Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000375370
Gene Name: ENSG00000198176
Sequence (UNICHARACTER ENCODING) ACUCGGCCCAGGGCAGGGACCCCGCCACGGCCGGGACCGCCCGGCCCGGCCCCAGCCCGCGCCUCUCCGCGCCGCCCCGCGCUCCGCACCGCGCCCUCUCCGCGUCCCCGCCCGCGCGGCCGGACCGGGCAGCCAGAAAAAUCAUUUUUCUUCUCUGGGAAGGUGAACAUUUGUAGCAUUGAUUUCCCGGAUCUGGUAЖCAUGGCAAAAGAUGCCGGUCUAAUUGAAGCCAACGGAGAACUCAAGGUCUUCAUAGACCAGAACCUUAGUCCCGGGAAAGGCGUGGUGUCCCUCGUGGCCGUUCACCCCPCCACCGUCAACCCGCUCGGGAAGCAGCUCUUGCCAAAAACCUUUGGACAGUCCAAUGUCAACAUUGCCCAGCAAGUGGUAAUUGGUACGCCUCAGAGACCGGCAGCGUCAAЖCACCCUGGUGGUAGGAAGCCCACACACCCCCAGCACUCACUUUGCCUCUCAGAACCAGCCUUCCGACUCCUCACCUUGGUCUGCCGGGAAGCGCAACAGGAAAGGAGAGAAGAAUGGCAAGGGCCUACGGCAUUUCUCCAUGAAGGUCUGCGAGAAGGUGCAGAGGAAAGGGACCACUUCCUACAACGAAGUGGCAGACGAGCUGGUUGCGGAGUUCAGUGCUGCCGACAACCACAUCUUACCAAACGAGUCAGCUUAUGACCAGAAAAACAUAAGACGGCGCGUCUACGAUGCCUUAAACGUGCUAAUGGCCAUGAACAUCAUCUCCAAGGAGAAGAAGGAGAUCAAGUGGAUUGGUCUGCCCACCAACUCGGCUCAGGAAUGUCAGAACUUAGAGGUGGAAAGACAGAGGAGACUUGAAAGAAUAAAACAGAAЖCAGUCUCAACUUCAAGAACUUAUUCUACЖGCAAAUUGCCUUCAAGAACCUGGUGCAGAGAAACCGGCAUGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACUCAGUCAPCCACCUGCCCUUCAUCAUCGUCAACACCAGCAAGAAGACGGUCAUCGACUGCAGCAUCUCCAAUGACAAAUUUGAGUAUCUGUUUAAUUUUGACAACACAUUUGAAAUCCACGAUGACAUAGAAGUGCUGAAGCGGAUGGGCAUGGCUUGCGGGCUGGAGUCGGGGAGCUGCUCUGCCGAAGACCUUAAAAUGGCCAGAAGUCUGGUCCCCAAGGCUCUGGAGCCAUACGUGACAGAAAUGGCUCAGGGAACUGUUGGAGGCGUGUUCAUCACGACGGCAGGUUCCACGUCUAACGGCACAAGGUUCUCUGCCAGUGACCUGACCAACGGUGCAGAUGGGAUGCUGGCCACAЖGCUCCAAUGGGUCUCAGUACAGCGGCUCCAGGGUGGAGACUCCGGUGUCCUACGUCGGGGAGGACGACGAGGAGGACGAUGACUUCAACGAGAAUGACGAGGACGACUGACGUCCUCCCCACUUCAGAUUCGGCUUCAGGAAAACGUUUAGCGAAAAGAAЖCUUUUUUUUUAAUGUGGGUUUUCUGUUUCCUUUUGGCCUACUCCCAAGAAGAUAUUGGUAAGCUAUUGAAUUUAGAUAUGCACCUCUGAUAAGCAAGGAUUGUUUCCCGUAGGAUUAGGACGUGCUGUGGAUGUGUGUUUUGAUACCAGUGUGCUGAUGCAGAGCGUUUAUUUACUUGUUAGGAUUUUGUGUUUUCAUUUGCUAUUUUUCUPUAAGUGCAGAGUUCAUUUUUGCCCCUGAAAAGUUUUUGCUGAGUUUGCUGAAGAAAUUGUAUUUCAACCACAPCCAUGAAAAUAAAACACCPCCUGUUGUGGAUGGUGAGCCCCUGAUGCCGCUUAUUUGCCGUGAGUUUGGACGGCACCCCUGCUGGCGGAUAGCAAGЖCUCUGUGGAGUUUGUUCAGUGGUACGGUGUCCAAGCAAЖCAGCAGAAUGCAACUUUCUAAЖCAGCCCCAAGCAAЖCAGCAGAAUUCAACUUUUUAAЖCAAUAAACACCAUCAACCUUAUUGЖCUPUAUUGUCCCUUAAAUUAUAUUGЖCUGUUGUGAUUCCAUCAAGUUUGUACACUCUUUUCUCUCCCUGUUUUGCAGCAACAAAUUGCGAAGUGCUUUUGUUUGUUUGUUUUCGUUUGGUUAAAGCUUAUUGCCAUGCUGGUGCGGCUAUGGAGACUGUCUGGAAGGCUUGGAAUGGUUUAUUGCUUAUGGUAAAAUUUGCCUGAUUUCUUACAGGCAGCGUUUGGAAACCUUUUAUUAUAUAGUUGUUUACЖUACUUAUAAGUCUAUCAUUUAAAGЖCAUGUACUGAAACAAAUGUAUUUGUUUCAUAAGCAUCUUCCUGUAAUCUAUUAUAAAAUUGAAAUUAAAUAUAGAGAAUGUUUUAACAAUUUUUUAЖCUCAAAAUUUGUCAAUCAUUUUUAAUAGUUCUUUUUUUAUAAAAAGAAAAAGGAAUUUAAGGACAGGCAGUAGUCUCUUUUAAAAUUUAUUCACAAAACCCAUUAЖCUGCACAGUUGCUAUUAGCUGCCUGUUCUAAAACGAUAGUCUUUUUAUUGAAACACAAAUAAACUUUUCUGUAAUAUUUUAUGGUAUAUAAAGAGACUPUAAUUGUUUGACUUGUUUAЖCUUGGCACUGUUAGUUUUUAUUAAUAAAACGCGCAUGGGCAUUUUAAACAA
Sequence (SHORT NAMES ENCODING) ACUCGGCCCAGGGCAGGGACCCCGCCACGGCCGGGACCGCCCGGCCCGGCCCCAGCCCGCGCCUCUCCGCGCCGCCCCGCGCUCCGCACCGCGCCCUCUCCGCGUCCCCGCCCGCGCGGCCGGACCGGGCAGCCAGAAAAAUCAUUUUUCUUCUCUGGGAAGGUGAACAUUUGUAGCAUUGAUUUCCCGGAUCUGGUAm6ACAUGGCAAAAGAUGCCGGUCUAAUUGAAGCCAACGGAGAACUCAAGGUCUUCAUAGACCAGAACCUUAGUCCCGGGAAAGGCGUGGUGUCCCUCGUGGCCGUUCACCCCYCCACCGUCAACCCGCUCGGGAAGCAGCUCUUGCCAAAAACCUUUGGACAGUCCAAUGUCAACAUUGCCCAGCAAGUGGUAAUUGGUACGCCUCAGAGACCGGCAGCGUCAAm6ACACCCUGGUGGUAGGAAGCCCACACACCCCCAGCACUCACUUUGCCUCUCAGAACCAGCCUUCCGACUCCUCACCUUGGUCUGCCGGGAAGCGCAACAGGAAAGGAGAGAAGAAUGGCAAGGGCCUACGGCAUUUCUCCAUGAAGGUCUGCGAGAAGGUGCAGAGGAAAGGGACCACUUCCUACAACGAAGUGGCAGACGAGCUGGUUGCGGAGUUCAGUGCUGCCGACAACCACAUCUUACCAAACGAGUCAGCUUAUGACCAGAAAAACAUAAGACGGCGCGUCUACGAUGCCUUAAACGUGCUAAUGGCCAUGAACAUCAUCUCCAAGGAGAAGAAGGAGAUCAAGUGGAUUGGUCUGCCCACCAACUCGGCUCAGGAAUGUCAGAACUUAGAGGUGGAAAGACAGAGGAGACUUGAAAGAAUAAAACAGAAm6ACAGUCUCAACUUCAAGAACUUAUUCUACm6AGCAAAUUGCCUUCAAGAACCUGGUGCAGAGAAACCGGCAUGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACUCAGUCAYCCACCUGCCCUUCAUCAUCGUCAACACCAGCAAGAAGACGGUCAUCGACUGCAGCAUCUCCAAUGACAAAUUUGAGUAUCUGUUUAAUUUUGACAACACAUUUGAAAUCCACGAUGACAUAGAAGUGCUGAAGCGGAUGGGCAUGGCUUGCGGGCUGGAGUCGGGGAGCUGCUCUGCCGAAGACCUUAAAAUGGCCAGAAGUCUGGUCCCCAAGGCUCUGGAGCCAUACGUGACAGAAAUGGCUCAGGGAACUGUUGGAGGCGUGUUCAUCACGACGGCAGGUUCCACGUCUAACGGCACAAGGUUCUCUGCCAGUGACCUGACCAACGGUGCAGAUGGGAUGCUGGCCACAm6AGCUCCAAUGGGUCUCAGUACAGCGGCUCCAGGGUGGAGACUCCGGUGUCCUACGUCGGGGAGGACGACGAGGAGGACGAUGACUUCAACGAGAAUGACGAGGACGACUGACGUCCUCCCCACUUCAGAUUCGGCUUCAGGAAAACGUUUAGCGAAAAGAAm6ACUUUUUUUUUAAUGUGGGUUUUCUGUUUCCUUUUGGCCUACUCCCAAGAAGAUAUUGGUAAGCUAUUGAAUUUAGAUAUGCACCUCUGAUAAGCAAGGAUUGUUUCCCGUAGGAUUAGGACGUGCUGUGGAUGUGUGUUUUGAUACCAGUGUGCUGAUGCAGAGCGUUUAUUUACUUGUUAGGAUUUUGUGUUUUCAUUUGCUAUUUUUCUYUAAGUGCAGAGUUCAUUUUUGCCCCUGAAAAGUUUUUGCUGAGUUUGCUGAAGAAAUUGUAUUUCAACCACAYCCAUGAAAAUAAAACACCYCCUGUUGUGGAUGGUGAGCCCCUGAUGCCGCUUAUUUGCCGUGAGUUUGGACGGCACCCCUGCUGGCGGAUAGCAAGm6ACUCUGUGGAGUUUGUUCAGUGGUACGGUGUCCAAGCAAm6ACAGCAGAAUGCAACUUUCUAAm6ACAGCCCCAAGCAAm6ACAGCAGAAUUCAACUUUUUAAm6ACAAUAAACACCAUCAACCUUAUUGm6ACUYUAUUGUCCCUUAAAUUAUAUUGm6ACUGUUGUGAUUCCAUCAAGUUUGUACACUCUUUUCUCUCCCUGUUUUGCAGCAACAAAUUGCGAAGUGCUUUUGUUUGUUUGUUUUCGUUUGGUUAAAGCUUAUUGCCAUGCUGGUGCGGCUAUGGAGACUGUCUGGAAGGCUUGGAAUGGUUUAUUGCUUAUGGUAAAAUUUGCCUGAUUUCUUACAGGCAGCGUUUGGAAACCUUUUAUUAUAUAGUUGUUUACm6AUACUUAUAAGUCUAUCAUUUAAAGm6ACAUGUACUGAAACAAAUGUAUUUGUUUCAUAAGCAUCUUCCUGUAAUCUAUUAUAAAAUUGAAAUUAAAUAUAGAGAAUGUUUUAACAAUUUUUUAm6ACUCAAAAUUUGUCAAUCAUUUUUAAUAGUUCUUUUUUUAUAAAAAGAAAAAGGAAUUUAAGGACAGGCAGUAGUCUCUUUUAAAAUUUAUUCACAAAACCCAUUAm6ACUGCACAGUUGCUAUUAGCUGCCUGUUCUAAAACGAUAGUCUUUUUAUUGAAACACAAAUAAACUUUUCUGUAAUAUUUUAUGGUAUAUAAAGAGACUYUAAUUGUUUGACUUGUUUAm6ACUUGGCACUGUUAGUUUUUAUUAAUAAAACGCGCAUGGGCAUUUUAAACAA
Sequence (MODOMICS CODE ENCODING) ACUCGGCCCAGGGCAGGGACCCCGCCACGGCCGGGACCGCCCGGCCCGGCCCCAGCCCGCGCCUCUCCGCGCCGCCCCGCGCUCCGCACCGCGCCCUCUCCGCGUCCCCGCCCGCGCGGCCGGACCGGGCAGCCAGAAAAAUCAUUUUUCUUCUCUGGGAAGGUGAACAUUUGUAGCAUUGAUUUCCCGGAUCUGGUA2000000006ACAUGGCAAAAGAUGCCGGUCUAAUUGAAGCCAACGGAGAACUCAAGGUCUUCAUAGACCAGAACCUUAGUCCCGGGAAAGGCGUGGUGUCCCUCGUGGCCGUUCACCCC2000000009UCCACCGUCAACCCGCUCGGGAAGCAGCUCUUGCCAAAAACCUUUGGACAGUCCAAUGUCAACAUUGCCCAGCAAGUGGUAAUUGGUACGCCUCAGAGACCGGCAGCGUCAA2000000006ACACCCUGGUGGUAGGAAGCCCACACACCCCCAGCACUCACUUUGCCUCUCAGAACCAGCCUUCCGACUCCUCACCUUGGUCUGCCGGGAAGCGCAACAGGAAAGGAGAGAAGAAUGGCAAGGGCCUACGGCAUUUCUCCAUGAAGGUCUGCGAGAAGGUGCAGAGGAAAGGGACCACUUCCUACAACGAAGUGGCAGACGAGCUGGUUGCGGAGUUCAGUGCUGCCGACAACCACAUCUUACCAAACGAGUCAGCUUAUGACCAGAAAAACAUAAGACGGCGCGUCUACGAUGCCUUAAACGUGCUAAUGGCCAUGAACAUCAUCUCCAAGGAGAAGAAGGAGAUCAAGUGGAUUGGUCUGCCCACCAACUCGGCUCAGGAAUGUCAGAACUUAGAGGUGGAAAGACAGAGGAGACUUGAAAGAAUAAAACAGAA2000000006ACAGUCUCAACUUCAAGAACUUAUUCUAC2000000006AGCAAAUUGCCUUCAAGAACCUGGUGCAGAGAAACCGGCAUGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACUCAGUCA2000000009UCCACCUGCCCUUCAUCAUCGUCAACACCAGCAAGAAGACGGUCAUCGACUGCAGCAUCUCCAAUGACAAAUUUGAGUAUCUGUUUAAUUUUGACAACACAUUUGAAAUCCACGAUGACAUAGAAGUGCUGAAGCGGAUGGGCAUGGCUUGCGGGCUGGAGUCGGGGAGCUGCUCUGCCGAAGACCUUAAAAUGGCCAGAAGUCUGGUCCCCAAGGCUCUGGAGCCAUACGUGACAGAAAUGGCUCAGGGAACUGUUGGAGGCGUGUUCAUCACGACGGCAGGUUCCACGUCUAACGGCACAAGGUUCUCUGCCAGUGACCUGACCAACGGUGCAGAUGGGAUGCUGGCCACA2000000006AGCUCCAAUGGGUCUCAGUACAGCGGCUCCAGGGUGGAGACUCCGGUGUCCUACGUCGGGGAGGACGACGAGGAGGACGAUGACUUCAACGAGAAUGACGAGGACGACUGACGUCCUCCCCACUUCAGAUUCGGCUUCAGGAAAACGUUUAGCGAAAAGAA2000000006ACUUUUUUUUUAAUGUGGGUUUUCUGUUUCCUUUUGGCCUACUCCCAAGAAGAUAUUGGUAAGCUAUUGAAUUUAGAUAUGCACCUCUGAUAAGCAAGGAUUGUUUCCCGUAGGAUUAGGACGUGCUGUGGAUGUGUGUUUUGAUACCAGUGUGCUGAUGCAGAGCGUUUAUUUACUUGUUAGGAUUUUGUGUUUUCAUUUGCUAUUUUUCU2000000009UUAAGUGCAGAGUUCAUUUUUGCCCCUGAAAAGUUUUUGCUGAGUUUGCUGAAGAAAUUGUAUUUCAACCACA2000000009UCCAUGAAAAUAAAACACC2000000009UCCUGUUGUGGAUGGUGAGCCCCUGAUGCCGCUUAUUUGCCGUGAGUUUGGACGGCACCCCUGCUGGCGGAUAGCAAG2000000006ACUCUGUGGAGUUUGUUCAGUGGUACGGUGUCCAAGCAA2000000006ACAGCAGAAUGCAACUUUCUAA2000000006ACAGCCCCAAGCAA2000000006ACAGCAGAAUUCAACUUUUUAA2000000006ACAAUAAACACCAUCAACCUUAUUG2000000006ACU2000000009UUAUUGUCCCUUAAAUUAUAUUG2000000006ACUGUUGUGAUUCCAUCAAGUUUGUACACUCUUUUCUCUCCCUGUUUUGCAGCAACAAAUUGCGAAGUGCUUUUGUUUGUUUGUUUUCGUUUGGUUAAAGCUUAUUGCCAUGCUGGUGCGGCUAUGGAGACUGUCUGGAAGGCUUGGAAUGGUUUAUUGCUUAUGGUAAAAUUUGCCUGAUUUCUUACAGGCAGCGUUUGGAAACCUUUUAUUAUAUAGUUGUUUAC2000000006AUACUUAUAAGUCUAUCAUUUAAAG2000000006ACAUGUACUGAAACAAAUGUAUUUGUUUCAUAAGCAUCUUCCUGUAAUCUAUUAUAAAAUUGAAAUUAAAUAUAGAGAAUGUUUUAACAAUUUUUUA2000000006ACUCAAAAUUUGUCAAUCAUUUUUAAUAGUUCUUUUUUUAUAAAAAGAAAAAGGAAUUUAAGGACAGGCAGUAGUCUCUUUUAAAAUUUAUUCACAAAACCCAUUA2000000006ACUGCACAGUUGCUAUUAGCUGCCUGUUCUAAAACGAUAGUCUUUUUAUUGAAACACAAAUAAACUUUUCUGUAAUAUUUUAUGGUAUAUAAAGAGACU2000000009UUAAUUGUUUGACUUGUUUA2000000006ACUUGGCACUGUUAGUUUUUAUUAAUAAAACGCGCAUGGGCAUUUUAAACAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 199 309 421 857 886 970 1323 1484 1696 1769 1788 1866 1905 1927 1941 1963 1988 1991 2014 2241 2266 2363 2469 2568 2588
Modification positions m6A Y m6A m6A m6A Y m6A m6A Y Y Y m6A m6A m6A m6A m6A m6A Y m6A m6A m6A m6A m6A Y m6A
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM