Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000492864
Gene ID: ENSG00000182362
Gene Name: YBEY
Sequence (UNICHARACTER ENCODING) GUCGCAUUCACCCGCGUGGGUCUGCGGGCGCCCCAGACCCCAGAGGACCCGGCCCCCAACGCUUACCUGUCCCCUCUCCUGUCCCUCCCCCAUUCCAGCCCCUUCUCUCCCCAGCCGUUGCCCCUCCCCGCACCCCGCCGCGUCCGCGCGCCUCUCUCCGCGCGCACCCCCAACCCGCCCCCUUUUCUCUGGGAACCGCUCCUUCCGCUCCGCCCGCCUGGAGUCCUUCUGGCCGGAUUCCGCGGCAUCCUUCCAUAGACCCUCGUUGUUGCUUCCUCCUUGUGGUUCCGUUGCAAACAUUUUUAAAGGGCUGGUUAUUCUUCCUGAAAUGAGUUUGGUGAUUAGAAAUCUGCAGCGAGUCAPCCCCAUCAGGAGAGCGCCACUUCGCAGUAAGAUCGAGAUUGUAAGGAGGAUUUUAGGAGUGCAGAAAUUUGACCUGGGGAUCAUCUGUGUUGACAACAAGAAUAUUCAGCACAUUAAUAGAAUCUACAGAGAUAGAAAUGUCCCAACCGAUGUGCUUUCUUUUCCAUUUCAUGAGCAUCUGAAAGCAGGUGAAUUUCCCCAGCCUGAUUUUCCAGAUGACUACAAUUUGGGAGACAUUUUCCUAGGAGUGGAGUAUAUCUUCCAUCAGUGUAAAGAAAAUGAAGAUUACAAUGACGUCCUGACUGUAAGCGGGGAUGCUGAAAUCAUAUAACCUGGCUCAUGGAACAUGGGCCUUGCAAAGGGGUCAAGAUCACAACCCUGCAUCCAUGUGUGUCCGUGGGUACCGUAAGGGCUACUGGGGGAAGAACCUGUAAGCAGGGUGUGAGGAGCACCCAGGCUGGGUAGGGЖCUGCAUGCCCCAUGCCACAGUUGAAGGAGGGAGAGAACACGCUGUGAAAACACAGAAGCUCCCAGAGAAGCCUUCUCAGCUUUUAUCUCUGGAGUAGAGCAGЖCUAUGUUGAGCUAACACAGACCUGCUGAAUCAGCUUCUUUCUGAGCUGCCAGAAGUACAGAAGUUGGAGCCUCCACCACCUUCCAGAUCUGUUUCUCCUCAGUGUAAUCCACCUAUGGGUUCUUCCUGCCCACUGCACAGЖCAAAACCAAUUCACUGCAAUUGUGGUAUUGCAGUAGAGAAAGAGUUUAACACAGAGCUAGCCAAGCAGAAAGGCUGGAGUUAUUAUUCAACUCAAUCUCCCAGAGAЖCUCAGAGGCUACAGUUUCUACAGGCAAUUUGGCAGGCAGGGGCUAGGGAAUGCCUGCUGCUGAUCGGCUGCAGACGGЖCCAUGGGGUGUCAACGAUUUUUGUCCCCUGAGUCCGCCUCUGCGUGGAGCCACGGGAUCAGCUGAGUCAUGAGUCUCAGGUCCAGGUGGAGUCUGUAGGUUGCCAGAЖCUCAAAAGUCUGAAAAACAUCCCAAAAGACCAUU
Sequence (SHORT NAMES ENCODING) GUCGCAUUCACCCGCGUGGGUCUGCGGGCGCCCCAGACCCCAGAGGACCCGGCCCCCAACGCUUACCUGUCCCCUCUCCUGUCCCUCCCCCAUUCCAGCCCCUUCUCUCCCCAGCCGUUGCCCCUCCCCGCACCCCGCCGCGUCCGCGCGCCUCUCUCCGCGCGCACCCCCAACCCGCCCCCUUUUCUCUGGGAACCGCUCCUUCCGCUCCGCCCGCCUGGAGUCCUUCUGGCCGGAUUCCGCGGCAUCCUUCCAUAGACCCUCGUUGUUGCUUCCUCCUUGUGGUUCCGUUGCAAACAUUUUUAAAGGGCUGGUUAUUCUUCCUGAAAUGAGUUUGGUGAUUAGAAAUCUGCAGCGAGUCAYCCCCAUCAGGAGAGCGCCACUUCGCAGUAAGAUCGAGAUUGUAAGGAGGAUUUUAGGAGUGCAGAAAUUUGACCUGGGGAUCAUCUGUGUUGACAACAAGAAUAUUCAGCACAUUAAUAGAAUCUACAGAGAUAGAAAUGUCCCAACCGAUGUGCUUUCUUUUCCAUUUCAUGAGCAUCUGAAAGCAGGUGAAUUUCCCCAGCCUGAUUUUCCAGAUGACUACAAUUUGGGAGACAUUUUCCUAGGAGUGGAGUAUAUCUUCCAUCAGUGUAAAGAAAAUGAAGAUUACAAUGACGUCCUGACUGUAAGCGGGGAUGCUGAAAUCAUAUAACCUGGCUCAUGGAACAUGGGCCUUGCAAAGGGGUCAAGAUCACAACCCUGCAUCCAUGUGUGUCCGUGGGUACCGUAAGGGCUACUGGGGGAAGAACCUGUAAGCAGGGUGUGAGGAGCACCCAGGCUGGGUAGGGm6ACUGCAUGCCCCAUGCCACAGUUGAAGGAGGGAGAGAACACGCUGUGAAAACACAGAAGCUCCCAGAGAAGCCUUCUCAGCUUUUAUCUCUGGAGUAGAGCAGm6ACUAUGUUGAGCUAACACAGACCUGCUGAAUCAGCUUCUUUCUGAGCUGCCAGAAGUACAGAAGUUGGAGCCUCCACCACCUUCCAGAUCUGUUUCUCCUCAGUGUAAUCCACCUAUGGGUUCUUCCUGCCCACUGCACAGm6ACAAAACCAAUUCACUGCAAUUGUGGUAUUGCAGUAGAGAAAGAGUUUAACACAGAGCUAGCCAAGCAGAAAGGCUGGAGUUAUUAUUCAACUCAAUCUCCCAGAGAm6ACUCAGAGGCUACAGUUUCUACAGGCAAUUUGGCAGGCAGGGGCUAGGGAAUGCCUGCUGCUGAUCGGCUGCAGACGGm6ACCAUGGGGUGUCAACGAUUUUUGUCCCCUGAGUCCGCCUCUGCGUGGAGCCACGGGAUCAGCUGAGUCAUGAGUCUCAGGUCCAGGUGGAGUCUGUAGGUUGCCAGAm6ACUCAAAAGUCUGAAAAACAUCCCAAAAGACCAUU
Sequence (MODOMICS CODE ENCODING) GUCGCAUUCACCCGCGUGGGUCUGCGGGCGCCCCAGACCCCAGAGGACCCGGCCCCCAACGCUUACCUGUCCCCUCUCCUGUCCCUCCCCCAUUCCAGCCCCUUCUCUCCCCAGCCGUUGCCCCUCCCCGCACCCCGCCGCGUCCGCGCGCCUCUCUCCGCGCGCACCCCCAACCCGCCCCCUUUUCUCUGGGAACCGCUCCUUCCGCUCCGCCCGCCUGGAGUCCUUCUGGCCGGAUUCCGCGGCAUCCUUCCAUAGACCCUCGUUGUUGCUUCCUCCUUGUGGUUCCGUUGCAAACAUUUUUAAAGGGCUGGUUAUUCUUCCUGAAAUGAGUUUGGUGAUUAGAAAUCUGCAGCGAGUCA2000000009UCCCCAUCAGGAGAGCGCCACUUCGCAGUAAGAUCGAGAUUGUAAGGAGGAUUUUAGGAGUGCAGAAAUUUGACCUGGGGAUCAUCUGUGUUGACAACAAGAAUAUUCAGCACAUUAAUAGAAUCUACAGAGAUAGAAAUGUCCCAACCGAUGUGCUUUCUUUUCCAUUUCAUGAGCAUCUGAAAGCAGGUGAAUUUCCCCAGCCUGAUUUUCCAGAUGACUACAAUUUGGGAGACAUUUUCCUAGGAGUGGAGUAUAUCUUCCAUCAGUGUAAAGAAAAUGAAGAUUACAAUGACGUCCUGACUGUAAGCGGGGAUGCUGAAAUCAUAUAACCUGGCUCAUGGAACAUGGGCCUUGCAAAGGGGUCAAGAUCACAACCCUGCAUCCAUGUGUGUCCGUGGGUACCGUAAGGGCUACUGGGGGAAGAACCUGUAAGCAGGGUGUGAGGAGCACCCAGGCUGGGUAGGG2000000006ACUGCAUGCCCCAUGCCACAGUUGAAGGAGGGAGAGAACACGCUGUGAAAACACAGAAGCUCCCAGAGAAGCCUUCUCAGCUUUUAUCUCUGGAGUAGAGCAG2000000006ACUAUGUUGAGCUAACACAGACCUGCUGAAUCAGCUUCUUUCUGAGCUGCCAGAAGUACAGAAGUUGGAGCCUCCACCACCUUCCAGAUCUGUUUCUCCUCAGUGUAAUCCACCUAUGGGUUCUUCCUGCCCACUGCACAG2000000006ACAAAACCAAUUCACUGCAAUUGUGGUAUUGCAGUAGAGAAAGAGUUUAACACAGAGCUAGCCAAGCAGAAAGGCUGGAGUUAUUAUUCAACUCAAUCUCCCAGAGA2000000006ACUCAGAGGCUACAGUUUCUACAGGCAAUUUGGCAGGCAGGGGCUAGGGAAUGCCUGCUGCUGAUCGGCUGCAGACGG2000000006ACCAUGGGGUGUCAACGAUUUUUGUCCCCUGAGUCCGCCUCUGCGUGGAGCCACGGGAUCAGCUGAGUCAUGAGUCUCAGGUCCAGGUGGAGUCUGUAGGUUGCCAGA2000000006ACUCAAAAGUCUGAAAAACAUCCCAAAAGACCAUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 363 831 934 1075 1182 1260 1368
Modification Positions Y m6A m6A m6A m6A m6A m6A
Genomic Coordinates 21:46286948:+ 21:46291626:+ 21:46291729:+ 21:46291870:+ 21:46291977:+ 21:46292055:+ 21:46292163:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
5Nnepx5V7yHo
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6UuHp6YApVKv
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
6UuHp6YApVKv
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL