Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000680254
Gene Name: ENSG00000213995
Sequence (UNICHARACTER ENCODING) AAUGGCUGUGUUUCCGGCGACGGCGCGGGGGCAGCUGGGAAUCCGGAAUGCUGCCCGAUGGCCCUGGGUCCUCGCUGUGGGGCAAUCCGGGCUUGCAGACGAGUUUUAGAAAGAGCGUUUUCGCUACGUAAAGCACAUUCGAUAAAGGAUAUGGAAAAUACUUUGCAGCUGGUGAGAAAUAUCAUACCUCCUCUGUCUUCCACAAAGCACAAAGGGCAAGAUGGAAGAAUAGGCGUAGUUGGAGGCUGUCAGGAGUACACUGGAGCCCCAUAUUUUGCAGCAAUCUCAGCUCUCAAAGUGGGCGCAGACUUGUCCCACGUGUUCUGUGCCAGUGCGGCCGCACCUGUGAUUAAGGCCUACAGCCCGGAGCUGAUCGUCCACCCAGUUCUUGACAGCCCCAAUGCUGUUCAUGAGGUGGAGAAGUGGCUGCCCCGGCUGCAUGCUCUUGUCGUAGGACCUGGCUUGGGUAGAGAUGAUGCGCUUCUCAGAAAUGUCCAGGGCAUUUUGGAAGUGUCAAAGGCCAGGGACAUCCCUGUUGUCAUCGACGCGGAUGGCCUGUGGCUGGUCGCUCAGCAGCCGGCCCUCAUCCAUGGCUACCGGAAGGCUGUGCUCACUCCCAACCACGUGGAGUUCAGCAGЖCUGUAUGACGCUGUGCUCAGAGGCCCUAUGGACAGCGAUGACAGCCAUGGAUCUGUGCUAAGACUCAGCCAAGCCCUGGGCAACGUGACGGUGGUCCAGAAAGGAGAGCGCGACAPCCUCUCCAACGGCCAGCAGGUGCUUGUGUGCAGCCAGGAAGGCAGCAGCCGCAGGUGUGGAGGGCAAGGGGACCUCCUGUCGGGCUCCCUGGGCGUCCUGGUACACUGGGCGCUCCUUGCUGGACCACAGAAAACAAAUGGGUCCAGCCCUCUCCUGGUGGCCGCGUUUGGCGCCUGCUCUCUCACCAGGCAGUGCAACCACCAAGCCUUCCAGAAGCACGGUCGCUCCACCACCACCPCCGACAUGAUCGCCGAGGUGGGGGCCGCCUUCAGCAAGCUCUUUGAAACCUGAGCCCGCGCAGACCAGAAGUAAЖCAGGCACCUUGGACGGGGGAGAGCGUGUGUGUGAUGGGAAAAUCCGGACCCACGCGUGUGCUGAAGGCGUACGGUGCUUGCCAGAUUUUCAACUUGAGCAUAAAUUGGUUGCCAUUGAGAAUUUAAGAAUCUGGAAUAUUGCAGCUUUUGGUUAAЖCUUAAUGCAUGGUUGGAGAUGUUAUGGCGACACUAAЖCAAAGUAUUCCUGAЖCUUUCCUUAGCUCCUUGGUAGUAACUGGGAAGACAGAAAUGAAGAAAAUCACAUGAGAAUGAAGAAUUCUPUAGCAGCUCAACAGAGUUUCUCGGCCUGCUCCCAGAUCGGCGAAGUUUCUACUUGUUACUCUCUCUGCCGGCGCCCUUCGUUCCPCCUCUGCUUCCCUUCCCUAGUCUUUCCPCCGGCAGGGAGCUGGGCAGGGGUCCCCGGGUGUCUCCCUGAGUCCCGACUGCACUGЖCUGGGUCCAUCAGAGGGCUGCUUCGUUCUCCAGCUCAUCUUCUUUUAAAGUGGUGACUAGCUUGGUGGUAUCUGGCUGCUGGUGUUUGGCUUAUUGЖCAUACUCCAGGGUAAUCAAUGAUGЖCUUUGUUUGGAAACCCUUUUGGAGGCACCAUGGGAACAGAAGGAAACAUGAGUGACGCUGACCCUUGAGUGUGUGGGUGGGGAGCUCUGAGACGCCUCCUGUCCCACGCUCUCCGGUGUCCGUGUCUACACAGGGGUCCCCAUGAUACCCACCGGCCCCAGCAGGGCAGACCGGACCGGGGACGGGCACGGUGAAGGGCUGCAGCCUGGGGUCUGACGUGGCCCCUAGUGCUGUCUCAGGAGAAGGCUCUGGAGGЖCUUGAGGCAUGCUGGGCCUGGUGCAGUGAUGGCGCUAAGGAGACCCGGGGAAAGЖCAGUAUCGUGGUCACGUAUGCUUAGGAAGCAGCACAGCCGUGUCCUUAGGGAUGUUCGCGUCCAGUAAAGЖCACUGGUAACUGCGGUUUCAGCCAACACUCUUCAUGGCAGUGUCGACCUCGGGUUAGCUUCUGUUGUCUUUGUGGAUGGUUUUCCUGGAGCGGCCUGACGUUGACGUGUUCUCUGGUCCCAUGUCUUAGCGGGGCAUGGUACGGUUUCGUGCCUGACGCGUGCAUUAGGGUGUUCUCUUAUACUUUCAGUAGCAUCUUUCCACAGCAAGGGCCAAACCCUCCUGGUUCCCUUCAGAGUCUUUUUGGCCUGAUGAUGЖCUCUUGAGUGAUACCCUGUGAUGCAGACAUGCCCCAGAUGGAUUCUACUUUCUPUAAAACUAGGGЖCUUUCAAGAUUAAAAAAAAGAUUGUCACUACUAAUUUGACGCCUAЖCUUCAGAAGCUUCACUGUCUACAUGUGAЖCUUUUCCAGAAAAЖCUGUGCCAUGGЖCAUUUUUCCUCUGGGGAAUUAЖCAUCUAAAUUCUGGUAACUAUUAAAAGACAGAUCUGGUUAAUUUAAA
Sequence (SHORT NAMES ENCODING) AAUGGCUGUGUUUCCGGCGACGGCGCGGGGGCAGCUGGGAAUCCGGAAUGCUGCCCGAUGGCCCUGGGUCCUCGCUGUGGGGCAAUCCGGGCUUGCAGACGAGUUUUAGAAAGAGCGUUUUCGCUACGUAAAGCACAUUCGAUAAAGGAUAUGGAAAAUACUUUGCAGCUGGUGAGAAAUAUCAUACCUCCUCUGUCUUCCACAAAGCACAAAGGGCAAGAUGGAAGAAUAGGCGUAGUUGGAGGCUGUCAGGAGUACACUGGAGCCCCAUAUUUUGCAGCAAUCUCAGCUCUCAAAGUGGGCGCAGACUUGUCCCACGUGUUCUGUGCCAGUGCGGCCGCACCUGUGAUUAAGGCCUACAGCCCGGAGCUGAUCGUCCACCCAGUUCUUGACAGCCCCAAUGCUGUUCAUGAGGUGGAGAAGUGGCUGCCCCGGCUGCAUGCUCUUGUCGUAGGACCUGGCUUGGGUAGAGAUGAUGCGCUUCUCAGAAAUGUCCAGGGCAUUUUGGAAGUGUCAAAGGCCAGGGACAUCCCUGUUGUCAUCGACGCGGAUGGCCUGUGGCUGGUCGCUCAGCAGCCGGCCCUCAUCCAUGGCUACCGGAAGGCUGUGCUCACUCCCAACCACGUGGAGUUCAGCAGm6ACUGUAUGACGCUGUGCUCAGAGGCCCUAUGGACAGCGAUGACAGCCAUGGAUCUGUGCUAAGACUCAGCCAAGCCCUGGGCAACGUGACGGUGGUCCAGAAAGGAGAGCGCGACAYCCUCUCCAACGGCCAGCAGGUGCUUGUGUGCAGCCAGGAAGGCAGCAGCCGCAGGUGUGGAGGGCAAGGGGACCUCCUGUCGGGCUCCCUGGGCGUCCUGGUACACUGGGCGCUCCUUGCUGGACCACAGAAAACAAAUGGGUCCAGCCCUCUCCUGGUGGCCGCGUUUGGCGCCUGCUCUCUCACCAGGCAGUGCAACCACCAAGCCUUCCAGAAGCACGGUCGCUCCACCACCACCYCCGACAUGAUCGCCGAGGUGGGGGCCGCCUUCAGCAAGCUCUUUGAAACCUGAGCCCGCGCAGACCAGAAGUAAm6ACAGGCACCUUGGACGGGGGAGAGCGUGUGUGUGAUGGGAAAAUCCGGACCCACGCGUGUGCUGAAGGCGUACGGUGCUUGCCAGAUUUUCAACUUGAGCAUAAAUUGGUUGCCAUUGAGAAUUUAAGAAUCUGGAAUAUUGCAGCUUUUGGUUAAm6ACUUAAUGCAUGGUUGGAGAUGUUAUGGCGACACUAAm6ACAAAGUAUUCCUGAm6ACUUUCCUUAGCUCCUUGGUAGUAACUGGGAAGACAGAAAUGAAGAAAAUCACAUGAGAAUGAAGAAUUCUYUAGCAGCUCAACAGAGUUUCUCGGCCUGCUCCCAGAUCGGCGAAGUUUCUACUUGUUACUCUCUCUGCCGGCGCCCUUCGUUCCYCCUCUGCUUCCCUUCCCUAGUCUUUCCYCCGGCAGGGAGCUGGGCAGGGGUCCCCGGGUGUCUCCCUGAGUCCCGACUGCACUGm6ACUGGGUCCAUCAGAGGGCUGCUUCGUUCUCCAGCUCAUCUUCUUUUAAAGUGGUGACUAGCUUGGUGGUAUCUGGCUGCUGGUGUUUGGCUUAUUGm6ACAUACUCCAGGGUAAUCAAUGAUGm6ACUUUGUUUGGAAACCCUUUUGGAGGCACCAUGGGAACAGAAGGAAACAUGAGUGACGCUGACCCUUGAGUGUGUGGGUGGGGAGCUCUGAGACGCCUCCUGUCCCACGCUCUCCGGUGUCCGUGUCUACACAGGGGUCCCCAUGAUACCCACCGGCCCCAGCAGGGCAGACCGGACCGGGGACGGGCACGGUGAAGGGCUGCAGCCUGGGGUCUGACGUGGCCCCUAGUGCUGUCUCAGGAGAAGGCUCUGGAGGm6ACUUGAGGCAUGCUGGGCCUGGUGCAGUGAUGGCGCUAAGGAGACCCGGGGAAAGm6ACAGUAUCGUGGUCACGUAUGCUUAGGAAGCAGCACAGCCGUGUCCUUAGGGAUGUUCGCGUCCAGUAAAGm6ACACUGGUAACUGCGGUUUCAGCCAACACUCUUCAUGGCAGUGUCGACCUCGGGUUAGCUUCUGUUGUCUUUGUGGAUGGUUUUCCUGGAGCGGCCUGACGUUGACGUGUUCUCUGGUCCCAUGUCUUAGCGGGGCAUGGUACGGUUUCGUGCCUGACGCGUGCAUUAGGGUGUUCUCUUAUACUUUCAGUAGCAUCUUUCCACAGCAAGGGCCAAACCCUCCUGGUUCCCUUCAGAGUCUUUUUGGCCUGAUGAUGm6ACUCUUGAGUGAUACCCUGUGAUGCAGACAUGCCCCAGAUGGAUUCUACUUUCUYUAAAACUAGGGm6ACUUUCAAGAUUAAAAAAAAGAUUGUCACUACUAAUUUGACGCCUAm6ACUUCAGAAGCUUCACUGUCUACAUGUGAm6ACUUUUCCAGAAAAm6ACUGUGCCAUGGm6ACAUUUUUCCUCUGGGGAAUUAm6ACAUCUAAAUUCUGGUAACUAUUAAAAGACAGAUCUGGUUAAUUUAAA
Sequence (MODOMICS CODE ENCODING) AAUGGCUGUGUUUCCGGCGACGGCGCGGGGGCAGCUGGGAAUCCGGAAUGCUGCCCGAUGGCCCUGGGUCCUCGCUGUGGGGCAAUCCGGGCUUGCAGACGAGUUUUAGAAAGAGCGUUUUCGCUACGUAAAGCACAUUCGAUAAAGGAUAUGGAAAAUACUUUGCAGCUGGUGAGAAAUAUCAUACCUCCUCUGUCUUCCACAAAGCACAAAGGGCAAGAUGGAAGAAUAGGCGUAGUUGGAGGCUGUCAGGAGUACACUGGAGCCCCAUAUUUUGCAGCAAUCUCAGCUCUCAAAGUGGGCGCAGACUUGUCCCACGUGUUCUGUGCCAGUGCGGCCGCACCUGUGAUUAAGGCCUACAGCCCGGAGCUGAUCGUCCACCCAGUUCUUGACAGCCCCAAUGCUGUUCAUGAGGUGGAGAAGUGGCUGCCCCGGCUGCAUGCUCUUGUCGUAGGACCUGGCUUGGGUAGAGAUGAUGCGCUUCUCAGAAAUGUCCAGGGCAUUUUGGAAGUGUCAAAGGCCAGGGACAUCCCUGUUGUCAUCGACGCGGAUGGCCUGUGGCUGGUCGCUCAGCAGCCGGCCCUCAUCCAUGGCUACCGGAAGGCUGUGCUCACUCCCAACCACGUGGAGUUCAGCAG2000000006ACUGUAUGACGCUGUGCUCAGAGGCCCUAUGGACAGCGAUGACAGCCAUGGAUCUGUGCUAAGACUCAGCCAAGCCCUGGGCAACGUGACGGUGGUCCAGAAAGGAGAGCGCGACA2000000009UCCUCUCCAACGGCCAGCAGGUGCUUGUGUGCAGCCAGGAAGGCAGCAGCCGCAGGUGUGGAGGGCAAGGGGACCUCCUGUCGGGCUCCCUGGGCGUCCUGGUACACUGGGCGCUCCUUGCUGGACCACAGAAAACAAAUGGGUCCAGCCCUCUCCUGGUGGCCGCGUUUGGCGCCUGCUCUCUCACCAGGCAGUGCAACCACCAAGCCUUCCAGAAGCACGGUCGCUCCACCACCACC2000000009UCCGACAUGAUCGCCGAGGUGGGGGCCGCCUUCAGCAAGCUCUUUGAAACCUGAGCCCGCGCAGACCAGAAGUAA2000000006ACAGGCACCUUGGACGGGGGAGAGCGUGUGUGUGAUGGGAAAAUCCGGACCCACGCGUGUGCUGAAGGCGUACGGUGCUUGCCAGAUUUUCAACUUGAGCAUAAAUUGGUUGCCAUUGAGAAUUUAAGAAUCUGGAAUAUUGCAGCUUUUGGUUAA2000000006ACUUAAUGCAUGGUUGGAGAUGUUAUGGCGACACUAA2000000006ACAAAGUAUUCCUGA2000000006ACUUUCCUUAGCUCCUUGGUAGUAACUGGGAAGACAGAAAUGAAGAAAAUCACAUGAGAAUGAAGAAUUCU2000000009UUAGCAGCUCAACAGAGUUUCUCGGCCUGCUCCCAGAUCGGCGAAGUUUCUACUUGUUACUCUCUCUGCCGGCGCCCUUCGUUCC2000000009UCCUCUGCUUCCCUUCCCUAGUCUUUCC2000000009UCCGGCAGGGAGCUGGGCAGGGGUCCCCGGGUGUCUCCCUGAGUCCCGACUGCACUG2000000006ACUGGGUCCAUCAGAGGGCUGCUUCGUUCUCCAGCUCAUCUUCUUUUAAAGUGGUGACUAGCUUGGUGGUAUCUGGCUGCUGGUGUUUGGCUUAUUG2000000006ACAUACUCCAGGGUAAUCAAUGAUG2000000006ACUUUGUUUGGAAACCCUUUUGGAGGCACCAUGGGAACAGAAGGAAACAUGAGUGACGCUGACCCUUGAGUGUGUGGGUGGGGAGCUCUGAGACGCCUCCUGUCCCACGCUCUCCGGUGUCCGUGUCUACACAGGGGUCCCCAUGAUACCCACCGGCCCCAGCAGGGCAGACCGGACCGGGGACGGGCACGGUGAAGGGCUGCAGCCUGGGGUCUGACGUGGCCCCUAGUGCUGUCUCAGGAGAAGGCUCUGGAGG2000000006ACUUGAGGCAUGCUGGGCCUGGUGCAGUGAUGGCGCUAAGGAGACCCGGGGAAAG2000000006ACAGUAUCGUGGUCACGUAUGCUUAGGAAGCAGCACAGCCGUGUCCUUAGGGAUGUUCGCGUCCAGUAAAG2000000006ACACUGGUAACUGCGGUUUCAGCCAACACUCUUCAUGGCAGUGUCGACCUCGGGUUAGCUUCUGUUGUCUUUGUGGAUGGUUUUCCUGGAGCGGCCUGACGUUGACGUGUUCUCUGGUCCCAUGUCUUAGCGGGGCAUGGUACGGUUUCGUGCCUGACGCGUGCAUUAGGGUGUUCUCUUAUACUUUCAGUAGCAUCUUUCCACAGCAAGGGCCAAACCCUCCUGGUUCCCUUCAGAGUCUUUUUGGCCUGAUGAUG2000000006ACUCUUGAGUGAUACCCUGUGAUGCAGACAUGCCCCAGAUGGAUUCUACUUUCU2000000009UUAAAACUAGGG2000000006ACUUUCAAGAUUAAAAAAAAGAUUGUCACUACUAAUUUGACGCCUA2000000006ACUUCAGAAGCUUCACUGUCUACAUGUGA2000000006ACUUUUCCAGAAAA2000000006ACUGUGCCAUGG2000000006ACAUUUUUCCUCUGGGGAAUUA2000000006ACAUCUAAAUUCUGGUAACUAUUAAAAGACAGAUCUGGUUAAUUUAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 639 755 994 1069 1225 1262 1277 1348 1433 1461 1518 1615 1640 1896 1951 2022 2279 2333 2345 2391 2420 2434 2446 2468
Modification positions m6A Y Y m6A m6A m6A m6A Y Y Y m6A m6A m6A m6A m6A m6A m6A Y m6A m6A m6A m6A m6A m6A
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM