Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000447939
Gene ID: ENSG00000185437
Gene Name: SH3BGR
Sequence (UNICHARACTER ENCODING) GGAUCAGAGAAGGCUGAAGAAGGUGGAGAAACUGAGGCACAAAAAGAGGGCAGUGAAGAUGUGGGCAACCUCCCUGAAGCCCAGGAGAAGAAUAAAAUGGAAGCUAUGAAGCAACAUUUCAAAUGUCUCUCCACAAACCAAACUCAACAGAAUACUUUGGCUUGAAGCCGGCACACCCAGGGUUACUGAGGЖCUUAUGCUGCCUGACCUGGUUAGAUGUACAUGGAGGUAUCUCCCGAAUCAUACAAAAUUAAAUGUGAAGACCGUUUAUGCAUACCUUCAUGUGCCUGACAGUCUUGGCUUUUGAAGAUUUUUUUUUCUUUUUUGCUCUGCAUAGCUAGACCAUCUUAUUAAUAAUACUCUGAAAAAAAUGAUUUCAAGGCAUGGAAGUUCUCUGUGAUACAACAAUAGUAUUUCUUCAAAUGCGCCUUAUGCUACUUAUCUCAGAAACAGGUUUUAAAAUGAAGUGCUUUCCAGAGAACCAUCAUAUAAAUAAAGAUUAAUAGAAAAAUA
Sequence (SHORT NAMES ENCODING) GGAUCAGAGAAGGCUGAAGAAGGUGGAGAAACUGAGGCACAAAAAGAGGGCAGUGAAGAUGUGGGCAACCUCCCUGAAGCCCAGGAGAAGAAUAAAAUGGAAGCUAUGAAGCAACAUUUCAAAUGUCUCUCCACAAACCAAACUCAACAGAAUACUUUGGCUUGAAGCCGGCACACCCAGGGUUACUGAGGm6ACUUAUGCUGCCUGACCUGGUUAGAUGUACAUGGAGGUAUCUCCCGAAUCAUACAAAAUUAAAUGUGAAGACCGUUUAUGCAUACCUUCAUGUGCCUGACAGUCUUGGCUUUUGAAGAUUUUUUUUUCUUUUUUGCUCUGCAUAGCUAGACCAUCUUAUUAAUAAUACUCUGAAAAAAAUGAUUUCAAGGCAUGGAAGUUCUCUGUGAUACAACAAUAGUAUUUCUUCAAAUGCGCCUUAUGCUACUUAUCUCAGAAACAGGUUUUAAAAUGAAGUGCUUUCCAGAGAACCAUCAUAUAAAUAAAGAUUAAUAGAAAAAUA
Sequence (MODOMICS CODE ENCODING) GGAUCAGAGAAGGCUGAAGAAGGUGGAGAAACUGAGGCACAAAAAGAGGGCAGUGAAGAUGUGGGCAACCUCCCUGAAGCCCAGGAGAAGAAUAAAAUGGAAGCUAUGAAGCAACAUUUCAAAUGUCUCUCCACAAACCAAACUCAACAGAAUACUUUGGCUUGAAGCCGGCACACCCAGGGUUACUGAGG2000000006ACUUAUGCUGCCUGACCUGGUUAGAUGUACAUGGAGGUAUCUCCCGAAUCAUACAAAAUUAAAUGUGAAGACCGUUUAUGCAUACCUUCAUGUGCCUGACAGUCUUGGCUUUUGAAGAUUUUUUUUUCUUUUUUGCUCUGCAUAGCUAGACCAUCUUAUUAAUAAUACUCUGAAAAAAAUGAUUUCAAGGCAUGGAAGUUCUCUGUGAUACAACAAUAGUAUUUCUUCAAAUGCGCCUUAUGCUACUUAUCUCAGAAACAGGUUUUAAAAUGAAGUGCUUUCCAGAGAACCAUCAUAUAAAUAAAGAUUAAUAGAAAAAUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 192
Modification Positions m6A
Genomic Coordinates 21:39515186:+
Level of Experimental Evidence 3
Level of Experimental Reliability 3
Source Sci-ModoM
EUFIDs 6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn