Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000704334
Gene Name: ENSG00000159140
Sequence (UNICHARACTER ENCODING) UGGAGGACUAGCGAGGAGGAGUUGAGAGAACGGAGCGGACGCCAUGGCGACCAACAUCGAGCAGAUUUUUAGGUCUUUCGUGGUCAGUAAAUUCCGGGAAAUUCAACAGGAGCUUUCCAGUGGAAGGAAUGAAGGCCAGCUGAAUGGUGAAACAAAUACACCCAUUGAAGGAAACCAGGCGGGUGAUGCAGCUGCCUCUGCCAGGAGUCUACCAAAUGAAGAAAUAGUGCAGAAGAUAGAGGAAGUACUUUCUGGGGUCUUAGAUACAGAACUACGAUAUAAGCCAGAUAAGGCUCAAUUACUUGAAAUAGCCAAAGCUAAUGCAGCUGCCAUGUGUGCUAAGGCUGGUGUCCCUPUACCACCAAЖCCUAAAGCCUGCACCUCCACCUACUAUAGAAGAGAAAGUUGCUAAAAAGUCAGGAGGAGCUACUAUAGAAGAACUAACUGAGAAAUGUAAЖCAGAUCGCACAGAGUAAAGAAGAUGAUGAUGUAAUAGUGAAUAAACCUCAUGUUUCGGAUGAAGAGGAAGAAGAACCUCCUUUUUAUCAUCAPCCCUPUAAACUCAGUGAACCCAAACCUAUUUUUUUCAAUCUGAAUAUUGCUGCAGCAAAACCAACUCCACCAAAAAGCCAGGUAACAUUAACAAAAGAAUUCCCUGUAUCAUCUGGAUCUCAACAUCGGAAAAAAGAAGCGGAUAGUGUUUAUGGAGAAUGGGUUCCUGUGGAGAAAAAUGGUGAAGAAAACAAAGAUGAUGAUAAUGUUUUCAGCAGCAAUUUGCCCUCAGAGCCUGUGGACAUCUCUACAGCAAUGAGUGAACGGGCACUUGCUCAGAAAAGACUCAGUGAGAAUGCAUUUGAUCUUGAAGCCAUGAGCAUGUUAAAUAGAGCUCAGGAAAGGAUUGAUGCCUGGGCUCAGCUGAACUCUAUUCCUGGCCAGUUCACAGGAAGUACAGGAGUACAGGUUUUGACACAAGAACAGUUGGCCAAUACUGGUGCCCAAGCCUGGAUUAAAAAGGAUCAGUUCUUAAGAGCAGCCCCGGUAЖCUGGAGGAAUGGGAGCCGUUUUGAUGAGAAAAAUGGGCUGGAGAGAAGGAGAAGGAUUAGGAAAAAACAAAGAAGGCAAUAAGGAACCCAPCCUAGUUGAUUUUAAGACAGACCGAAAAGGUCUUGUUGCAGUAGGAGAAAGAGCACAAAAGAGGUCUGGGAACUUCUCUGCUGCAAUGAAAGAUCUGUCAGGCAAЖCAPCCUGUGUCUGCUUUGAUGGAGAUCUGUAAUAAAAGAAGGUGGCAACCACCUGAAUUUCUAUUGGUCCAUGAUAGUGGCCCUGAUCAUCGCAAACAUUUUCUCUPUAGGGUAUUGAUAAAUGGAAGCGCUUACCAGCCCAGCUUUGCCAGCCCUAAUAAGAAGCAUGCUAAAGCCACAGCAGCUACUGUGGUUCUUCAAGCAAUGGGCCUUGUACCAAAGGЖCCUCAUGGCUAAUGCCACUUGCUUCAGGAGUGCCUCACGUAGAUAGAUUGAGGUUUUAUAAUAAUCAUUUCAGAAUUUUACUCUGCAUCACAAUGUAUUUCCUCUPUAAUGUUGUAAAUAUUUGGCAAUUUAAGЖCAUUGUGUAAAAAGCAAUCUGUAAAAACAUCUCCAGGCUUUGAUUUUUGUACCAUGGAAAUUGUAUUUAACCAUACAGGGUUUUGGUAUGUUUAUAUUGUUUACCUUAGUGAUGUAUUUGUUUAAGUGGCUAЖCAPCCAAACGACUGUUUGAAGGCAUCAGAGUAAUCUUCAGUGUGGAAUGUUAAAUAACGCUUUUAUACUGUAUUUUGUACUAUGAUGUAACUCCCCUUCCUUAUGGCUAGGCUACUGUAЖCACUUGCCUGUAAUCAGUGAAGGGCUGUGCACCUUGUACUAUUUCACAAUGGGUUCUGCUGGACAGAUAAUGGGCCAGUGUUAUUGAGGUGAUCAAGAUCUGUUCCACAGGGCUAAUGCCACCAUCUCCCCUCAAAAUUUUGUAGAGGUUCUAAAAAGAAAGUGGUAUGUUGUGUGAUGAUCAGCACUAAGUCCUGCAUUCCUGUUAAAGCCACUUGGGUCAPAAGAAGGGAGUAAAAAAUGAAGUCUGACUAGAAUUCUAUUGCAGAGGCCAGUACAUUUAGUAUGGCAUUGAGUUGUGAUAUAGUUUUACUUUGAUGUGCAUUUUGAAUUUCAGCUACACCUAGAUAGACGUAAAAUGAUAAUUAAAAUGCUGUAACCAACUUAUCUAAUAAAAUUGGCAACCAGCCACUAUUUUGUUGACUAUGAGAAAGUUAAAAGUUUAUGUUAAUUUUUAGGGUCUGAUAGAAUAUUUCAUGUGUAUUACAGUGGUAUUCAUAUGCUAU
Sequence (SHORT NAMES ENCODING) UGGAGGACUAGCGAGGAGGAGUUGAGAGAACGGAGCGGACGCCAUGGCGACCAACAUCGAGCAGAUUUUUAGGUCUUUCGUGGUCAGUAAAUUCCGGGAAAUUCAACAGGAGCUUUCCAGUGGAAGGAAUGAAGGCCAGCUGAAUGGUGAAACAAAUACACCCAUUGAAGGAAACCAGGCGGGUGAUGCAGCUGCCUCUGCCAGGAGUCUACCAAAUGAAGAAAUAGUGCAGAAGAUAGAGGAAGUACUUUCUGGGGUCUUAGAUACAGAACUACGAUAUAAGCCAGAUAAGGCUCAAUUACUUGAAAUAGCCAAAGCUAAUGCAGCUGCCAUGUGUGCUAAGGCUGGUGUCCCUYUACCACCAAm6ACCUAAAGCCUGCACCUCCACCUACUAUAGAAGAGAAAGUUGCUAAAAAGUCAGGAGGAGCUACUAUAGAAGAACUAACUGAGAAAUGUAAm6ACAGAUCGCACAGAGUAAAGAAGAUGAUGAUGUAAUAGUGAAUAAACCUCAUGUUUCGGAUGAAGAGGAAGAAGAACCUCCUUUUUAUCAUCAYCCCUYUAAACUCAGUGAACCCAAACCUAUUUUUUUCAAUCUGAAUAUUGCUGCAGCAAAACCAACUCCACCAAAAAGCCAGGUAACAUUAACAAAAGAAUUCCCUGUAUCAUCUGGAUCUCAACAUCGGAAAAAAGAAGCGGAUAGUGUUUAUGGAGAAUGGGUUCCUGUGGAGAAAAAUGGUGAAGAAAACAAAGAUGAUGAUAAUGUUUUCAGCAGCAAUUUGCCCUCAGAGCCUGUGGACAUCUCUACAGCAAUGAGUGAACGGGCACUUGCUCAGAAAAGACUCAGUGAGAAUGCAUUUGAUCUUGAAGCCAUGAGCAUGUUAAAUAGAGCUCAGGAAAGGAUUGAUGCCUGGGCUCAGCUGAACUCUAUUCCUGGCCAGUUCACAGGAAGUACAGGAGUACAGGUUUUGACACAAGAACAGUUGGCCAAUACUGGUGCCCAAGCCUGGAUUAAAAAGGAUCAGUUCUUAAGAGCAGCCCCGGUAm6ACUGGAGGAAUGGGAGCCGUUUUGAUGAGAAAAAUGGGCUGGAGAGAAGGAGAAGGAUUAGGAAAAAACAAAGAAGGCAAUAAGGAACCCAYCCUAGUUGAUUUUAAGACAGACCGAAAAGGUCUUGUUGCAGUAGGAGAAAGAGCACAAAAGAGGUCUGGGAACUUCUCUGCUGCAAUGAAAGAUCUGUCAGGCAAm6ACAYCCUGUGUCUGCUUUGAUGGAGAUCUGUAAUAAAAGAAGGUGGCAACCACCUGAAUUUCUAUUGGUCCAUGAUAGUGGCCCUGAUCAUCGCAAACAUUUUCUCUYUAGGGUAUUGAUAAAUGGAAGCGCUUACCAGCCCAGCUUUGCCAGCCCUAAUAAGAAGCAUGCUAAAGCCACAGCAGCUACUGUGGUUCUUCAAGCAAUGGGCCUUGUACCAAAGGm6ACCUCAUGGCUAAUGCCACUUGCUUCAGGAGUGCCUCACGUAGAUAGAUUGAGGUUUUAUAAUAAUCAUUUCAGAAUUUUACUCUGCAUCACAAUGUAUUUCCUCUYUAAUGUUGUAAAUAUUUGGCAAUUUAAGm6ACAUUGUGUAAAAAGCAAUCUGUAAAAACAUCUCCAGGCUUUGAUUUUUGUACCAUGGAAAUUGUAUUUAACCAUACAGGGUUUUGGUAUGUUUAUAUUGUUUACCUUAGUGAUGUAUUUGUUUAAGUGGCUAm6ACAYCCAAACGACUGUUUGAAGGCAUCAGAGUAAUCUUCAGUGUGGAAUGUUAAAUAACGCUUUUAUACUGUAUUUUGUACUAUGAUGUAACUCCCCUUCCUUAUGGCUAGGCUACUGUAm6ACACUUGCCUGUAAUCAGUGAAGGGCUGUGCACCUUGUACUAUUUCACAAUGGGUUCUGCUGGACAGAUAAUGGGCCAGUGUUAUUGAGGUGAUCAAGAUCUGUUCCACAGGGCUAAUGCCACCAUCUCCCCUCAAAAUUUUGUAGAGGUUCUAAAAAGAAAGUGGUAUGUUGUGUGAUGAUCAGCACUAAGUCCUGCAUUCCUGUUAAAGCCACUUGGGUCAYAAGAAGGGAGUAAAAAAUGAAGUCUGACUAGAAUUCUAUUGCAGAGGCCAGUACAUUUAGUAUGGCAUUGAGUUGUGAUAUAGUUUUACUUUGAUGUGCAUUUUGAAUUUCAGCUACACCUAGAUAGACGUAAAAUGAUAAUUAAAAUGCUGUAACCAACUUAUCUAAUAAAAUUGGCAACCAGCCACUAUUUUGUUGACUAUGAGAAAGUUAAAAGUUUAUGUUAAUUUUUAGGGUCUGAUAGAAUAUUUCAUGUGUAUUACAGUGGUAUUCAUAUGCUAU
Sequence (MODOMICS CODE ENCODING) UGGAGGACUAGCGAGGAGGAGUUGAGAGAACGGAGCGGACGCCAUGGCGACCAACAUCGAGCAGAUUUUUAGGUCUUUCGUGGUCAGUAAAUUCCGGGAAAUUCAACAGGAGCUUUCCAGUGGAAGGAAUGAAGGCCAGCUGAAUGGUGAAACAAAUACACCCAUUGAAGGAAACCAGGCGGGUGAUGCAGCUGCCUCUGCCAGGAGUCUACCAAAUGAAGAAAUAGUGCAGAAGAUAGAGGAAGUACUUUCUGGGGUCUUAGAUACAGAACUACGAUAUAAGCCAGAUAAGGCUCAAUUACUUGAAAUAGCCAAAGCUAAUGCAGCUGCCAUGUGUGCUAAGGCUGGUGUCCCU2000000009UUACCACCAA2000000006ACCUAAAGCCUGCACCUCCACCUACUAUAGAAGAGAAAGUUGCUAAAAAGUCAGGAGGAGCUACUAUAGAAGAACUAACUGAGAAAUGUAA2000000006ACAGAUCGCACAGAGUAAAGAAGAUGAUGAUGUAAUAGUGAAUAAACCUCAUGUUUCGGAUGAAGAGGAAGAAGAACCUCCUUUUUAUCAUCA2000000009UCCCU2000000009UUAAACUCAGUGAACCCAAACCUAUUUUUUUCAAUCUGAAUAUUGCUGCAGCAAAACCAACUCCACCAAAAAGCCAGGUAACAUUAACAAAAGAAUUCCCUGUAUCAUCUGGAUCUCAACAUCGGAAAAAAGAAGCGGAUAGUGUUUAUGGAGAAUGGGUUCCUGUGGAGAAAAAUGGUGAAGAAAACAAAGAUGAUGAUAAUGUUUUCAGCAGCAAUUUGCCCUCAGAGCCUGUGGACAUCUCUACAGCAAUGAGUGAACGGGCACUUGCUCAGAAAAGACUCAGUGAGAAUGCAUUUGAUCUUGAAGCCAUGAGCAUGUUAAAUAGAGCUCAGGAAAGGAUUGAUGCCUGGGCUCAGCUGAACUCUAUUCCUGGCCAGUUCACAGGAAGUACAGGAGUACAGGUUUUGACACAAGAACAGUUGGCCAAUACUGGUGCCCAAGCCUGGAUUAAAAAGGAUCAGUUCUUAAGAGCAGCCCCGGUA2000000006ACUGGAGGAAUGGGAGCCGUUUUGAUGAGAAAAAUGGGCUGGAGAGAAGGAGAAGGAUUAGGAAAAAACAAAGAAGGCAAUAAGGAACCCA2000000009UCCUAGUUGAUUUUAAGACAGACCGAAAAGGUCUUGUUGCAGUAGGAGAAAGAGCACAAAAGAGGUCUGGGAACUUCUCUGCUGCAAUGAAAGAUCUGUCAGGCAA2000000006ACA2000000009UCCUGUGUCUGCUUUGAUGGAGAUCUGUAAUAAAAGAAGGUGGCAACCACCUGAAUUUCUAUUGGUCCAUGAUAGUGGCCCUGAUCAUCGCAAACAUUUUCUCU2000000009UUAGGGUAUUGAUAAAUGGAAGCGCUUACCAGCCCAGCUUUGCCAGCCCUAAUAAGAAGCAUGCUAAAGCCACAGCAGCUACUGUGGUUCUUCAAGCAAUGGGCCUUGUACCAAAGG2000000006ACCUCAUGGCUAAUGCCACUUGCUUCAGGAGUGCCUCACGUAGAUAGAUUGAGGUUUUAUAAUAAUCAUUUCAGAAUUUUACUCUGCAUCACAAUGUAUUUCCUCU2000000009UUAAUGUUGUAAAUAUUUGGCAAUUUAAG2000000006ACAUUGUGUAAAAAGCAAUCUGUAAAAACAUCUCCAGGCUUUGAUUUUUGUACCAUGGAAAUUGUAUUUAACCAUACAGGGUUUUGGUAUGUUUAUAUUGUUUACCUUAGUGAUGUAUUUGUUUAAGUGGCUA2000000006ACA2000000009UCCAAACGACUGUUUGAAGGCAUCAGAGUAAUCUUCAGUGUGGAAUGUUAAAUAACGCUUUUAUACUGUAUUUUGUACUAUGAUGUAACUCCCCUUCCUUAUGGCUAGGCUACUGUA2000000006ACACUUGCCUGUAAUCAGUGAAGGGCUGUGCACCUUGUACUAUUUCACAAUGGGUUCUGCUGGACAGAUAAUGGGCCAGUGUUAUUGAGGUGAUCAAGAUCUGUUCCACAGGGCUAAUGCCACCAUCUCCCCUCAAAAUUUUGUAGAGGUUCUAAAAAGAAAGUGGUAUGUUGUGUGAUGAUCAGCACUAAGUCCUGCAUUCCUGUUAAAGCCACUUGGGUCA2000000009UAAGAAGGGAGUAAAAAAUGAAGUCUGACUAGAAUUCUAUUGCAGAGGCCAGUACAUUUAGUAUGGCAUUGAGUUGUGAUAUAGUUUUACUUUGAUGUGCAUUUUGAAUUUCAGCUACACCUAGAUAGACGUAAAAUGAUAAUUAAAAUGCUGUAACCAACUUAUCUAAUAAAAUUGGCAACCAGCCACUAUUUUGUUGACUAUGAGAAAGUUAAAAGUUUAUGUUAAUUUUUAGGGUCUGAUAGAAUAUUUCAUGUGUAUUACAGUGGUAUUCAUAUGCUAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 356 366 457 550 555 1040 1131 1237 1240 1344 1461 1567 1596 1729 1732 1849 2072
Modification positions Y m6A m6A Y Y m6A Y m6A Y Y m6A Y m6A m6A Y m6A Y
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM