Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000457807
Gene ID: ENSG00000166979
Gene Name: EVA1C
Sequence (UNICHARACTER ENCODING) CUUUCCCUACGGCCCCCCUCGCUUCCUCCGGCACGGCGGCAACGGAGAUUUCCUCUCGGGGAAACUACGCGGAUCCUUUUCGGGGAUCCUCGCCCCGCCCCAGUUCUCCGCCCCCUCCCCUUUGCUGGGGCGCCUGGGCUGGCCCGCGCAGGGGAGGAGGCUCUGGCAGCCUGGGCAGGGAGGCGGCGGGGGGCCGCGGAGCCGCUGGCCAUCGAUUCUCCCCGCCAUGUGACGCCGUCCUUAGCCCUGCGACCCCCAGCGCGUCCCGGGCCUGCGCCUCCGCCCCGCCGCGCAGCGCACGAUGCUUCUGCCGGGACGCGCACGCCAACCGCCGACGCCCCAGCCCGUGCAGCAUCCCGGCCUCCGCCGGCAGGUAGAGCCGCCGGGGCAGCUCCUGCGCCUCUUCUACUGCACUGUCCUGGUCUGCUCCAAAGAGAUCUCAGCGCUCACCGACUUCUCUGAUGAAUUAAAAAACAAAACCGUGUGUGAAGACCAGGAGCUGAAACUGCACUGCCAUGAAUCCAAGUUCCUCAACAUCUACUCUGCGACCUACGGCAGGAGGACCCAGGAAAGGGACAUCUGCUCCUCCAAGGCAGAGCGGCUCCCCCCUUUCGAUUGCUUGUCUUACUCAGCUUUGCAAGUCCUAUCCCGAAGGUGCUAUGGGAAGCAGAGAUGCAAAAUCAUCGUCAACAAUCACCAUUUUGGAAGCCCCUGUUUGCCAGGCGUGAAAAAAUACCUCACUGUGACCUACGCAUGUGUUCCCAAGAACAUACUCACAGCGAUUGAUCCAGCCAUUGCUAAUCUAAAACCUUCUUUGAAGCAGAAAGAUGGUGAAUAUGGUAAUUUUUAUGGCUUACUACCAGCAUUUCUCUUUAAGUAAAGGUAUAAACUUCGACCCAAGCGGAUCGAAGGUUCUGAGGAAAGAUGGAAUUCUUGUUAGCAACUCUCUGGCAGCCUUUGCUUACAUUAGAGCCCACCCGGAGAGAGCUGCCCUGCUGUUCGUGUCCAGUGUCUGCAUCGGCCUGGCCCUCACACUGUGCGCCCUGGUCAUCAGAGAGUCCUGUGCCAAGGACUUCCGCGACUUGCAGCUGGGGAGGGAGCAGCUGGUGCCAGGAAGUGACAAGGUCGAGGAGGACAGCGAGGAUGAAGAAGAGGAGGAGGACCCCUCUGAGUCUGAUUUCCCAGGGGAЖCUGUCGGGGUUCUGUAGGЖCUUCAUAUCCUAUAUACAGUUCCAUAGAAGCUGCAGAGCUCGCAGAAAGGAUUGAGCGCAGGGAGCAAAUCAUUCAGGAAAUAUGGAUGAЖCAGUGGUUUGGЖCACCUCGCUCCCAAGAAACAUGGGCCAGUUCUACUGAAAACCACAUGCAUCUUGAUGCGAUCGCACUUUCUGAAGAAGGAAGGAUCCCAAAUGCCCCUCCAGUUCUGGUUCACCUGUACCUUCUAUGAAGGAGAAUUCGUCAUGUCAUUCAACACUCGUGAGGCCAGGAAGCUAUUAAAGGGAUGUUUCAAGCUGUUUCUAGCACAUUCCAAAAUAAAUGAGGAGGGAAGAGUCUU
Sequence (SHORT NAMES ENCODING) CUUUCCCUACGGCCCCCCUCGCUUCCUCCGGCACGGCGGCAACGGAGAUUUCCUCUCGGGGAAACUACGCGGAUCCUUUUCGGGGAUCCUCGCCCCGCCCCAGUUCUCCGCCCCCUCCCCUUUGCUGGGGCGCCUGGGCUGGCCCGCGCAGGGGAGGAGGCUCUGGCAGCCUGGGCAGGGAGGCGGCGGGGGGCCGCGGAGCCGCUGGCCAUCGAUUCUCCCCGCCAUGUGACGCCGUCCUUAGCCCUGCGACCCCCAGCGCGUCCCGGGCCUGCGCCUCCGCCCCGCCGCGCAGCGCACGAUGCUUCUGCCGGGACGCGCACGCCAACCGCCGACGCCCCAGCCCGUGCAGCAUCCCGGCCUCCGCCGGCAGGUAGAGCCGCCGGGGCAGCUCCUGCGCCUCUUCUACUGCACUGUCCUGGUCUGCUCCAAAGAGAUCUCAGCGCUCACCGACUUCUCUGAUGAAUUAAAAAACAAAACCGUGUGUGAAGACCAGGAGCUGAAACUGCACUGCCAUGAAUCCAAGUUCCUCAACAUCUACUCUGCGACCUACGGCAGGAGGACCCAGGAAAGGGACAUCUGCUCCUCCAAGGCAGAGCGGCUCCCCCCUUUCGAUUGCUUGUCUUACUCAGCUUUGCAAGUCCUAUCCCGAAGGUGCUAUGGGAAGCAGAGAUGCAAAAUCAUCGUCAACAAUCACCAUUUUGGAAGCCCCUGUUUGCCAGGCGUGAAAAAAUACCUCACUGUGACCUACGCAUGUGUUCCCAAGAACAUACUCACAGCGAUUGAUCCAGCCAUUGCUAAUCUAAAACCUUCUUUGAAGCAGAAAGAUGGUGAAUAUGGUAAUUUUUAUGGCUUACUACCAGCAUUUCUCUUUAAGUAAAGGUAUAAACUUCGACCCAAGCGGAUCGAAGGUUCUGAGGAAAGAUGGAAUUCUUGUUAGCAACUCUCUGGCAGCCUUUGCUUACAUUAGAGCCCACCCGGAGAGAGCUGCCCUGCUGUUCGUGUCCAGUGUCUGCAUCGGCCUGGCCCUCACACUGUGCGCCCUGGUCAUCAGAGAGUCCUGUGCCAAGGACUUCCGCGACUUGCAGCUGGGGAGGGAGCAGCUGGUGCCAGGAAGUGACAAGGUCGAGGAGGACAGCGAGGAUGAAGAAGAGGAGGAGGACCCCUCUGAGUCUGAUUUCCCAGGGGAm6ACUGUCGGGGUUCUGUAGGm6ACUUCAUAUCCUAUAUACAGUUCCAUAGAAGCUGCAGAGCUCGCAGAAAGGAUUGAGCGCAGGGAGCAAAUCAUUCAGGAAAUAUGGAUGAm6ACAGUGGUUUGGm6ACACCUCGCUCCCAAGAAACAUGGGCCAGUUCUACUGAAAACCACAUGCAUCUUGAUGCGAUCGCACUUUCUGAAGAAGGAAGGAUCCCAAAUGCCCCUCCAGUUCUGGUUCACCUGUACCUUCUAUGAAGGAGAAUUCGUCAUGUCAUUCAACACUCGUGAGGCCAGGAAGCUAUUAAAGGGAUGUUUCAAGCUGUUUCUAGCACAUUCCAAAAUAAAUGAGGAGGGAAGAGUCUU
Sequence (MODOMICS CODE ENCODING) CUUUCCCUACGGCCCCCCUCGCUUCCUCCGGCACGGCGGCAACGGAGAUUUCCUCUCGGGGAAACUACGCGGAUCCUUUUCGGGGAUCCUCGCCCCGCCCCAGUUCUCCGCCCCCUCCCCUUUGCUGGGGCGCCUGGGCUGGCCCGCGCAGGGGAGGAGGCUCUGGCAGCCUGGGCAGGGAGGCGGCGGGGGGCCGCGGAGCCGCUGGCCAUCGAUUCUCCCCGCCAUGUGACGCCGUCCUUAGCCCUGCGACCCCCAGCGCGUCCCGGGCCUGCGCCUCCGCCCCGCCGCGCAGCGCACGAUGCUUCUGCCGGGACGCGCACGCCAACCGCCGACGCCCCAGCCCGUGCAGCAUCCCGGCCUCCGCCGGCAGGUAGAGCCGCCGGGGCAGCUCCUGCGCCUCUUCUACUGCACUGUCCUGGUCUGCUCCAAAGAGAUCUCAGCGCUCACCGACUUCUCUGAUGAAUUAAAAAACAAAACCGUGUGUGAAGACCAGGAGCUGAAACUGCACUGCCAUGAAUCCAAGUUCCUCAACAUCUACUCUGCGACCUACGGCAGGAGGACCCAGGAAAGGGACAUCUGCUCCUCCAAGGCAGAGCGGCUCCCCCCUUUCGAUUGCUUGUCUUACUCAGCUUUGCAAGUCCUAUCCCGAAGGUGCUAUGGGAAGCAGAGAUGCAAAAUCAUCGUCAACAAUCACCAUUUUGGAAGCCCCUGUUUGCCAGGCGUGAAAAAAUACCUCACUGUGACCUACGCAUGUGUUCCCAAGAACAUACUCACAGCGAUUGAUCCAGCCAUUGCUAAUCUAAAACCUUCUUUGAAGCAGAAAGAUGGUGAAUAUGGUAAUUUUUAUGGCUUACUACCAGCAUUUCUCUUUAAGUAAAGGUAUAAACUUCGACCCAAGCGGAUCGAAGGUUCUGAGGAAAGAUGGAAUUCUUGUUAGCAACUCUCUGGCAGCCUUUGCUUACAUUAGAGCCCACCCGGAGAGAGCUGCCCUGCUGUUCGUGUCCAGUGUCUGCAUCGGCCUGGCCCUCACACUGUGCGCCCUGGUCAUCAGAGAGUCCUGUGCCAAGGACUUCCGCGACUUGCAGCUGGGGAGGGAGCAGCUGGUGCCAGGAAGUGACAAGGUCGAGGAGGACAGCGAGGAUGAAGAAGAGGAGGAGGACCCCUCUGAGUCUGAUUUCCCAGGGGA2000000006ACUGUCGGGGUUCUGUAGG2000000006ACUUCAUAUCCUAUAUACAGUUCCAUAGAAGCUGCAGAGCUCGCAGAAAGGAUUGAGCGCAGGGAGCAAAUCAUUCAGGAAAUAUGGAUGA2000000006ACAGUGGUUUGG2000000006ACACCUCGCUCCCAAGAAACAUGGGCCAGUUCUACUGAAAACCACAUGCAUCUUGAUGCGAUCGCACUUUCUGAAGAAGGAAGGAUCCCAAAUGCCCCUCCAGUUCUGGUUCACCUGUACCUUCUAUGAAGGAGAAUUCGUCAUGUCAUUCAACACUCGUGAGGCCAGGAAGCUAUUAAAGGGAUGUUUCAAGCUGUUUCUAGCACAUUCCAAAAUAAAUGAGGAGGGAAGAGUCUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1190 1209 1300 1312
Modification Positions m6A m6A m6A m6A
Genomic Coordinates 21:32515031:+ 21:32515050:+ 21:32515141:+ 21:32515153:+
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
93arJtwJmuS9
Lny8GcCeVGc9
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
D6ncpa2PPWj3
BsCW7emuRX7M
Lny8GcCeVGc9
XUkp6ghERQML
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr