACCAAGGACCAAAUCCUGGAGUUCUCCCAACUPUAGAGGAUGGAAAGGGGCAGAGUAAUCUAGCAAAGGAGACUGAGGCCAGUGAAGUAGGAAGAAAGUAUUUCAAGGAGAGUGAUGAUUCUGUGAAUAUUGCUGAGAAUUCAAAUAAAAAGAGGACUGAGAACUGA
Sequence (SHORT NAMES ENCODING) AGUGGCGGGAGGCUGUGAGCUGAGCGGUGGGGUCUGCGUACGCCUGGAGUCCUUCCCCGCUGUGCUCAGCAUGGACCCUAUCCGGAGCUUCUGCGGGAAGCUGCGGUCUCUGGCCAGCACGCUGGACUGCGAGACGGCCCGGCUGCAGCGAGCGCUGGACGGAGAGGAAAGCGACUUUGAAGAUUAUCCAAUGAGAAUUUUAUAUGACCUUCAUUCAGAAGUUCAGACUCUAAAGGAUGAUGUUAAUAUUCUUCUUGAUAAAGCAAGAUUGGAAAAUCAAGAAGGCAUUGAUUUCAUAAAGGCAACAAAAGUACUAAUGGAAAAAAAUUCAAUGGAUAUUAUGAAAAUAAGAGAGUAUUUCCAGAAGUAUGGAUAUAGUCCACGUGUCAAGAAAAAUUCAGUACACGAGCAAGAAGCCAUUAm6ACUCUGACCCAGAGUUGUCUAAUUGUGAAAAUUUUCAGAAGACUGAUGUGAAAGAUGAUCUGUCUGAUCCUCCUGUUGCAAGCAGUUGUAUUUCUGAGAAGUCUCCACGUAGUCCACAACUUUCAGAUUUUGGm6ACUUGAGCGGUACAUCGUAUCCCAAGUUCUACCAAACCCUCCACAGGCAGUGAACAACUAUAAGGAAGAGCCCGUAAUUGUAACCCCACCUACCAAACAAUCACUAGUAAAAGUACUAAAAm6ACUCCAAAAUGUGCACUAAAAAUGGAUGAUUUUGAGUGUGUAACUCCUAAAUUAGAm6ACACUUUGGUAUCUCUGAAUAUACUAUGUGUUUAAAUGAAGAUUACACAAUGGGm6ACUUAAAAAUGCGAGGAAUAAUAAAAGUGAGGAGGCCAUAGAUACAGAAUCCAGGCUCAAUGAUAAUGUUUUUGCCACUCCCAGCCCCAUCAUCCAGCAGUUGGAAAAAAGUGAUGCCGAAUAUACCAACUCUCCUUUGGUACCUACAUUCUGUACUCCUGGUUUGAAAAUUCCAUCUACAAAGAACAGCAUAGCUUUGGUAUCCACAAAUUACCCAUUAUCAAAAACAAAUAGUUCAUCAAAUGAUUUGGAAGUUGAAGAUCGUACUUCGUUGGUUUUAAAUUCAGACACAUGCUUUGAGAAUUUAACAGAUCCCUCUUCACCUACGAUUUCUUCUUAUGAGAAUCUGCUCAGAACACCUACACCUCCGGAAGUAACUAAAAUUCCAGAAGAUAUUCUCCAGAAAUUCCAGUGGAUCUAUCCAACACAGAAACUGAACAAAAUGAGAUGAAAGCCGAGCUGGACCGAUUUUAACAUUCACAUUGCCCUGCCUCUGUCCCCCUYUAAACGUUGACCCAUUUUAAAGACAAACAUGAm6ACAUUAm6ACAUCAUAAUAUGCUUUUUAUGAAGUUUCAAUAAGGUUUAACCUUAGUCUUGUUGACAUGUAGCCCAGUCAUUCACUCUYUAAGGAUUAUUAGUGUUUCAUUGAUACUAAAUUACCCAGCUUAAUCAACAGAAUGGUUUAAGUAGUACCAGGAAGUAGGACAAGUAAUUUCAAAAAUAUAAAGGUGUUUGCUACUCAGAUGAGGCCGCCCCUGACCUUCUGGCCAGAGAGm6ACAUUGCUGCCAGCCAGCUCUGCCUUCCCAUCAUCUCCUUUCAGGACCGUCCCACACCUUUUACUUGCUCAGUGCUGUCUGAAGAUGCAGUUGCUGUUUGCAAm6ACAACAGGAACACCAGUUAAACUAAUUAGGAAAAGAGGGAGAUUUCCAGGCCUGGGUAACUAUAUACUGUGACCAUUGGAGGUAGAGACAGGUCUCAACAGUUGGAACCAGGAACUCUGCUGUCAGGUUGAGAGUUUUGUUUCUCUUCCAGCUUUUCACUGUGUGGGGGUCUUUUCUCUUAUGUCAGCUCUUUCUAUCACAUGGCAGCUGACCUCUCACGCUCCACUCUGCAGCUUGGACACCCAGUAGm6ACCCUGAAUUUCACUCUCUCUAAAAGGUUCUGAGGGCUCAUCCUGGGCCAGGGGCCCUCCUGUGCACUGUUAGCUAUGGCCACGGGAGCCUCCAGAGCUGCCUGGUAGCUUCAGGUUGACCUGCUUAUCAGGCCUACGAUCCUUCUGAUUUAAGUACAGCUGGAAAGUAUUAUCUAAUUAAGUUCAUGAUAGUGCUUUUGGAGAACUUGUCAAAUUACAGCCAAUGAGAAAAUAAGGACCUAGCAUACUGUGGAGAACCAUUAAAAAUUUGAGAAGAAACAACAAGUAUUAUGUCAACUUACUUCAAAGGCGUAGUUUUGGGAAUUUGAUGCAGUAAAGAUUACCCUGUUUUAUGAUUGUUCCUUGAAAGUCAAAUGGGGGACCUGUCCAUUGUGCUCUAUUAAUCUUGUCAGAAAACUGUCACCAAAACAAAm6ACUUGAGUUUGUCCUUGUUCUAGGAGUUACUGGGUAGUUGUAAGUAUUAUUUUUAUUAAAUAUAAUGUAAAAUAAAAUGUUAAGAUACUUAGUUUUGUUUUUCAAAGUAAAGCUGUAGUCAGCCUUAUGUAUGCCAUUGACUCUGAAAUGUAUACCAGCCUUUCACUGUGUACCGUGUGUAUAUAAAUCCACAGAACCGGAUGAGCUGCUUAGGGAGGGAAUAUAUUCAAAGUGUACCAAGGACCAAAUCCUGGAGUUCUCCCAACUYUAGAGGAUGGAAAGGGGCAGAGUAAUCUAGCAAAGGAGACUGAGGCCAGUGAAGUAGGAAGAAAGUAUUUCAAGGAGAGUGAUGAUUCUGUGAAUAUUGCUGAGAAUUCAAAUAAAAAGAGGACUGAGAACUGA
Sequence (MODOMICS CODE ENCODING) AGUGGCGGGAGGCUGUGAGCUGAGCGGUGGGGUCUGCGUACGCCUGGAGUCCUUCCCCGCUGUGCUCAGCAUGGACCCUAUCCGGAGCUUCUGCGGGAAGCUGCGGUCUCUGGCCAGCACGCUGGACUGCGAGACGGCCCGGCUGCAGCGAGCGCUGGACGGAGAGGAAAGCGACUUUGAAGAUUAUCCAAUGAGAAUUUUAUAUGACCUUCAUUCAGAAGUUCAGACUCUAAAGGAUGAUGUUAAUAUUCUUCUUGAUAAAGCAAGAUUGGAAAAUCAAGAAGGCAUUGAUUUCAUAAAGGCAACAAAAGUACUAAUGGAAAAAAAUUCAAUGGAUAUUAUGAAAAUAAGAGAGUAUUUCCAGAAGUAUGGAUAUAGUCCACGUGUCAAGAAAAAUUCAGUACACGAGCAAGAAGCCAUUA2000000006ACUCUGACCCAGAGUUGUCUAAUUGUGAAAAUUUUCAGAAGACUGAUGUGAAAGAUGAUCUGUCUGAUCCUCCUGUUGCAAGCAGUUGUAUUUCUGAGAAGUCUCCACGUAGUCCACAACUUUCAGAUUUUGG2000000006ACUUGAGCGGUACAUCGUAUCCCAAGUUCUACCAAACCCUCCACAGGCAGUGAACAACUAUAAGGAAGAGCCCGUAAUUGUAACCCCACCUACCAAACAAUCACUAGUAAAAGUACUAAAA2000000006ACUCCAAAAUGUGCACUAAAAAUGGAUGAUUUUGAGUGUGUAACUCCUAAAUUAGA2000000006ACACUUUGGUAUCUCUGAAUAUACUAUGUGUUUAAAUGAAGAUUACACAAUGGG2000000006ACUUAAAAAUGCGAGGAAUAAUAAAAGUGAGGAGGCCAUAGAUACAGAAUCCAGGCUCAAUGAUAAUGUUUUUGCCACUCCCAGCCCCAUCAUCCAGCAGUUGGAAAAAAGUGAUGCCGAAUAUACCAACUCUCCUUUGGUACCUACAUUCUGUACUCCUGGUUUGAAAAUUCCAUCUACAAAGAACAGCAUAGCUUUGGUAUCCACAAAUUACCCAUUAUCAAAAACAAAUAGUUCAUCAAAUGAUUUGGAAGUUGAAGAUCGUACUUCGUUGGUUUUAAAUUCAGACACAUGCUUUGAGAAUUUAACAGAUCCCUCUUCACCUACGAUUUCUUCUUAUGAGAAUCUGCUCAGAACACCUACACCUCCGGAAGUAACUAAAAUUCCAGAAGAUAUUCUCCAGAAAUUCCAGUGGAUCUAUCCAACACAGAAACUGAACAAAAUGAGAUGAAAGCCGAGCUGGACCGAUUUUAACAUUCACAUUGCCCUGCCUCUGUCCCCCU2000000009UUAAACGUUGACCCAUUUUAAAGACAAACAUGA2000000006ACAUUA2000000006ACAUCAUAAUAUGCUUUUUAUGAAGUUUCAAUAAGGUUUAACCUUAGUCUUGUUGACAUGUAGCCCAGUCAUUCACUCU2000000009UUAAGGAUUAUUAGUGUUUCAUUGAUACUAAAUUACCCAGCUUAAUCAACAGAAUGGUUUAAGUAGUACCAGGAAGUAGGACAAGUAAUUUCAAAAAUAUAAAGGUGUUUGCUACUCAGAUGAGGCCGCCCCUGACCUUCUGGCCAGAGAG2000000006ACAUUGCUGCCAGCCAGCUCUGCCUUCCCAUCAUCUCCUUUCAGGACCGUCCCACACCUUUUACUUGCUCAGUGCUGUCUGAAGAUGCAGUUGCUGUUUGCAA2000000006ACAACAGGAACACCAGUUAAACUAAUUAGGAAAAGAGGGAGAUUUCCAGGCCUGGGUAACUAUAUACUGUGACCAUUGGAGGUAGAGACAGGUCUCAACAGUUGGAACCAGGAACUCUGCUGUCAGGUUGAGAGUUUUGUUUCUCUUCCAGCUUUUCACUGUGUGGGGGUCUUUUCUCUUAUGUCAGCUCUUUCUAUCACAUGGCAGCUGACCUCUCACGCUCCACUCUGCAGCUUGGACACCCAGUAG2000000006ACCCUGAAUUUCACUCUCUCUAAAAGGUUCUGAGGGCUCAUCCUGGGCCAGGGGCCCUCCUGUGCACUGUUAGCUAUGGCCACGGGAGCCUCCAGAGCUGCCUGGUAGCUUCAGGUUGACCUGCUUAUCAGGCCUACGAUCCUUCUGAUUUAAGUACAGCUGGAAAGUAUUAUCUAAUUAAGUUCAUGAUAGUGCUUUUGGAGAACUUGUCAAAUUACAGCCAAUGAGAAAAUAAGGACCUAGCAUACUGUGGAGAACCAUUAAAAAUUUGAGAAGAAACAACAAGUAUUAUGUCAACUUACUUCAAAGGCGUAGUUUUGGGAAUUUGAUGCAGUAAAGAUUACCCUGUUUUAUGAUUGUUCCUUGAAAGUCAAAUGGGGGACCUGUCCAUUGUGCUCUAUUAAUCUUGUCAGAAAACUGUCACCAAAACAAA2000000006ACUUGAGUUUGUCCUUGUUCUAGGAGUUACUGGGUAGUUGUAAGUAUUAUUUUUAUUAAAUAUAAUGUAAAAUAAAAUGUUAAGAUACUUAGUUUUGUUUUUCAAAGUAAAGCUGUAGUCAGCCUUAUGUAUGCCAUUGACUCUGAAAUGUAUACCAGCCUUUCACUGUGUACCGUGUGUAUAUAAAUCCACAGAACCGGAUGAGCUGCUUAGGGAGGGAAUAUAUUCAAAGUGUACCAAGGACCAAAUCCUGGAGUUCUCCCAACU2000000009UUAGAGGAUGGAAAGGGGCAGAGUAAUCUAGCAAAGGAGACUGAGGCCAGUGAAGUAGGAAGAAAGUAUUUCAAGGAGAGUGAUGAUUCUGUGAAUAUUGCUGAGAAUUCAAAUAAAAAGAGGACUGAGAACUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 423 556 677 733 787 1290 1323 1329 1408 1559 1662 1911 2344 2611
Modification positions m6A m6A m6A m6A m6A Y m6A m6A Y m6A m6A m6A m6A Y
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM