Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000457359
Gene Name: ENSG00000159147
Sequence (UNICHARACTER ENCODING) GCGUCAUGGCCCUUUCGGUGCCCGGCUACUCACCGGGCUUCCGAAAGCCGCCCGAGGUAGUGCGGCUCCGACGGAAAAGGGCCCGGAGCCGUGGAGCUGCCGCCUCCCCGCCCCGUGAGCUGACGGAGCCGGCGGCCCGCCGAGCCGCCCUGGUGGCGGGGCUGCCUCUUCGCCCUUUCCCUGCUGCGGGGGGCAGAGGCGGUGGCAGCGGCGGCGGCCCGGCCGCUGCUCGGAGGAACCCCUUCGCCCGCCUGGACAACCGACCGCGGGUCGCCGCGGAGCCCCCCGACGGGCCGGCCCGCGAGCAGCCGGAGGCCCCGGUCCCGUUUUUAGAUUCUAAUCAAGAAAAUGAUUUGCUAUGGGAAGAGAAGUUUCCUGAAAGAACAACUGUUACUGAAUUACCUCAGACUUCACAUGUAUCAUUCUCCGAGCCUGAUAUUCCGUCCUCAAAAAGUACUGAGUUACCUGUGGACUGGAGUAUUAAAACGCGACUCCUUUUCACCUCUUCUCAACCCUPUACCUGGGCAGAUCAUUUGAAAGCACAGGAAGAAGCUCAAGGUCUUGUCCAGCAUUGUAGGGCAACAGAAGUUACUUUGCCUAAAAGUAUACAGGUCUGUGAGCUPUACUUCUCUAUAUAAUUUGCUGAAGЖCAAAACUUUGCCCCUAUUUCUACGUUUGUACCUAUCAGUUUACUGUCCUGUUCCGAGCAGCAGGAUUAGCUGGAAGUGACUUAAUCACAGCUCUCAUAUCUCCAACAACUCGAGGUUUAAGAGAAGCUAUGAGAAAUGAAGGUAUUGAAUUUUCUCUGCCUPUAAUAAAAGAAAGUGGCCAPAAGAAGGAGACAGCAUCUGGAACAAGCUUGGGAUAUGGGGAGGAGCAAGCCAUCAGUGAUGAGGAUGAAGAGGAAAGUUUUUCCUGGCUGGAAGAGAUGGGUGUGCAAGAUAAAAUUAAAAAGCCAGACAUACUUUCUAUCAAGCUGCGUAAAGAGAAACAUGAAGUACAAAUGGAUCACAGACCUGAAUCUGUUGUGUUGGUAAAAGGAAUCAACACCUPUACAUUGCUCAAUUUUUUGAUUAACUCUAAGAGUUUAGUUGCUACCUCAGGUCCACAGGCAGGACUUCCPCCAACCCUCUUGUCCCCUGUUGCUUUCCGAGGUGCCACAAUGCAAAUGCUUAAGGCACGGAGUGUGAAUGUGAAGACACAAGCUCUUUCUGGAUACAGAGACCAAUUUAGUUUGGAGAUUACAGGUCCUAUCAUGCCUCAUUCUCUGCAUUCACUGACCAUGCUGCUCAAAUCUUCACAGAGUGGAUCUUUCUCUGCAGUACUGUAUCCACACGAGCCAACUGCUGUAUUUAЖCAUCUGCCUGCAAAUGGACAAAGUACUUGAUAUGGAGGUUGUUCAUAAGGAGCUUACUAЖCUGUGGUUUGCACCCUAЖCACUCUGGAGCAACUUAGUCAAAUACCGUUACUUGGGAAAUCAUCUPUACGGAAUGUGGUGCUGAGAGЖCUACAUUUAUAAUUGGAGAUCCUGAACACCAAAGUAAGCCUAAAAGGAAUCUUUGAGGAAAAAAGCCUUCUAGCAAGGAAAUUCAAGAUUCUUGAAGUUGAAGGAAUAUACUGAAAUGUUUAUAAACAUAЖCUUUUACUACЖGUAGCAUCUAAGGUUUUAAAUGUGUUUUACUAUUUUCAGAUUAGAUUUUUAGAUAUAAAGAUGAAAAACUCAGAUAACUCAAAUGAGAUAUCUAUAUCCCUACAACCUAAUUGUAUAUUGAGCAGAAACUGAAUUAAUAUGCUUCCUUGCAAAUGGGAAAUCACAUAGCAGUUACCCCAUGGCAUUGUGACUAAUGGCAUCAGGGCAAAAAUAUGUUACUPUACGAUUUACCUGUUAGCAGGUUCUUGUUUCAUAAAGGUAGAAAAUAAAUACAGACAACAUCUACUGAGCUAGUUGAUUGGUGAUGCUUCUACCUUAAUAUCUUUCCUACUGAUUUAUAAUUCCUPUAUUUUCACAUAUACUAAAACUUUUUAAAUGCAUGUUAAUUCAGAUAAAAAGGCAUUUUGUAUUCCACAUAGAAUAGUGUUAAGAAUUGUGAAGUACACUGAGCUGUCACGGCAAAGUAGUAUUUAAUGUGCUUAUAGGGGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUAGGGGGGGACUGUAUAAUUCACAUUUUUAAAAUAAAAGUGCUUA
Sequence (SHORT NAMES ENCODING) GCGUCAUGGCCCUUUCGGUGCCCGGCUACUCACCGGGCUUCCGAAAGCCGCCCGAGGUAGUGCGGCUCCGACGGAAAAGGGCCCGGAGCCGUGGAGCUGCCGCCUCCCCGCCCCGUGAGCUGACGGAGCCGGCGGCCCGCCGAGCCGCCCUGGUGGCGGGGCUGCCUCUUCGCCCUUUCCCUGCUGCGGGGGGCAGAGGCGGUGGCAGCGGCGGCGGCCCGGCCGCUGCUCGGAGGAACCCCUUCGCCCGCCUGGACAACCGACCGCGGGUCGCCGCGGAGCCCCCCGACGGGCCGGCCCGCGAGCAGCCGGAGGCCCCGGUCCCGUUUUUAGAUUCUAAUCAAGAAAAUGAUUUGCUAUGGGAAGAGAAGUUUCCUGAAAGAACAACUGUUACUGAAUUACCUCAGACUUCACAUGUAUCAUUCUCCGAGCCUGAUAUUCCGUCCUCAAAAAGUACUGAGUUACCUGUGGACUGGAGUAUUAAAACGCGACUCCUUUUCACCUCUUCUCAACCCUYUACCUGGGCAGAUCAUUUGAAAGCACAGGAAGAAGCUCAAGGUCUUGUCCAGCAUUGUAGGGCAACAGAAGUUACUUUGCCUAAAAGUAUACAGGUCUGUGAGCUYUACUUCUCUAUAUAAUUUGCUGAAGm6ACAAAACUUUGCCCCUAUUUCUACGUUUGUACCUAUCAGUUUACUGUCCUGUUCCGAGCAGCAGGAUUAGCUGGAAGUGACUUAAUCACAGCUCUCAUAUCUCCAACAACUCGAGGUUUAAGAGAAGCUAUGAGAAAUGAAGGUAUUGAAUUUUCUCUGCCUYUAAUAAAAGAAAGUGGCCAYAAGAAGGAGACAGCAUCUGGAACAAGCUUGGGAUAUGGGGAGGAGCAAGCCAUCAGUGAUGAGGAUGAAGAGGAAAGUUUUUCCUGGCUGGAAGAGAUGGGUGUGCAAGAUAAAAUUAAAAAGCCAGACAUACUUUCUAUCAAGCUGCGUAAAGAGAAACAUGAAGUACAAAUGGAUCACAGACCUGAAUCUGUUGUGUUGGUAAAAGGAAUCAACACCUYUACAUUGCUCAAUUUUUUGAUUAACUCUAAGAGUUUAGUUGCUACCUCAGGUCCACAGGCAGGACUUCCYCCAACCCUCUUGUCCCCUGUUGCUUUCCGAGGUGCCACAAUGCAAAUGCUUAAGGCACGGAGUGUGAAUGUGAAGACACAAGCUCUUUCUGGAUACAGAGACCAAUUUAGUUUGGAGAUUACAGGUCCUAUCAUGCCUCAUUCUCUGCAUUCACUGACCAUGCUGCUCAAAUCUUCACAGAGUGGAUCUUUCUCUGCAGUACUGUAUCCACACGAGCCAACUGCUGUAUUUAm6ACAUCUGCCUGCAAAUGGACAAAGUACUUGAUAUGGAGGUUGUUCAUAAGGAGCUUACUAm6ACUGUGGUUUGCACCCUAm6ACACUCUGGAGCAACUUAGUCAAAUACCGUUACUUGGGAAAUCAUCUYUACGGAAUGUGGUGCUGAGAGm6ACUACAUUUAUAAUUGGAGAUCCUGAACACCAAAGUAAGCCUAAAAGGAAUCUUUGAGGAAAAAAGCCUUCUAGCAAGGAAAUUCAAGAUUCUUGAAGUUGAAGGAAUAUACUGAAAUGUUUAUAAACAUAm6ACUUUUACUACm6AGUAGCAUCUAAGGUUUUAAAUGUGUUUUACUAUUUUCAGAUUAGAUUUUUAGAUAUAAAGAUGAAAAACUCAGAUAACUCAAAUGAGAUAUCUAUAUCCCUACAACCUAAUUGUAUAUUGAGCAGAAACUGAAUUAAUAUGCUUCCUUGCAAAUGGGAAAUCACAUAGCAGUUACCCCAUGGCAUUGUGACUAAUGGCAUCAGGGCAAAAAUAUGUUACUYUACGAUUUACCUGUUAGCAGGUUCUUGUUUCAUAAAGGUAGAAAAUAAAUACAGACAACAUCUACUGAGCUAGUUGAUUGGUGAUGCUUCUACCUUAAUAUCUUUCCUACUGAUUUAUAAUUCCUYUAUUUUCACAUAUACUAAAACUUUUUAAAUGCAUGUUAAUUCAGAUAAAAAGGCAUUUUGUAUUCCACAUAGAAUAGUGUUAAGAAUUGUGAAGUACACUGAGCUGUCACGGCAAAGUAGUAUUUAAUGUGCUUAUAGGGGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUAGGGGGGGACUGUAUAAUUCACAUUUUUAAAAUAAAAGUGCUUA
Sequence (MODOMICS CODE ENCODING) GCGUCAUGGCCCUUUCGGUGCCCGGCUACUCACCGGGCUUCCGAAAGCCGCCCGAGGUAGUGCGGCUCCGACGGAAAAGGGCCCGGAGCCGUGGAGCUGCCGCCUCCCCGCCCCGUGAGCUGACGGAGCCGGCGGCCCGCCGAGCCGCCCUGGUGGCGGGGCUGCCUCUUCGCCCUUUCCCUGCUGCGGGGGGCAGAGGCGGUGGCAGCGGCGGCGGCCCGGCCGCUGCUCGGAGGAACCCCUUCGCCCGCCUGGACAACCGACCGCGGGUCGCCGCGGAGCCCCCCGACGGGCCGGCCCGCGAGCAGCCGGAGGCCCCGGUCCCGUUUUUAGAUUCUAAUCAAGAAAAUGAUUUGCUAUGGGAAGAGAAGUUUCCUGAAAGAACAACUGUUACUGAAUUACCUCAGACUUCACAUGUAUCAUUCUCCGAGCCUGAUAUUCCGUCCUCAAAAAGUACUGAGUUACCUGUGGACUGGAGUAUUAAAACGCGACUCCUUUUCACCUCUUCUCAACCCU2000000009UUACCUGGGCAGAUCAUUUGAAAGCACAGGAAGAAGCUCAAGGUCUUGUCCAGCAUUGUAGGGCAACAGAAGUUACUUUGCCUAAAAGUAUACAGGUCUGUGAGCU2000000009UUACUUCUCUAUAUAAUUUGCUGAAG2000000006ACAAAACUUUGCCCCUAUUUCUACGUUUGUACCUAUCAGUUUACUGUCCUGUUCCGAGCAGCAGGAUUAGCUGGAAGUGACUUAAUCACAGCUCUCAUAUCUCCAACAACUCGAGGUUUAAGAGAAGCUAUGAGAAAUGAAGGUAUUGAAUUUUCUCUGCCU2000000009UUAAUAAAAGAAAGUGGCCA2000000009UAAGAAGGAGACAGCAUCUGGAACAAGCUUGGGAUAUGGGGAGGAGCAAGCCAUCAGUGAUGAGGAUGAAGAGGAAAGUUUUUCCUGGCUGGAAGAGAUGGGUGUGCAAGAUAAAAUUAAAAAGCCAGACAUACUUUCUAUCAAGCUGCGUAAAGAGAAACAUGAAGUACAAAUGGAUCACAGACCUGAAUCUGUUGUGUUGGUAAAAGGAAUCAACACCU2000000009UUACAUUGCUCAAUUUUUUGAUUAACUCUAAGAGUUUAGUUGCUACCUCAGGUCCACAGGCAGGACUUCC2000000009UCCAACCCUCUUGUCCCCUGUUGCUUUCCGAGGUGCCACAAUGCAAAUGCUUAAGGCACGGAGUGUGAAUGUGAAGACACAAGCUCUUUCUGGAUACAGAGACCAAUUUAGUUUGGAGAUUACAGGUCCUAUCAUGCCUCAUUCUCUGCAUUCACUGACCAUGCUGCUCAAAUCUUCACAGAGUGGAUCUUUCUCUGCAGUACUGUAUCCACACGAGCCAACUGCUGUAUUUA2000000006ACAUCUGCCUGCAAAUGGACAAAGUACUUGAUAUGGAGGUUGUUCAUAAGGAGCUUACUA2000000006ACUGUGGUUUGCACCCUA2000000006ACACUCUGGAGCAACUUAGUCAAAUACCGUUACUUGGGAAAUCAUCU2000000009UUACGGAAUGUGGUGCUGAGAG2000000006ACUACAUUUAUAAUUGGAGAUCCUGAACACCAAAGUAAGCCUAAAAGGAAUCUUUGAGGAAAAAAGCCUUCUAGCAAGGAAAUUCAAGAUUCUUGAAGUUGAAGGAAUAUACUGAAAUGUUUAUAAACAUA2000000006ACUUUUACUAC2000000006AGUAGCAUCUAAGGUUUUAAAUGUGUUUUACUAUUUUCAGAUUAGAUUUUUAGAUAUAAAGAUGAAAAACUCAGAUAACUCAAAUGAGAUAUCUAUAUCCCUACAACCUAAUUGUAUAUUGAGCAGAAACUGAAUUAAUAUGCUUCCUUGCAAAUGGGAAAUCACAUAGCAGUUACCCCAUGGCAUUGUGACUAAUGGCAUCAGGGCAAAAAUAUGUUACU2000000009UUACGAUUUACCUGUUAGCAGGUUCUUGUUUCAUAAAGGUAGAAAAUAAAUACAGACAACAUCUACUGAGCUAGUUGAUUGGUGAUGCUUCUACCUUAAUAUCUUUCCUACUGAUUUAUAAUUCCU2000000009UUAUUUUCACAUAUACUAAAACUUUUUAAAUGCAUGUUAAUUCAGAUAAAAAGGCAUUUUGUAUUCCACAUAGAAUAGUGUUAAGAAUUGUGAAGUACACUGAGCUGUCACGGCAAAGUAGUAUUUAAUGUGCUUAUAGGGGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUAGGGGGGGACUGUAUAAUUCACAUUUUUAAAAUAAAAGUGCUUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 517 623 649 811 831 1052 1122 1355 1415 1433 1480 1502 1633 1644 1865 1991
Modification positions Y Y m6A Y Y Y Y m6A m6A m6A Y m6A m6A m6A Y Y
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM