Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000494812
Gene ID: ENSG00000198176
Gene Name: TFDP1
Sequence (UNICHARACTER ENCODING) AGCUUUUGUUGAAGGAGCUUUUUUUCUGUUCUGGUGAAUUCUUUCCUUGGGGGCCGUAGGGUCCCAGCCACUGACAGCAGGAUGGCUUUAAGAAAUGGCUCAGGGAACUGUUGGAGGCGUGUUCAUCACGACGGCAGGUUCCACGUCUAACGGCACAAGGUUCUCUGCCAGUGACCUGACCAACGGUGCAGAUGGGAUGCUGGCCACAЖGCUCCAAUGGGUCUCAGUACAGCGGCUCCAGGGUGGAGACUCCGGUGUCCUACGUCGGGGAGGACGACGAGGAGGACGAUGACUUCAACGAGAAUGACGAGGACGACUGACGUCCUCCCCACUUCAGAUUCGGCUUCAGGAAAACGUUUAGCGAAAAGAAЖCUUUUUUUUUAAUGUGGGUUUUCUGUUUCCUUUUGGCCUACUCCCAAGAAGAUAUUGGUAAGCUAUUGAAUUUAGAUAUGCACCUCUGAUAAGCAAGGAUUGUUUCCCGUAGGAUUAGGACGUGCUGUGGAUGUGUGUUUUGAUACCAGUGUGCUGAUGCAGAGCGUUUAUUUACUUGUUAGGAUUUUGUGUUUUCAUUUGCUAUUUUUCUPUAAGUGCAGAGUUCAUUUUUGCCCCUGAAAAGUUUUUGCUGAGUUUGCUGAAGAAAUUGUAUUUCAACCACAPCCAUGAAAAUAAAACACCPCCUGUUGUGGAUGGUGAGCCCCUGAUGCCGCUUAUUUGCCGUGAGUUUGGACGGCACCCCUG
Sequence (SHORT NAMES ENCODING) AGCUUUUGUUGAAGGAGCUUUUUUUCUGUUCUGGUGAAUUCUUUCCUUGGGGGCCGUAGGGUCCCAGCCACUGACAGCAGGAUGGCUUUAAGAAAUGGCUCAGGGAACUGUUGGAGGCGUGUUCAUCACGACGGCAGGUUCCACGUCUAACGGCACAAGGUUCUCUGCCAGUGACCUGACCAACGGUGCAGAUGGGAUGCUGGCCACAm6AGCUCCAAUGGGUCUCAGUACAGCGGCUCCAGGGUGGAGACUCCGGUGUCCUACGUCGGGGAGGACGACGAGGAGGACGAUGACUUCAACGAGAAUGACGAGGACGACUGACGUCCUCCCCACUUCAGAUUCGGCUUCAGGAAAACGUUUAGCGAAAAGAAm6ACUUUUUUUUUAAUGUGGGUUUUCUGUUUCCUUUUGGCCUACUCCCAAGAAGAUAUUGGUAAGCUAUUGAAUUUAGAUAUGCACCUCUGAUAAGCAAGGAUUGUUUCCCGUAGGAUUAGGACGUGCUGUGGAUGUGUGUUUUGAUACCAGUGUGCUGAUGCAGAGCGUUUAUUUACUUGUUAGGAUUUUGUGUUUUCAUUUGCUAUUUUUCUYUAAGUGCAGAGUUCAUUUUUGCCCCUGAAAAGUUUUUGCUGAGUUUGCUGAAGAAAUUGUAUUUCAACCACAYCCAUGAAAAUAAAACACCYCCUGUUGUGGAUGGUGAGCCCCUGAUGCCGCUUAUUUGCCGUGAGUUUGGACGGCACCCCUG
Sequence (MODOMICS CODE ENCODING) AGCUUUUGUUGAAGGAGCUUUUUUUCUGUUCUGGUGAAUUCUUUCCUUGGGGGCCGUAGGGUCCCAGCCACUGACAGCAGGAUGGCUUUAAGAAAUGGCUCAGGGAACUGUUGGAGGCGUGUUCAUCACGACGGCAGGUUCCACGUCUAACGGCACAAGGUUCUCUGCCAGUGACCUGACCAACGGUGCAGAUGGGAUGCUGGCCACA2000000006AGCUCCAAUGGGUCUCAGUACAGCGGCUCCAGGGUGGAGACUCCGGUGUCCUACGUCGGGGAGGACGACGAGGAGGACGAUGACUUCAACGAGAAUGACGAGGACGACUGACGUCCUCCCCACUUCAGAUUCGGCUUCAGGAAAACGUUUAGCGAAAAGAA2000000006ACUUUUUUUUUAAUGUGGGUUUUCUGUUUCCUUUUGGCCUACUCCCAAGAAGAUAUUGGUAAGCUAUUGAAUUUAGAUAUGCACCUCUGAUAAGCAAGGAUUGUUUCCCGUAGGAUUAGGACGUGCUGUGGAUGUGUGUUUUGAUACCAGUGUGCUGAUGCAGAGCGUUUAUUUACUUGUUAGGAUUUUGUGUUUUCAUUUGCUAUUUUUCU2000000009UUAAGUGCAGAGUUCAUUUUUGCCCCUGAAAAGUUUUUGCUGAGUUUGCUGAAGAAAUUGUAUUUCAACCACA2000000009UCCAUGAAAAUAAAACACC2000000009UCCUGUUGUGGAUGGUGAGCCCCUGAUGCCGCUUAUUUGCCGUGAGUUUGGACGGCACCCCUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 209 370 582 655 674
Modification Positions m6A m6A Y Y Y
Genomic Coordinates 13:113640157:+ 13:113640318:+ 13:113640530:+ 13:113640603:+ 13:113640622:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 834aFpha8RvT
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BtsJQJ3DteUq
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dknfVe6BK8aP
f6YSioLdAWpr
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XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
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Yfn77uLS5tv8