Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000426537
Gene ID: ENSG00000160294
Gene Name: MCM3AP
Sequence (UNICHARACTER ENCODING) GGCAGCGCGGGCCUCGGGGUCCUGGGGCGAGACGGUGAGCGUGGGGGCUGGGCCGGCGCCAGGGGCGCCGUUUCCUUCCCCCACGCAGCUCCGCGCGCCCGGGCCUCCACAUCGUCGCUAACGGAGCGUUGCGGCGCCGGCGACCCCUGGCGAGCCCGGGGCGGGЖCAGUGGCCAGGCCGGCCUGGGCCCAGCGCGUGGCCUCCGCCGUUUCGGGCUGUGCUGGGUGGAAGAUUAGGCUCCCCGGGCACGCCGUCCCCGCCGAGAGGCCUCAGCUUCGUGGCAGCGCCCUCGUCCUUCCAGCCCGCUCGAGGGUGGCCGCCAGGGCGCGAUGAAGGAAUGUGAGAAAGUGCUUAGCGCUCCAGCCGCUCCGAGGGAAGCCAGGUGGGAGGAGAUCCCGAAACGCUAAGGUUUUGACAGCGUUACAGUGAAUUCUCCGGCUGUAGAGAUUGGAGGAAGUCGGGAGAAAUUCGUCUCUAAGUUGUAAGCUUGUUCUAAAGACGAAGGGGAACUCCCUAGUGCUACAGGCUGUUUCAGGAAGCCAAUUAAUUUUGUACACAUAAUACUUAAUUACCUUCUAAUAAUUGGAGCAGAAGAUGAACCCAACUAAUCCUUUCAGUGGGCAGCAGCCUAGUGCUUUUUCGGCGUCUUCUAGUAAUGUAGGAЖCACUUCCAUCUAAGCCGCCAUUUCGAUUUGGUCAACCUUCUCUUUUUGGЖCAAAACAGUACCUUAUCUGGGAAGAGCUCGGGAUUUUCACAGGUAUCCAGCUUUCCAGCGUCUUCUGGAGUAAGUCAUUCCUCUUCAGUGCAAACAUUAGGGUUCACCCAAACCUCAAGUGUUGGЖCCCUUUUCUGGЖCUUGAGCACACUUCCACCUUUGUG
Sequence (SHORT NAMES ENCODING) GGCAGCGCGGGCCUCGGGGUCCUGGGGCGAGACGGUGAGCGUGGGGGCUGGGCCGGCGCCAGGGGCGCCGUUUCCUUCCCCCACGCAGCUCCGCGCGCCCGGGCCUCCACAUCGUCGCUAACGGAGCGUUGCGGCGCCGGCGACCCCUGGCGAGCCCGGGGCGGGm6ACAGUGGCCAGGCCGGCCUGGGCCCAGCGCGUGGCCUCCGCCGUUUCGGGCUGUGCUGGGUGGAAGAUUAGGCUCCCCGGGCACGCCGUCCCCGCCGAGAGGCCUCAGCUUCGUGGCAGCGCCCUCGUCCUUCCAGCCCGCUCGAGGGUGGCCGCCAGGGCGCGAUGAAGGAAUGUGAGAAAGUGCUUAGCGCUCCAGCCGCUCCGAGGGAAGCCAGGUGGGAGGAGAUCCCGAAACGCUAAGGUUUUGACAGCGUUACAGUGAAUUCUCCGGCUGUAGAGAUUGGAGGAAGUCGGGAGAAAUUCGUCUCUAAGUUGUAAGCUUGUUCUAAAGACGAAGGGGAACUCCCUAGUGCUACAGGCUGUUUCAGGAAGCCAAUUAAUUUUGUACACAUAAUACUUAAUUACCUUCUAAUAAUUGGAGCAGAAGAUGAACCCAACUAAUCCUUUCAGUGGGCAGCAGCCUAGUGCUUUUUCGGCGUCUUCUAGUAAUGUAGGAm6ACACUUCCAUCUAAGCCGCCAUUUCGAUUUGGUCAACCUUCUCUUUUUGGm6ACAAAACAGUACCUUAUCUGGGAAGAGCUCGGGAUUUUCACAGGUAUCCAGCUUUCCAGCGUCUUCUGGAGUAAGUCAUUCCUCUUCAGUGCAAACAUUAGGGUUCACCCAAACCUCAAGUGUUGGm6ACCCUUUUCUGGm6ACUUGAGCACACUUCCACCUUUGUG
Sequence (MODOMICS CODE ENCODING) GGCAGCGCGGGCCUCGGGGUCCUGGGGCGAGACGGUGAGCGUGGGGGCUGGGCCGGCGCCAGGGGCGCCGUUUCCUUCCCCCACGCAGCUCCGCGCGCCCGGGCCUCCACAUCGUCGCUAACGGAGCGUUGCGGCGCCGGCGACCCCUGGCGAGCCCGGGGCGGG2000000006ACAGUGGCCAGGCCGGCCUGGGCCCAGCGCGUGGCCUCCGCCGUUUCGGGCUGUGCUGGGUGGAAGAUUAGGCUCCCCGGGCACGCCGUCCCCGCCGAGAGGCCUCAGCUUCGUGGCAGCGCCCUCGUCCUUCCAGCCCGCUCGAGGGUGGCCGCCAGGGCGCGAUGAAGGAAUGUGAGAAAGUGCUUAGCGCUCCAGCCGCUCCGAGGGAAGCCAGGUGGGAGGAGAUCCCGAAACGCUAAGGUUUUGACAGCGUUACAGUGAAUUCUCCGGCUGUAGAGAUUGGAGGAAGUCGGGAGAAAUUCGUCUCUAAGUUGUAAGCUUGUUCUAAAGACGAAGGGGAACUCCCUAGUGCUACAGGCUGUUUCAGGAAGCCAAUUAAUUUUGUACACAUAAUACUUAAUUACCUUCUAAUAAUUGGAGCAGAAGAUGAACCCAACUAAUCCUUUCAGUGGGCAGCAGCCUAGUGCUUUUUCGGCGUCUUCUAGUAAUGUAGGA2000000006ACACUUCCAUCUAAGCCGCCAUUUCGAUUUGGUCAACCUUCUCUUUUUGG2000000006ACAAAACAGUACCUUAUCUGGGAAGAGCUCGGGAUUUUCACAGGUAUCCAGCUUUCCAGCGUCUUCUGGAGUAAGUCAUUCCUCUUCAGUGCAAACAUUAGGGUUCACCCAAACCUCAAGUGUUGG2000000006ACCCUUUUCUGG2000000006ACUUGAGCACACUUCCACCUUUGUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 166 664 714 840 852
Modification Positions m6A m6A m6A m6A m6A
Genomic Coordinates 21:46286019:- 21:46285217:- 21:46285167:- 21:46285041:- 21:46285029:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
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Ap2q43bQLNek
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6AyXsheySjfx
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UN3tNpbCPHYf
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VL7zkHvkfkoB
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WdHxkJGRmFxn
8cMbzB4aD5Se
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3TeAZFYFxgvp
4HMi5ykupT9V
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5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
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aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
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UN3tNpbCPHYf
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KENzb7mwdBd9
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PF5iqBNSbHaa
UKen6WEino9G
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Yfn77uLS5tv8