Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000637180
Gene Name: ENSG00000186184
Sequence (UNICHARACTER ENCODING) AGGCCAGGAGAACAGGUGGCGCAGGGAAGCAGAAACGUAGUUGCGCUGGЖCAGCUGGAGUCGGGCAGGGUCGGGGCCAGCGGCGAGGGGACAAGAAGGGCCGAUUCGAGAGGAAGCGCACCUGAGGGAGCACAGCGAAGGCCGGGACGCAGGGAGCUGGAUGGAGAGCGAGCCUGGGCGGCGAAAGGUUGCCGAGGCGGGGGCUGGGCGCCUGGGAACAAAGGUGAGGGCGGGUUCCGCAGGUGAGGAGGUUUGAGGAGCCACUGGGGAGAAAGGGAAAAGGAAGUCUACAGCCGGAGAGGACGCGCUCUGGGGGUAGAAGGAAUCCUAGGACGGAAAGGAUAAGGUGGGAAACAGUUUUCUCCCAAACUCUCACUCCCCCAAAAGAGЖCAUUUCUUUCUUGCCCUAUUUUGACCCAGUUGAAAAUGCAACUGCAAGCUCCCCGGUGAAACAAAUACCGCCUUCAACCUUCGUAUUCUGUGGUGACUCAUCUCGCACGUGACCCCCCUCCCUCUUCAAGGAAAGCAAUAGAAGAACUGCUUAAGGAGGCAAAACGUGGGAAAACUAGAGCUGAAЖCAAUGGGACCCAUGGGUUGGAUGAAGUGUCCUCUUGCUAGCACCAAUAAAAGAUUUCUAAUUAACACAAUUЖAAAACACAUUGCCCUCUCAUAAAGAGCAAGACCAUGAЖCAAAЖAGAGGGCGAUAAGGAACCAGCGAAGAGCCAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCAUCCUUACAAGCACAGCUUCCGCGCUCGAGGUUCCGCCAGUUACUCCCCGCCACGAAAGCGGAGCAGCCAGGACAAGUACGAAAAGCGGUCCAACCGGCGGUGAGGCUGGAACCAGGGCCAGCCAGCCCUGCGGGCCUCCGUGCUCCUUCGGGGUGCGGUGUGCGGAGAAGGCCUGAGCUGGCAGGGCAAЖCЖCCUGAGAGUGЖCUUUGACAUUAGGUCCUUUGUUGUUUUUAAAGAGGCUGCUGGCCACAGGCAAAAAAAAUGACCUAGCAACUCUUGAGGAAACAAGUGCAAAGGAGGAUGUCUUGGCAAGUUUЖAGCUACUUCUGCAGUGUAGUAGЖCUUACAUAUUGUUGUUUAUCUUGUUUGGAAGUGUGUUUCAAAAUЖAACAUGUCUAGAAUUUAAAGUUUUCAGAGAUUGUUAAAACUGGUUCCAAUUUUUUGGUCAUUUCUCAGAAAAAUAAAAUACUUAUAAAUCCUAUAUUUUACUUUUUGGGGGUAUUACAUUUAAAAUUUAGAAAUCAUCAGUCCAGUGACCAUAUUUAUGAAAAGCUGUAGCCCUCCAAGGUCUGGGAAUUUAUCGAGAAGCUCUUUGAUAGCUCUGCAUUUGUUUUCCCUUAGGUGAACAAUGUAGGAAAUCCUCAAAGUGGCUUUGAAUUUAAUGCUCCACUUCAGUUACCAGAGGUUAAAAAUGGGUUUUGUUGUUUCCUGUGCAUUCUCAAACUCAUUUAUUAGAUAGAACAAUCUUUCUAUAUUUAAUUUUUUUAAUAUAUAGGUCUUAAGUGGUGCUPUAAAAAGAACCCUCACAAGUUAAAAAUUAAGAGUUGUUUCAGUGCUAGAUCUUACCAGCUAAAGACUUGUGAUACCACUAUAUAGUAUAGUUGUUCCAGAAAUCUUCAUUUUAAAUAGAAGUGUUUACAAUGCCUUUUUUCCCCCAGUAUUGGUUUUCAAUACCUGUUUUCAUAUACAAUUACAAACCUUUCAAACCUGUAUUCCUUCUPUAUACUCAGGAAAAUGUCACCAAGCACCCUCCUCCCCAGUUCACAAAAGGAAGAAGAUGAAGAUUCUGUCUCCCUGUUCCCCCUCCCCAGUUUUCCAAAGUGUCUGAGCAUAUGCCUGGCUGUCCUCAGAUCAUCACCAUGCCACAPCCCUGCUCCCUACUUCCUGGCAGCCAAGAAAAGCCCUUUCUACAUGCUAGAAGGAAAUACAPCCAAAAAGUUAGCAUUGGAGUGUUAGAAACUAGAAUAGACCUCUCCGCCACCGAGCUGCUGUGUCACGCCCUCAGCCUGCUAGGGAGUGACAAGCCCAAGUCAUUCUUGAUCCACCCCUUCUCCCACCCCAGAUCCCAGGGACUCAPCCUGUGACUUUGUAACCACACUCAUUCCUUUCAAACACAGAGGAGGAAUUAUUGCUUCAUCUGACUPUAUUCAAAUCUAGUUAUGUAUUGGCCUAAAUUAUUUGUGCAAAAUUUGAAAUGUUUUUUAUUUAAAUAUUAGAAAUAGCACAA
Sequence (SHORT NAMES ENCODING) AGGCCAGGAGAACAGGUGGCGCAGGGAAGCAGAAACGUAGUUGCGCUGGm6ACAGCUGGAGUCGGGCAGGGUCGGGGCCAGCGGCGAGGGGACAAGAAGGGCCGAUUCGAGAGGAAGCGCACCUGAGGGAGCACAGCGAAGGCCGGGACGCAGGGAGCUGGAUGGAGAGCGAGCCUGGGCGGCGAAAGGUUGCCGAGGCGGGGGCUGGGCGCCUGGGAACAAAGGUGAGGGCGGGUUCCGCAGGUGAGGAGGUUUGAGGAGCCACUGGGGAGAAAGGGAAAAGGAAGUCUACAGCCGGAGAGGACGCGCUCUGGGGGUAGAAGGAAUCCUAGGACGGAAAGGAUAAGGUGGGAAACAGUUUUCUCCCAAACUCUCACUCCCCCAAAAGAGm6ACAUUUCUUUCUUGCCCUAUUUUGACCCAGUUGAAAAUGCAACUGCAAGCUCCCCGGUGAAACAAAUACCGCCUUCAACCUUCGUAUUCUGUGGUGACUCAUCUCGCACGUGACCCCCCUCCCUCUUCAAGGAAAGCAAUAGAAGAACUGCUUAAGGAGGCAAAACGUGGGAAAACUAGAGCUGAAm6ACAAUGGGACCCAUGGGUUGGAUGAAGUGUCCUCUUGCUAGCACCAAUAAAAGAUUUCUAAUUAACACAAUUm6AAAAACACAUUGCCCUCUCAUAAAGAGCAAGACCAUGAm6ACAAAm6AAGAGGGCGAUAAGGAACCAGCGAAGAGCCAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCAUCCUUACAAGCACAGCUUCCGCGCUCGAGGUUCCGCCAGUUACUCCCCGCCACGAAAGCGGAGCAGCCAGGACAAGUACGAAAAGCGGUCCAACCGGCGGUGAGGCUGGAACCAGGGCCAGCCAGCCCUGCGGGCCUCCGUGCUCCUUCGGGGUGCGGUGUGCGGAGAAGGCCUGAGCUGGCAGGGCAAm6ACm6ACCUGAGAGUGm6ACUUUGACAUUAGGUCCUUUGUUGUUUUUAAAGAGGCUGCUGGCCACAGGCAAAAAAAAUGACCUAGCAACUCUUGAGGAAACAAGUGCAAAGGAGGAUGUCUUGGCAAGUUUm6AAGCUACUUCUGCAGUGUAGUAGm6ACUUACAUAUUGUUGUUUAUCUUGUUUGGAAGUGUGUUUCAAAAUm6AAACAUGUCUAGAAUUUAAAGUUUUCAGAGAUUGUUAAAACUGGUUCCAAUUUUUUGGUCAUUUCUCAGAAAAAUAAAAUACUUAUAAAUCCUAUAUUUUACUUUUUGGGGGUAUUACAUUUAAAAUUUAGAAAUCAUCAGUCCAGUGACCAUAUUUAUGAAAAGCUGUAGCCCUCCAAGGUCUGGGAAUUUAUCGAGAAGCUCUUUGAUAGCUCUGCAUUUGUUUUCCCUUAGGUGAACAAUGUAGGAAAUCCUCAAAGUGGCUUUGAAUUUAAUGCUCCACUUCAGUUACCAGAGGUUAAAAAUGGGUUUUGUUGUUUCCUGUGCAUUCUCAAACUCAUUUAUUAGAUAGAACAAUCUUUCUAUAUUUAAUUUUUUUAAUAUAUAGGUCUUAAGUGGUGCUYUAAAAAGAACCCUCACAAGUUAAAAAUUAAGAGUUGUUUCAGUGCUAGAUCUUACCAGCUAAAGACUUGUGAUACCACUAUAUAGUAUAGUUGUUCCAGAAAUCUUCAUUUUAAAUAGAAGUGUUUACAAUGCCUUUUUUCCCCCAGUAUUGGUUUUCAAUACCUGUUUUCAUAUACAAUUACAAACCUUUCAAACCUGUAUUCCUUCUYUAUACUCAGGAAAAUGUCACCAAGCACCCUCCUCCCCAGUUCACAAAAGGAAGAAGAUGAAGAUUCUGUCUCCCUGUUCCCCCUCCCCAGUUUUCCAAAGUGUCUGAGCAUAUGCCUGGCUGUCCUCAGAUCAUCACCAUGCCACAYCCCUGCUCCCUACUUCCUGGCAGCCAAGAAAAGCCCUUUCUACAUGCUAGAAGGAAAUACAYCCAAAAAGUUAGCAUUGGAGUGUUAGAAACUAGAAUAGACCUCUCCGCCACCGAGCUGCUGUGUCACGCCCUCAGCCUGCUAGGGAGUGACAAGCCCAAGUCAUUCUUGAUCCACCCCUUCUCCCACCCCAGAUCCCAGGGACUCAYCCUGUGACUUUGUAACCACACUCAUUCCUUUCAAACACAGAGGAGGAAUUAUUGCUUCAUCUGACUYUAUUCAAAUCUAGUUAUGUAUUGGCCUAAAUUAUUUGUGCAAAAUUUGAAAUGUUUUUUAUUUAAAUAUUAGAAAUAGCACAA
Sequence (MODOMICS CODE ENCODING) AGGCCAGGAGAACAGGUGGCGCAGGGAAGCAGAAACGUAGUUGCGCUGG2000000006ACAGCUGGAGUCGGGCAGGGUCGGGGCCAGCGGCGAGGGGACAAGAAGGGCCGAUUCGAGAGGAAGCGCACCUGAGGGAGCACAGCGAAGGCCGGGACGCAGGGAGCUGGAUGGAGAGCGAGCCUGGGCGGCGAAAGGUUGCCGAGGCGGGGGCUGGGCGCCUGGGAACAAAGGUGAGGGCGGGUUCCGCAGGUGAGGAGGUUUGAGGAGCCACUGGGGAGAAAGGGAAAAGGAAGUCUACAGCCGGAGAGGACGCGCUCUGGGGGUAGAAGGAAUCCUAGGACGGAAAGGAUAAGGUGGGAAACAGUUUUCUCCCAAACUCUCACUCCCCCAAAAGAG2000000006ACAUUUCUUUCUUGCCCUAUUUUGACCCAGUUGAAAAUGCAACUGCAAGCUCCCCGGUGAAACAAAUACCGCCUUCAACCUUCGUAUUCUGUGGUGACUCAUCUCGCACGUGACCCCCCUCCCUCUUCAAGGAAAGCAAUAGAAGAACUGCUUAAGGAGGCAAAACGUGGGAAAACUAGAGCUGAA2000000006ACAAUGGGACCCAUGGGUUGGAUGAAGUGUCCUCUUGCUAGCACCAAUAAAAGAUUUCUAAUUAACACAAUU2000000006AAAAACACAUUGCCCUCUCAUAAAGAGCAAGACCAUGA2000000006ACAAA2000000006AAGAGGGCGAUAAGGAACCAGCGAAGAGCCAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCAUCCUUACAAGCACAGCUUCCGCGCUCGAGGUUCCGCCAGUUACUCCCCGCCACGAAAGCGGAGCAGCCAGGACAAGUACGAAAAGCGGUCCAACCGGCGGUGAGGCUGGAACCAGGGCCAGCCAGCCCUGCGGGCCUCCGUGCUCCUUCGGGGUGCGGUGUGCGGAGAAGGCCUGAGCUGGCAGGGCAA2000000006AC2000000006ACCUGAGAGUG2000000006ACUUUGACAUUAGGUCCUUUGUUGUUUUUAAAGAGGCUGCUGGCCACAGGCAAAAAAAAUGACCUAGCAACUCUUGAGGAAACAAGUGCAAAGGAGGAUGUCUUGGCAAGUUU2000000006AAGCUACUUCUGCAGUGUAGUAG2000000006ACUUACAUAUUGUUGUUUAUCUUGUUUGGAAGUGUGUUUCAAAAU2000000006AAACAUGUCUAGAAUUUAAAGUUUUCAGAGAUUGUUAAAACUGGUUCCAAUUUUUUGGUCAUUUCUCAGAAAAAUAAAAUACUUAUAAAUCCUAUAUUUUACUUUUUGGGGGUAUUACAUUUAAAAUUUAGAAAUCAUCAGUCCAGUGACCAUAUUUAUGAAAAGCUGUAGCCCUCCAAGGUCUGGGAAUUUAUCGAGAAGCUCUUUGAUAGCUCUGCAUUUGUUUUCCCUUAGGUGAACAAUGUAGGAAAUCCUCAAAGUGGCUUUGAAUUUAAUGCUCCACUUCAGUUACCAGAGGUUAAAAAUGGGUUUUGUUGUUUCCUGUGCAUUCUCAAACUCAUUUAUUAGAUAGAACAAUCUUUCUAUAUUUAAUUUUUUUAAUAUAUAGGUCUUAAGUGGUGCU2000000009UUAAAAAGAACCCUCACAAGUUAAAAAUUAAGAGUUGUUUCAGUGCUAGAUCUUACCAGCUAAAGACUUGUGAUACCACUAUAUAGUAUAGUUGUUCCAGAAAUCUUCAUUUUAAAUAGAAGUGUUUACAAUGCCUUUUUUCCCCCAGUAUUGGUUUUCAAUACCUGUUUUCAUAUACAAUUACAAACCUUUCAAACCUGUAUUCCUUCU2000000009UUAUACUCAGGAAAAUGUCACCAAGCACCCUCCUCCCCAGUUCACAAAAGGAAGAAGAUGAAGAUUCUGUCUCCCUGUUCCCCCUCCCCAGUUUUCCAAAGUGUCUGAGCAUAUGCCUGGCUGUCCUCAGAUCAUCACCAUGCCACA2000000009UCCCUGCUCCCUACUUCCUGGCAGCCAAGAAAAGCCCUUUCUACAUGCUAGAAGGAAAUACA2000000009UCCAAAAAGUUAGCAUUGGAGUGUUAGAAACUAGAAUAGACCUCUCCGCCACCGAGCUGCUGUGUCACGCCCUCAGCCUGCUAGGGAGUGACAAGCCCAAGUCAUUCUUGAUCCACCCCUUCUCCCACCCCAGAUCCCAGGGACUCA2000000009UCCUGUGACUUUGUAACCACACUCAUUCCUUUCAAACACAGAGGAGGAAUUAUUGCUUCAUCUGACU2000000009UUAUUCAAAUCUAGUUAUGUAUUGGCCUAAAUUAUUUGUGCAAAAUUUGAAAUGUUUUUUAUUUAAAUAUUAGAAAUAGCACAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 50 389 575 647 685 690 949 951 962 1075 1098 1143 1546 1756 1903 1965 2112 2179
Modification positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A Y Y Y Y Y Y
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM