Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000680505
Gene Name: ENSG00000213995
Sequence (UNICHARACTER ENCODING) AAUCCGGGCUUGCAGACGAGGUAAGGUCGAUUCCAUUUGGCCCGGGGAUGGUCACACGCGCGGGGGCCGGAACUGCCGUCGCCGGCGCGGUCGUUGUCGCAUUGCUCUCGGCCGCACUCGCGCUGUACGGGCCGCCACUGGACGCAGUUUUAGAAAGAGCGUUUUCGCUACGUAAAGCACAUUCGAUAAAGGAUAUGGAAAAUACUUUGCAGCUGGUGAGAAAUAUCAUACCUCCUCUGUCUUCCACAAAGCACAAAGGGCAAGAUGGAAGAAUAGGCGUAGUUGGAGGCUGUCAGGAGUACACUGGAGCCCCAUAUUUUGCAGCAAUCUCAGCUCUCAAAGUGGGCGCAGACUUGUCCCACGUGUUCUGUGCCAGUGCGGCCGCACCUGUGAUUAAGGCCUACAGCCCGGAGCUGAUCGUCCACCCAGUUCUUGACAGCCCCAAUGCUGUUCAUGAGGUGGAGAAGUGGCUGCCCCGGCUGCAUGCUCUUGUCGUAGGACCUGGCUUGGGUAGAGAUGAUGCGCUUCUCAGAAAUGUCCAGGGCAUUUUGGAAGUGUCAAAGGCCAGGGACAUCCCUGUUGUCAUCGACGCGGAUGGCCUGUGGCUGGUCGCUCAGCAGCCGGCCCUCAUCCAUGGCUACCGGAAGGCUGUGCUCACUCCCAACCACGUGGAGUUCAGCAGЖCUGUAUGACGCUGUGCUCAGAGGCCCUAUGGACAGCGAUGACAGCCAUGGAUCUGUGCUAAGACUCAGCCAAGCCCUGGGCAACGUGACGGUGGUCCAGAAAGGAGAGCGCGACAPCCUCUCCAACGGCCAGCAGGUGCUUGUGUGCAGCCAGGAAGGCAGCAGCCGCAGGUGUGGAGGGCAAGGGGACCUCCUGUCGGGCUCCCUGGGCGUCCUGGUACACUGGGCGCUCCUUGCUGGACCACAGAAAACAAAUGGGUCCAGCCCUCUCCUGGUGGCCGCGUUUGGCGCCUGCUCUCUCACCAGGCAGUGCAACCACCAAGCCUUCCAGAAGCACGGUCGCUCCACCACCACCPCCGACAUGAUCGCCGAGGUGGGGGCCGCCUUCAGCAAGCUCUUUGAAACCUGAGCCCGCGCAGACCAGAAGUAAЖCAGGCACCUUGGACGGGGGAGAGCGUGUGUGUGAUGGGAAAAUCCGGACCCACGCGUGUGCUGAAGGCGUACGGUGCUUGCCAGAUUUUCAACUUGAGCAUAAAUUGGUUGCCAUUGAGAAUUUAAGAAUCUGGAAUAUUGCAGCUUUUGGUUAAЖCUUAAUGCAUGGUUGGAGAUGUUAUGGCGACACUAAЖCAAAGUAUUCCUGAЖCUUUCCUUAGCUCCUUGGUAGUAACUGGGAAGACAGAAAUGAAGAAAAUCACAUGAGAAUGAAGAAUUCUPUAGCAGCUCAACAGAGUUUCUCGGCCUGCUCCCAGAUCGGCGAAGUUUCUACUUGUUACUCUCUCUGCCGGCGCCCUUCGUUCCPCCUCUGCUUCCCUUCCCUAGUCUUUCCPCCGGCAGGGAGCUGGGCAGGGGUCCCCGGGUGUCUCCCUGAGUCCCGACUGCACUGЖCUGGGUCCAUCAGAGGGCUGCUUCGUUCUCCAGCUCAUCUUCUUUUAAAGUGGUGACUAGCUUGGUGGUAUCUGGCUGCUGGUGUUUGGCUUAUUGЖCAUACUCCAGGGUAAUCAAUGAUGЖCUUUGUUUGGAAACCCUUUUGGAGGCACCAUGGGAACAGAAGGAAACAUGAGUGACGCUGACCCUUGAGUGUGUGGGUGGGGAGCUCUGAGACGCCUCCUGUCCCACGCUCUCCGGUGUCCGUGUCUACACAGGGGUCCCCAUGAUACCCACCGGCCCCAGCAGGGCAGACCGGACCGGGGACGGGCACGGUGAAGGGCUGCAGCCUGGGGUCUGACGUGGCCCCUAGUGCUGUCUCAGGAGAAGGCUCUGGAGGЖCUUGAGGCAUGCUGGGCCUGGUGCAGUGAUGGCGCUAAGGAGACCCGGGGAAAGЖCAGUAUCGUGGUCACGUAUGCUUAGGAAGCAGCACAGCCGUGUCCUUAGGGAUGUUCGCGUCCAGUAAAGЖCACUGGUAACUGCGGUUUCAGCCAACACUCUUCAUGGCAGUGUCGACCUCGGGUUAGCUUCUGUUGUCUUUGUGGAUGGUUUUCCUGGAGCGGCCUGACGUUGACGUGUUCUCUGGUCCCAUGUCUUAGCGGGGCAUGGUACGGUUUCGUGCCUGACGCGUGCAUUAGGGUGUUCUCUUAUACUUUCAGUAGCAUCUUUCCACAGCAAGGGCCAAACCCUCCUGGUUCCCUUCAGAGUCUUUUUGGCCUGAUGAUGЖCUCUUGAGUGAUACCCUGUGAUGCAGACAUGCCCCAGAUGGAUUCUACUUUCUPUAAAACUAGGGЖCUUUCAAGAUUAAAAAAAAGAUUGUCACUACUAAUUUGACGCCUAЖCUUCAGAAGCUUCACUGUCUACAUGUGAЖCUUUUCCAGAAAAЖCUGUGCCAUGGЖCAUUUUUCCUCUGGGGAAUUAЖCAUCUAAAUUCUGGUAACUAUUAAAAGACAGAUCUGGUUAAUUUAAA
Sequence (SHORT NAMES ENCODING) AAUCCGGGCUUGCAGACGAGGUAAGGUCGAUUCCAUUUGGCCCGGGGAUGGUCACACGCGCGGGGGCCGGAACUGCCGUCGCCGGCGCGGUCGUUGUCGCAUUGCUCUCGGCCGCACUCGCGCUGUACGGGCCGCCACUGGACGCAGUUUUAGAAAGAGCGUUUUCGCUACGUAAAGCACAUUCGAUAAAGGAUAUGGAAAAUACUUUGCAGCUGGUGAGAAAUAUCAUACCUCCUCUGUCUUCCACAAAGCACAAAGGGCAAGAUGGAAGAAUAGGCGUAGUUGGAGGCUGUCAGGAGUACACUGGAGCCCCAUAUUUUGCAGCAAUCUCAGCUCUCAAAGUGGGCGCAGACUUGUCCCACGUGUUCUGUGCCAGUGCGGCCGCACCUGUGAUUAAGGCCUACAGCCCGGAGCUGAUCGUCCACCCAGUUCUUGACAGCCCCAAUGCUGUUCAUGAGGUGGAGAAGUGGCUGCCCCGGCUGCAUGCUCUUGUCGUAGGACCUGGCUUGGGUAGAGAUGAUGCGCUUCUCAGAAAUGUCCAGGGCAUUUUGGAAGUGUCAAAGGCCAGGGACAUCCCUGUUGUCAUCGACGCGGAUGGCCUGUGGCUGGUCGCUCAGCAGCCGGCCCUCAUCCAUGGCUACCGGAAGGCUGUGCUCACUCCCAACCACGUGGAGUUCAGCAGm6ACUGUAUGACGCUGUGCUCAGAGGCCCUAUGGACAGCGAUGACAGCCAUGGAUCUGUGCUAAGACUCAGCCAAGCCCUGGGCAACGUGACGGUGGUCCAGAAAGGAGAGCGCGACAYCCUCUCCAACGGCCAGCAGGUGCUUGUGUGCAGCCAGGAAGGCAGCAGCCGCAGGUGUGGAGGGCAAGGGGACCUCCUGUCGGGCUCCCUGGGCGUCCUGGUACACUGGGCGCUCCUUGCUGGACCACAGAAAACAAAUGGGUCCAGCCCUCUCCUGGUGGCCGCGUUUGGCGCCUGCUCUCUCACCAGGCAGUGCAACCACCAAGCCUUCCAGAAGCACGGUCGCUCCACCACCACCYCCGACAUGAUCGCCGAGGUGGGGGCCGCCUUCAGCAAGCUCUUUGAAACCUGAGCCCGCGCAGACCAGAAGUAAm6ACAGGCACCUUGGACGGGGGAGAGCGUGUGUGUGAUGGGAAAAUCCGGACCCACGCGUGUGCUGAAGGCGUACGGUGCUUGCCAGAUUUUCAACUUGAGCAUAAAUUGGUUGCCAUUGAGAAUUUAAGAAUCUGGAAUAUUGCAGCUUUUGGUUAAm6ACUUAAUGCAUGGUUGGAGAUGUUAUGGCGACACUAAm6ACAAAGUAUUCCUGAm6ACUUUCCUUAGCUCCUUGGUAGUAACUGGGAAGACAGAAAUGAAGAAAAUCACAUGAGAAUGAAGAAUUCUYUAGCAGCUCAACAGAGUUUCUCGGCCUGCUCCCAGAUCGGCGAAGUUUCUACUUGUUACUCUCUCUGCCGGCGCCCUUCGUUCCYCCUCUGCUUCCCUUCCCUAGUCUUUCCYCCGGCAGGGAGCUGGGCAGGGGUCCCCGGGUGUCUCCCUGAGUCCCGACUGCACUGm6ACUGGGUCCAUCAGAGGGCUGCUUCGUUCUCCAGCUCAUCUUCUUUUAAAGUGGUGACUAGCUUGGUGGUAUCUGGCUGCUGGUGUUUGGCUUAUUGm6ACAUACUCCAGGGUAAUCAAUGAUGm6ACUUUGUUUGGAAACCCUUUUGGAGGCACCAUGGGAACAGAAGGAAACAUGAGUGACGCUGACCCUUGAGUGUGUGGGUGGGGAGCUCUGAGACGCCUCCUGUCCCACGCUCUCCGGUGUCCGUGUCUACACAGGGGUCCCCAUGAUACCCACCGGCCCCAGCAGGGCAGACCGGACCGGGGACGGGCACGGUGAAGGGCUGCAGCCUGGGGUCUGACGUGGCCCCUAGUGCUGUCUCAGGAGAAGGCUCUGGAGGm6ACUUGAGGCAUGCUGGGCCUGGUGCAGUGAUGGCGCUAAGGAGACCCGGGGAAAGm6ACAGUAUCGUGGUCACGUAUGCUUAGGAAGCAGCACAGCCGUGUCCUUAGGGAUGUUCGCGUCCAGUAAAGm6ACACUGGUAACUGCGGUUUCAGCCAACACUCUUCAUGGCAGUGUCGACCUCGGGUUAGCUUCUGUUGUCUUUGUGGAUGGUUUUCCUGGAGCGGCCUGACGUUGACGUGUUCUCUGGUCCCAUGUCUUAGCGGGGCAUGGUACGGUUUCGUGCCUGACGCGUGCAUUAGGGUGUUCUCUUAUACUUUCAGUAGCAUCUUUCCACAGCAAGGGCCAAACCCUCCUGGUUCCCUUCAGAGUCUUUUUGGCCUGAUGAUGm6ACUCUUGAGUGAUACCCUGUGAUGCAGACAUGCCCCAGAUGGAUUCUACUUUCUYUAAAACUAGGGm6ACUUUCAAGAUUAAAAAAAAGAUUGUCACUACUAAUUUGACGCCUAm6ACUUCAGAAGCUUCACUGUCUACAUGUGAm6ACUUUUCCAGAAAAm6ACUGUGCCAUGGm6ACAUUUUUCCUCUGGGGAAUUAm6ACAUCUAAAUUCUGGUAACUAUUAAAAGACAGAUCUGGUUAAUUUAAA
Sequence (MODOMICS CODE ENCODING) AAUCCGGGCUUGCAGACGAGGUAAGGUCGAUUCCAUUUGGCCCGGGGAUGGUCACACGCGCGGGGGCCGGAACUGCCGUCGCCGGCGCGGUCGUUGUCGCAUUGCUCUCGGCCGCACUCGCGCUGUACGGGCCGCCACUGGACGCAGUUUUAGAAAGAGCGUUUUCGCUACGUAAAGCACAUUCGAUAAAGGAUAUGGAAAAUACUUUGCAGCUGGUGAGAAAUAUCAUACCUCCUCUGUCUUCCACAAAGCACAAAGGGCAAGAUGGAAGAAUAGGCGUAGUUGGAGGCUGUCAGGAGUACACUGGAGCCCCAUAUUUUGCAGCAAUCUCAGCUCUCAAAGUGGGCGCAGACUUGUCCCACGUGUUCUGUGCCAGUGCGGCCGCACCUGUGAUUAAGGCCUACAGCCCGGAGCUGAUCGUCCACCCAGUUCUUGACAGCCCCAAUGCUGUUCAUGAGGUGGAGAAGUGGCUGCCCCGGCUGCAUGCUCUUGUCGUAGGACCUGGCUUGGGUAGAGAUGAUGCGCUUCUCAGAAAUGUCCAGGGCAUUUUGGAAGUGUCAAAGGCCAGGGACAUCCCUGUUGUCAUCGACGCGGAUGGCCUGUGGCUGGUCGCUCAGCAGCCGGCCCUCAUCCAUGGCUACCGGAAGGCUGUGCUCACUCCCAACCACGUGGAGUUCAGCAG2000000006ACUGUAUGACGCUGUGCUCAGAGGCCCUAUGGACAGCGAUGACAGCCAUGGAUCUGUGCUAAGACUCAGCCAAGCCCUGGGCAACGUGACGGUGGUCCAGAAAGGAGAGCGCGACA2000000009UCCUCUCCAACGGCCAGCAGGUGCUUGUGUGCAGCCAGGAAGGCAGCAGCCGCAGGUGUGGAGGGCAAGGGGACCUCCUGUCGGGCUCCCUGGGCGUCCUGGUACACUGGGCGCUCCUUGCUGGACCACAGAAAACAAAUGGGUCCAGCCCUCUCCUGGUGGCCGCGUUUGGCGCCUGCUCUCUCACCAGGCAGUGCAACCACCAAGCCUUCCAGAAGCACGGUCGCUCCACCACCACC2000000009UCCGACAUGAUCGCCGAGGUGGGGGCCGCCUUCAGCAAGCUCUUUGAAACCUGAGCCCGCGCAGACCAGAAGUAA2000000006ACAGGCACCUUGGACGGGGGAGAGCGUGUGUGUGAUGGGAAAAUCCGGACCCACGCGUGUGCUGAAGGCGUACGGUGCUUGCCAGAUUUUCAACUUGAGCAUAAAUUGGUUGCCAUUGAGAAUUUAAGAAUCUGGAAUAUUGCAGCUUUUGGUUAA2000000006ACUUAAUGCAUGGUUGGAGAUGUUAUGGCGACACUAA2000000006ACAAAGUAUUCCUGA2000000006ACUUUCCUUAGCUCCUUGGUAGUAACUGGGAAGACAGAAAUGAAGAAAAUCACAUGAGAAUGAAGAAUUCU2000000009UUAGCAGCUCAACAGAGUUUCUCGGCCUGCUCCCAGAUCGGCGAAGUUUCUACUUGUUACUCUCUCUGCCGGCGCCCUUCGUUCC2000000009UCCUCUGCUUCCCUUCCCUAGUCUUUCC2000000009UCCGGCAGGGAGCUGGGCAGGGGUCCCCGGGUGUCUCCCUGAGUCCCGACUGCACUG2000000006ACUGGGUCCAUCAGAGGGCUGCUUCGUUCUCCAGCUCAUCUUCUUUUAAAGUGGUGACUAGCUUGGUGGUAUCUGGCUGCUGGUGUUUGGCUUAUUG2000000006ACAUACUCCAGGGUAAUCAAUGAUG2000000006ACUUUGUUUGGAAACCCUUUUGGAGGCACCAUGGGAACAGAAGGAAACAUGAGUGACGCUGACCCUUGAGUGUGUGGGUGGGGAGCUCUGAGACGCCUCCUGUCCCACGCUCUCCGGUGUCCGUGUCUACACAGGGGUCCCCAUGAUACCCACCGGCCCCAGCAGGGCAGACCGGACCGGGGACGGGCACGGUGAAGGGCUGCAGCCUGGGGUCUGACGUGGCCCCUAGUGCUGUCUCAGGAGAAGGCUCUGGAGG2000000006ACUUGAGGCAUGCUGGGCCUGGUGCAGUGAUGGCGCUAAGGAGACCCGGGGAAAG2000000006ACAGUAUCGUGGUCACGUAUGCUUAGGAAGCAGCACAGCCGUGUCCUUAGGGAUGUUCGCGUCCAGUAAAG2000000006ACACUGGUAACUGCGGUUUCAGCCAACACUCUUCAUGGCAGUGUCGACCUCGGGUUAGCUUCUGUUGUCUUUGUGGAUGGUUUUCCUGGAGCGGCCUGACGUUGACGUGUUCUCUGGUCCCAUGUCUUAGCGGGGCAUGGUACGGUUUCGUGCCUGACGCGUGCAUUAGGGUGUUCUCUUAUACUUUCAGUAGCAUCUUUCCACAGCAAGGGCCAAACCCUCCUGGUUCCCUUCAGAGUCUUUUUGGCCUGAUGAUG2000000006ACUCUUGAGUGAUACCCUGUGAUGCAGACAUGCCCCAGAUGGAUUCUACUUUCU2000000009UUAAAACUAGGG2000000006ACUUUCAAGAUUAAAAAAAAGAUUGUCACUACUAAUUUGACGCCUA2000000006ACUUCAGAAGCUUCACUGUCUACAUGUGA2000000006ACUUUUCCAGAAAA2000000006ACUGUGCCAUGG2000000006ACAUUUUUCCUCUGGGGAAUUA2000000006ACAUCUAAAUUCUGGUAACUAUUAAAAGACAGAUCUGGUUAAUUUAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 683 799 1038 1113 1269 1306 1321 1392 1477 1505 1562 1659 1684 1940 1995 2066 2323 2377 2389 2435 2464 2478 2490 2512
Modification positions m6A Y Y m6A m6A m6A m6A Y Y Y m6A m6A m6A m6A m6A m6A m6A Y m6A m6A m6A m6A m6A m6A
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM