Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000489973
Gene ID: ENSG00000088448
Gene Name: ANKRD10
Sequence (UNICHARACTER ENCODING) AGAGCGGGAGCCACACUCAACGUCUCCACCACACGGUACGCGCAGACGCCAGCCCACAUUGCAGCCUUUGGGGGACAPCCUCAGUGCCUGGUCUGGCUGAUUCAAGCAGGAGCCAACAUUAACAAACCGGAUUGUGAGGGUGAAACUCCCAUUCACAAGGCAGCUCGCUCUGGGAGCCUAGAAUGCAUCAGUGCCCUUGUGGCGAAUGGGGCUCACGUCGAUAACCCCAAGAAAGGCAUCAGGGUUCUGGAGUGGUUGUUUGAGUGACACAGCACAAGGCCUUGAUUUCAUCAUGCUUUUGCUGUGGAUGUAGUGUAGCUUGCUGAACAGGUUUAUUUCACAGAGCAGUGUACAUUCUUGUCUUCCAGGGGAACUUCAACAUGGAGUUACUUUUGAUCCCUCAGUUUUAAUUCAGUGUCUAAAGCCUGAGAAAUGCCAGUGGCCUGACAGCAGCAGACAUUGCACAAACCCAGGGUUUCCAAGAGUGUGCCCAGUUUCUCUUGAACCUCCAGAAUUGUCAUCUGAACCAUUUCUAUAACAAUGGCAUCUUAAAUGGGGGUCAUCAGAAUGUAUUUCCUAAUCAUAUUAGUGUGGGAACAAAUCGAAAGAGAUGCUUGGAAGACUCAGAAGACUUUGGAGUAAAGAAAGCUAGAЖCUGAAGCUCAAAGCUUGGAUUCUGCCGUGCCACUCACGAAUGGCGACACAGAAGACGAUGCUGACAAAAUGCACGUUGAUAGGGAGUUUGC
Sequence (SHORT NAMES ENCODING) AGAGCGGGAGCCACACUCAACGUCUCCACCACACGGUACGCGCAGACGCCAGCCCACAUUGCAGCCUUUGGGGGACAYCCUCAGUGCCUGGUCUGGCUGAUUCAAGCAGGAGCCAACAUUAACAAACCGGAUUGUGAGGGUGAAACUCCCAUUCACAAGGCAGCUCGCUCUGGGAGCCUAGAAUGCAUCAGUGCCCUUGUGGCGAAUGGGGCUCACGUCGAUAACCCCAAGAAAGGCAUCAGGGUUCUGGAGUGGUUGUUUGAGUGACACAGCACAAGGCCUUGAUUUCAUCAUGCUUUUGCUGUGGAUGUAGUGUAGCUUGCUGAACAGGUUUAUUUCACAGAGCAGUGUACAUUCUUGUCUUCCAGGGGAACUUCAACAUGGAGUUACUUUUGAUCCCUCAGUUUUAAUUCAGUGUCUAAAGCCUGAGAAAUGCCAGUGGCCUGACAGCAGCAGACAUUGCACAAACCCAGGGUUUCCAAGAGUGUGCCCAGUUUCUCUUGAACCUCCAGAAUUGUCAUCUGAACCAUUUCUAUAACAAUGGCAUCUUAAAUGGGGGUCAUCAGAAUGUAUUUCCUAAUCAUAUUAGUGUGGGAACAAAUCGAAAGAGAUGCUUGGAAGACUCAGAAGACUUUGGAGUAAAGAAAGCUAGAm6ACUGAAGCUCAAAGCUUGGAUUCUGCCGUGCCACUCACGAAUGGCGACACAGAAGACGAUGCUGACAAAAUGCACGUUGAUAGGGAGUUUGC
Sequence (MODOMICS CODE ENCODING) AGAGCGGGAGCCACACUCAACGUCUCCACCACACGGUACGCGCAGACGCCAGCCCACAUUGCAGCCUUUGGGGGACA2000000009UCCUCAGUGCCUGGUCUGGCUGAUUCAAGCAGGAGCCAACAUUAACAAACCGGAUUGUGAGGGUGAAACUCCCAUUCACAAGGCAGCUCGCUCUGGGAGCCUAGAAUGCAUCAGUGCCCUUGUGGCGAAUGGGGCUCACGUCGAUAACCCCAAGAAAGGCAUCAGGGUUCUGGAGUGGUUGUUUGAGUGACACAGCACAAGGCCUUGAUUUCAUCAUGCUUUUGCUGUGGAUGUAGUGUAGCUUGCUGAACAGGUUUAUUUCACAGAGCAGUGUACAUUCUUGUCUUCCAGGGGAACUUCAACAUGGAGUUACUUUUGAUCCCUCAGUUUUAAUUCAGUGUCUAAAGCCUGAGAAAUGCCAGUGGCCUGACAGCAGCAGACAUUGCACAAACCCAGGGUUUCCAAGAGUGUGCCCAGUUUCUCUUGAACCUCCAGAAUUGUCAUCUGAACCAUUUCUAUAACAAUGGCAUCUUAAAUGGGGGUCAUCAGAAUGUAUUUCCUAAUCAUAUUAGUGUGGGAACAAAUCGAAAGAGAUGCUUGGAAGACUCAGAAGACUUUGGAGUAAAGAAAGCUAGA2000000006ACUGAAGCUCAAAGCUUGGAUUCUGCCGUGCCACUCACGAAUGGCGACACAGAAGACGAUGCUGACAAAAUGCACGUUGAUAGGGAGUUUGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 78 654
Modification Positions Y m6A
Genomic Coordinates 13:110910669:- 13:110893034:-
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8