General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000612598
Gene ID:	ENSG00000274605
Gene Name:	PCCA-DT
Sequence (UNICHARACTER ENCODING)	AGAUCCGCCGGAUCCGGGAUCCGGGAGUCGCGCUAGGACCUGGAGGGCUAGUCGGCGGGCUGCGCGUCCGGCCGCUAGCUGAGCUGGAGGCCACCGGCCAGAGCCGACCCCAGGAGUGAGAGAGACAGGGGCGUGCGUGAGUUCCGGCGGCCUGCACCGGGCAAACCCCGUACCUUCCCAGCAUCGGCUCAGCAACCCACGUGCAPCCAGGCCGGUCAAUGUCAUUGAGUCACCUCCGCGCCUUGGCCACCCUGGAGUCCCGAGAAUCCGAAGUUCCAGACAAAUGCCCAAЖCUACAUUCCUGCAUGUUCGAAAGCGUAAAUUGCAAAGCACAAAUCCAGUUGUAGAUUGUGGCCGGGAGCAGUGGCUCACGCCUAUAAUCCCAGCACUUUGGGAGGCCGAGGCGGACAGAUCACGAGGUCAGCACUUCGAGACCAGCAUGGCCAACAUGGUGAAGCCCCAUCUCUACUAAAAAUACAAACAUUAGCCAGGCAUGGUGGUAGGCCCCUGUAAUCCCAGCUACUCGGUAGGCUGAGGCAGGAGAAUCACUUGAACCCGGGAGGCAGAGGUUUCAGUGAGCUGAGЖCUGCACCAUUGCACUCCAGCCUGGGCGACAGACCAAGACUCCAUCUCAAAAAAAAAAAAAAAAAAGUUAUAGAUUGUAAGGAAAAUACCCCCAAGGAAGUUGAGGACACAGCAGACUUGGЖCUGUCUCCAAACCUGUUCAUUCUUCUGAGUGCACUGCUCGGAGCAPCCUAUUGGGCAGCAUAUCCUGGCCUCCUUUCCAGUUCGAUGUGGUACUAUACCUGAUUUCUGGCCAAUAAAAUAUGAGAGGЖCAUGAAAUUCAACAGCCCCUGGGCUUGGCUUAUAAAACCUUCCAUGCAAUCCUCCACACCUUUUCACCUCUCAGCUGCUGAGЖCUUUUCUAGGCACUACACAGAAGCAGCCUGGGUCUCCAGUAGCAAAGGAGAGCAGAUCCUUCUCACUAUCCUGCACCGAЖCUGUGACAUGAGCAAAAAAUAAAGUUUUUAUUUUCUUACACCAUUGA
Sequence (SHORT NAMES ENCODING)	AGAUCCGCCGGAUCCGGGAUCCGGGAGUCGCGCUAGGACCUGGAGGGCUAGUCGGCGGGCUGCGCGUCCGGCCGCUAGCUGAGCUGGAGGCCACCGGCCAGAGCCGACCCCAGGAGUGAGAGAGACAGGGGCGUGCGUGAGUUCCGGCGGCCUGCACCGGGCAAACCCCGUACCUUCCCAGCAUCGGCUCAGCAACCCACGUGCAYCCAGGCCGGUCAAUGUCAUUGAGUCACCUCCGCGCCUUGGCCACCCUGGAGUCCCGAGAAUCCGAAGUUCCAGACAAAUGCCCAAm6ACUACAUUCCUGCAUGUUCGAAAGCGUAAAUUGCAAAGCACAAAUCCAGUUGUAGAUUGUGGCCGGGAGCAGUGGCUCACGCCUAUAAUCCCAGCACUUUGGGAGGCCGAGGCGGACAGAUCACGAGGUCAGCACUUCGAGACCAGCAUGGCCAACAUGGUGAAGCCCCAUCUCUACUAAAAAUACAAACAUUAGCCAGGCAUGGUGGUAGGCCCCUGUAAUCCCAGCUACUCGGUAGGCUGAGGCAGGAGAAUCACUUGAACCCGGGAGGCAGAGGUUUCAGUGAGCUGAGm6ACUGCACCAUUGCACUCCAGCCUGGGCGACAGACCAAGACUCCAUCUCAAAAAAAAAAAAAAAAAAGUUAUAGAUUGUAAGGAAAAUACCCCCAAGGAAGUUGAGGACACAGCAGACUUGGm6ACUGUCUCCAAACCUGUUCAUUCUUCUGAGUGCACUGCUCGGAGCAYCCUAUUGGGCAGCAUAUCCUGGCCUCCUUUCCAGUUCGAUGUGGUACUAUACCUGAUUUCUGGCCAAUAAAAUAUGAGAGGm6ACAUGAAAUUCAACAGCCCCUGGGCUUGGCUUAUAAAACCUUCCAUGCAAUCCUCCACACCUUUUCACCUCUCAGCUGCUGAGm6ACUUUUCUAGGCACUACACAGAAGCAGCCUGGGUCUCCAGUAGCAAAGGAGAGCAGAUCCUUCUCACUAUCCUGCACCGAm6ACUGUGACAUGAGCAAAAAAUAAAGUUUUUAUUUUCUUACACCAUUGA
Sequence (MODOMICS CODE ENCODING)	AGAUCCGCCGGAUCCGGGAUCCGGGAGUCGCGCUAGGACCUGGAGGGCUAGUCGGCGGGCUGCGCGUCCGGCCGCUAGCUGAGCUGGAGGCCACCGGCCAGAGCCGACCCCAGGAGUGAGAGAGACAGGGGCGUGCGUGAGUUCCGGCGGCCUGCACCGGGCAAACCCCGUACCUUCCCAGCAUCGGCUCAGCAACCCACGUGCA2000000009UCCAGGCCGGUCAAUGUCAUUGAGUCACCUCCGCGCCUUGGCCACCCUGGAGUCCCGAGAAUCCGAAGUUCCAGACAAAUGCCCAA2000000006ACUACAUUCCUGCAUGUUCGAAAGCGUAAAUUGCAAAGCACAAAUCCAGUUGUAGAUUGUGGCCGGGAGCAGUGGCUCACGCCUAUAAUCCCAGCACUUUGGGAGGCCGAGGCGGACAGAUCACGAGGUCAGCACUUCGAGACCAGCAUGGCCAACAUGGUGAAGCCCCAUCUCUACUAAAAAUACAAACAUUAGCCAGGCAUGGUGGUAGGCCCCUGUAAUCCCAGCUACUCGGUAGGCUGAGGCAGGAGAAUCACUUGAACCCGGGAGGCAGAGGUUUCAGUGAGCUGAG2000000006ACUGCACCAUUGCACUCCAGCCUGGGCGACAGACCAAGACUCCAUCUCAAAAAAAAAAAAAAAAAAGUUAUAGAUUGUAAGGAAAAUACCCCCAAGGAAGUUGAGGACACAGCAGACUUGG2000000006ACUGUCUCCAAACCUGUUCAUUCUUCUGAGUGCACUGCUCGGAGCA2000000009UCCUAUUGGGCAGCAUAUCCUGGCCUCCUUUCCAGUUCGAUGUGGUACUAUACCUGAUUUCUGGCCAAUAAAAUAUGAGAGG2000000006ACAUGAAAUUCAACAGCCCCUGGGCUUGGCUUAUAAAACCUUCCAUGCAAUCCUCCACACCUUUUCACCUCUCAGCUGCUGAG2000000006ACUUUUCUAGGCACUACACAGAAGCAGCCUGGGUCUCCAGUAGCAAAGGAGAGCAGAUCCUUCUCACUAUCCUGCACCGA2000000006ACUGUGACAUGAGCAAAAAAUAAAGUUUUUAUUUUCUUACACCAUUGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	206	292	584	705	751	833	916	996
Modification Positions	Y	m6A	m6A	m6A	Y	m6A	m6A	m6A
Genomic Coordinates	13:100088767:-	13:100088681:-	13:100086484:-	13:100086363:-	13:100086317:-	13:100086235:-	13:100086152:-	13:100086072:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	3TeAZFYFxgvp aivdrAsbdKEU gZuvgwMuBfgh msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB WdHxkJGRmFxn BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda	aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	gZuvgwMuBfgh nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn