Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000622406
Gene Name: ENSG00000126226
Sequence (UNICHARACTER ENCODING) AGACGGACCGAGGGCCGGAAGUGACGCCAGCUGGCCCGCUUGAGGCGUAGGGGGUGGCGCUCUCCGUUCGGCGGCGCUCCCAUGGCGCACAUUACCAUUAACCAGUACCUGCAGCAGGUGUACGAAGCCAUCGACAGCAGAGAUGGAGCAUCUUGUGCAGAGUUGGUGUCUUUUAAЖCAPCCUCAUGUUGCAAACCCACGACUUCAAAUGGCCUCUCCAGAGGAGAAGUGUCAACAAGUCUUGGAACCCCCUUAUGAUGAAAUGUUUGCAGCUCAUUUAAGGUGCACUUAUGCAGUGGGGAAUCAUGACUUCAUAGAGGCAUACAAGUGCCAGACCGUGAUAGUCCAAUAUCCUUUGUCGUUCAUGGCAGCUGUCCCGCAUAGAACACAUGCAGUGGAUUACUUGGGACUUGAGACCCGGAAACACUGGGCCAGUUGCUCAUUUCUGCAGUUAGAAAGGAAUGACAGUGUUUUGGAACAGAAGCUCGUUUCAGCUCUUUCACUUGGUACAUCAUUCUUGCGAGCAUUCCAGGCCCACAAAGAAGAAAACUGGGCUCUGCCUGUCAUGUAUGCAGUAGCGCUUGACCUUCGAGUGUUUGCCAAUAAUGCAGAUCAACAGUUGGUAAAGAAAGGAAAAAGCAAAGUUGGGGACAUGUUGGAAAAAGCAGCAGAGUUACUGAUGAGCUGUUUCCGGGUCUGUGCCAGCGACACCCGUGCUGGUAUAGAGGACUCUAAGAAGUGGGGCAUGCUGUUUCUGGUGAACCAGCUGUUUAAAAUCUACUUCAAGAUCAACAAACUCCAUUUAUGUAAACCCCUAAUUAGAGCAAUUGACAGCUCAAACCUGAAAGACGAUUACAGCACUGCACAGAGAGUAACAUACAAAUACUACGUUGGACGCAAGGCUAUGUUUGACAGCGAUUUUAAGCAAGCUGAGGAGUACCUGUCAUUUGCCUUUGAGCAUUGUCACCGUUCUAGUCAGAAGAACAAAAGGAUGAUUCUGAUCUAUUUGCUUCCAGUAAAAAUGCUAUUGGGUCACAUGCCCACUGUGGAGCUCCUGAAAAAGUAUCACCUGAUGCAGUUUGCGGAAGUAACCAGAGCUGUGAGCGAGGGCAACCUGCUGCUGCUGCACGAGGCGCUGGCGAAGCACGAGGCCUUCUUCAUUCGCUGCGGAAUCUUCCUCAPCCUGGAGAAGCUGAAGAUCAUCACCUACAGGAACCUCUPUAAGAAAGUGUAUUUGUUACUGAAAACACACCAGCUGUCUCUGGAUGCUUUUCUGGUUGCCUUGAAGUUCAUGCAGGUGGAGGACGUGGACAUUGACGAAGUUCAGUGUAUUCUGGCUAЖCUUGAUAUACAUGGGACACGUCAAAGGCUACAUAUCGCAUCAGCAUCAGAAGCUGGUGGUCAGCAAGCAGAACCCAUUUCCUCCCCUGUCCACGGUGUGUUGAAAGUACACGGAGCCCCGAGGACGGCCUGAUGAAAACCUGGAAUUCCUUUUUCACAGЖCUCGGCUGGUUCUGGAGUCUUUGUGAGЖCUUCUUUGAAGGAGGCUUUGCGUGAAGGCUGCUCGGCUCACUUUUCCUAAGUGUGGUUCCUGAAGGCUGUCUUUGUAЖCUUUUUGUAGUUCUUUGUGUAAAAAGCGUAUUCUGAAUUUAUACACAUGGCAUGUUCUUCAUUAUAUCUUCCAGGAUACAUCUAUUUUUAUAUAUUAAAUUUGAAUGUGUUAUCAAAAUGCUUGGUUAЖCUUAAGGCACCUUUUUAAAAGCAGAAUUUAAUUUGAUUUAAAUUUUCCAGAUUUUAUAGCUUGCCUGUAUGGAUGCUCCUCAAUUUAUGAUAGGGUUACAPCCCAAUAAЖCUUAUUUUAUUUGCCUUUGCUUUGUUGGUUAAAAAAAAAUUUCUUUUAAAAAACCAUCUUAAAUUGAAAAUACAUUUAAUACACCUGCUACU
Sequence (SHORT NAMES ENCODING) AGACGGACCGAGGGCCGGAAGUGACGCCAGCUGGCCCGCUUGAGGCGUAGGGGGUGGCGCUCUCCGUUCGGCGGCGCUCCCAUGGCGCACAUUACCAUUAACCAGUACCUGCAGCAGGUGUACGAAGCCAUCGACAGCAGAGAUGGAGCAUCUUGUGCAGAGUUGGUGUCUUUUAAm6ACAYCCUCAUGUUGCAAACCCACGACUUCAAAUGGCCUCUCCAGAGGAGAAGUGUCAACAAGUCUUGGAACCCCCUUAUGAUGAAAUGUUUGCAGCUCAUUUAAGGUGCACUUAUGCAGUGGGGAAUCAUGACUUCAUAGAGGCAUACAAGUGCCAGACCGUGAUAGUCCAAUAUCCUUUGUCGUUCAUGGCAGCUGUCCCGCAUAGAACACAUGCAGUGGAUUACUUGGGACUUGAGACCCGGAAACACUGGGCCAGUUGCUCAUUUCUGCAGUUAGAAAGGAAUGACAGUGUUUUGGAACAGAAGCUCGUUUCAGCUCUUUCACUUGGUACAUCAUUCUUGCGAGCAUUCCAGGCCCACAAAGAAGAAAACUGGGCUCUGCCUGUCAUGUAUGCAGUAGCGCUUGACCUUCGAGUGUUUGCCAAUAAUGCAGAUCAACAGUUGGUAAAGAAAGGAAAAAGCAAAGUUGGGGACAUGUUGGAAAAAGCAGCAGAGUUACUGAUGAGCUGUUUCCGGGUCUGUGCCAGCGACACCCGUGCUGGUAUAGAGGACUCUAAGAAGUGGGGCAUGCUGUUUCUGGUGAACCAGCUGUUUAAAAUCUACUUCAAGAUCAACAAACUCCAUUUAUGUAAACCCCUAAUUAGAGCAAUUGACAGCUCAAACCUGAAAGACGAUUACAGCACUGCACAGAGAGUAACAUACAAAUACUACGUUGGACGCAAGGCUAUGUUUGACAGCGAUUUUAAGCAAGCUGAGGAGUACCUGUCAUUUGCCUUUGAGCAUUGUCACCGUUCUAGUCAGAAGAACAAAAGGAUGAUUCUGAUCUAUUUGCUUCCAGUAAAAAUGCUAUUGGGUCACAUGCCCACUGUGGAGCUCCUGAAAAAGUAUCACCUGAUGCAGUUUGCGGAAGUAACCAGAGCUGUGAGCGAGGGCAACCUGCUGCUGCUGCACGAGGCGCUGGCGAAGCACGAGGCCUUCUUCAUUCGCUGCGGAAUCUUCCUCAYCCUGGAGAAGCUGAAGAUCAUCACCUACAGGAACCUCUYUAAGAAAGUGUAUUUGUUACUGAAAACACACCAGCUGUCUCUGGAUGCUUUUCUGGUUGCCUUGAAGUUCAUGCAGGUGGAGGACGUGGACAUUGACGAAGUUCAGUGUAUUCUGGCUAm6ACUUGAUAUACAUGGGACACGUCAAAGGCUACAUAUCGCAUCAGCAUCAGAAGCUGGUGGUCAGCAAGCAGAACCCAUUUCCUCCCCUGUCCACGGUGUGUUGAAAGUACACGGAGCCCCGAGGACGGCCUGAUGAAAACCUGGAAUUCCUUUUUCACAGm6ACUCGGCUGGUUCUGGAGUCUUUGUGAGm6ACUUCUUUGAAGGAGGCUUUGCGUGAAGGCUGCUCGGCUCACUUUUCCUAAGUGUGGUUCCUGAAGGCUGUCUUUGUAm6ACUUUUUGUAGUUCUUUGUGUAAAAAGCGUAUUCUGAAUUUAUACACAUGGCAUGUUCUUCAUUAUAUCUUCCAGGAUACAUCUAUUUUUAUAUAUUAAAUUUGAAUGUGUUAUCAAAAUGCUUGGUUAm6ACUUAAGGCACCUUUUUAAAAGCAGAAUUUAAUUUGAUUUAAAUUUUCCAGAUUUUAUAGCUUGCCUGUAUGGAUGCUCCUCAAUUUAUGAUAGGGUUACAYCCCAAUAAm6ACUUAUUUUAUUUGCCUUUGCUUUGUUGGUUAAAAAAAAAUUUCUUUUAAAAAACCAUCUUAAAUUGAAAAUACAUUUAAUACACCUGCUACU
Sequence (MODOMICS CODE ENCODING) AGACGGACCGAGGGCCGGAAGUGACGCCAGCUGGCCCGCUUGAGGCGUAGGGGGUGGCGCUCUCCGUUCGGCGGCGCUCCCAUGGCGCACAUUACCAUUAACCAGUACCUGCAGCAGGUGUACGAAGCCAUCGACAGCAGAGAUGGAGCAUCUUGUGCAGAGUUGGUGUCUUUUAA2000000006ACA2000000009UCCUCAUGUUGCAAACCCACGACUUCAAAUGGCCUCUCCAGAGGAGAAGUGUCAACAAGUCUUGGAACCCCCUUAUGAUGAAAUGUUUGCAGCUCAUUUAAGGUGCACUUAUGCAGUGGGGAAUCAUGACUUCAUAGAGGCAUACAAGUGCCAGACCGUGAUAGUCCAAUAUCCUUUGUCGUUCAUGGCAGCUGUCCCGCAUAGAACACAUGCAGUGGAUUACUUGGGACUUGAGACCCGGAAACACUGGGCCAGUUGCUCAUUUCUGCAGUUAGAAAGGAAUGACAGUGUUUUGGAACAGAAGCUCGUUUCAGCUCUUUCACUUGGUACAUCAUUCUUGCGAGCAUUCCAGGCCCACAAAGAAGAAAACUGGGCUCUGCCUGUCAUGUAUGCAGUAGCGCUUGACCUUCGAGUGUUUGCCAAUAAUGCAGAUCAACAGUUGGUAAAGAAAGGAAAAAGCAAAGUUGGGGACAUGUUGGAAAAAGCAGCAGAGUUACUGAUGAGCUGUUUCCGGGUCUGUGCCAGCGACACCCGUGCUGGUAUAGAGGACUCUAAGAAGUGGGGCAUGCUGUUUCUGGUGAACCAGCUGUUUAAAAUCUACUUCAAGAUCAACAAACUCCAUUUAUGUAAACCCCUAAUUAGAGCAAUUGACAGCUCAAACCUGAAAGACGAUUACAGCACUGCACAGAGAGUAACAUACAAAUACUACGUUGGACGCAAGGCUAUGUUUGACAGCGAUUUUAAGCAAGCUGAGGAGUACCUGUCAUUUGCCUUUGAGCAUUGUCACCGUUCUAGUCAGAAGAACAAAAGGAUGAUUCUGAUCUAUUUGCUUCCAGUAAAAAUGCUAUUGGGUCACAUGCCCACUGUGGAGCUCCUGAAAAAGUAUCACCUGAUGCAGUUUGCGGAAGUAACCAGAGCUGUGAGCGAGGGCAACCUGCUGCUGCUGCACGAGGCGCUGGCGAAGCACGAGGCCUUCUUCAUUCGCUGCGGAAUCUUCCUCA2000000009UCCUGGAGAAGCUGAAGAUCAUCACCUACAGGAACCUCU2000000009UUAAGAAAGUGUAUUUGUUACUGAAAACACACCAGCUGUCUCUGGAUGCUUUUCUGGUUGCCUUGAAGUUCAUGCAGGUGGAGGACGUGGACAUUGACGAAGUUCAGUGUAUUCUGGCUA2000000006ACUUGAUAUACAUGGGACACGUCAAAGGCUACAUAUCGCAUCAGCAUCAGAAGCUGGUGGUCAGCAAGCAGAACCCAUUUCCUCCCCUGUCCACGGUGUGUUGAAAGUACACGGAGCCCCGAGGACGGCCUGAUGAAAACCUGGAAUUCCUUUUUCACAG2000000006ACUCGGCUGGUUCUGGAGUCUUUGUGAG2000000006ACUUCUUUGAAGGAGGCUUUGCGUGAAGGCUGCUCGGCUCACUUUUCCUAAGUGUGGUUCCUGAAGGCUGUCUUUGUA2000000006ACUUUUUGUAGUUCUUUGUGUAAAAAGCGUAUUCUGAAUUUAUACACAUGGCAUGUUCUUCAUUAUAUCUUCCAGGAUACAUCUAUUUUUAUAUAUUAAAUUUGAAUGUGUUAUCAAAAUGCUUGGUUA2000000006ACUUAAGGCACCUUUUUAAAAGCAGAAUUUAAUUUGAUUUAAAUUUUCCAGAUUUUAUAGCUUGCCUGUAUGGAUGCUCCUCAAUUUAUGAUAGGGUUACA2000000009UCCCAAUAA2000000006ACUUAUUUUAUUUGCCUUUGCUUUGUUGGUUAAAAAAAAAUUUCUUUUAAAAAACCAUCUUAAAUUGAAAAUACAUUUAAUACACCUGCUACU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 177 180 1181 1220 1340 1500 1528 1606 1735 1836 1845
Modification positions m6A Y Y Y m6A m6A m6A m6A m6A Y m6A
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM