General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000560448
Gene ID:	ENSG00000160199
Gene Name:	PKNOX1
Sequence (UNICHARACTER ENCODING)	CCAGACACCAUUCGCUUUUCACCCAAGAUGAUUUGAUGUCUUAUAAAACUCUGAUGAACCAUGAUGGCUACACAGACAUUAAGUAUAGACAGCUAUCAAGAUGGGCAACAGAUGCAAGUAGUAACAGAGUUAAAGACAGAACAAGAUCCAAACUGCUCUGAACCCGAUGCAGAAGGAGUGAGCCCUCCCCCUGUGGAGUCUCAGACCCCGAUGGAUGUGGACAAGCAGGCCAUUUAUAGAUGGUAAAAGCAAUCCAGGUUUUGCGCAUUCAUCUUCUUGAGCUGGAAAAGGUUAACGAACUCUGCAAAGAUUUCUGCAGUCGAUACAUUGCUUGUCUGAAAACAAAAAUGAACAGUGAAACUCUGUUGAGUGGAGAGCCUGGAAGCCCGUACUCACCAGUGCAGUCCCAGCAGAUUCAAAGUGCCAUCACAGGCACCAUCAGCCCUCAGGGAAUUGUGGUGCCGGCGUCCGCGCUGCAGCAGGGAAACGUAGCCAUGGCGACGGUGGCAGGUGGCACAGUGUAUCAGCCUGUCACGGUCGUCACUCCCCAAGGCCAAGUGGUCACACAGACAUUGUCGCCUGGGACAAUUAGGAUCCAGAACUCCCAGCUUCAGUUACAGUUAAACCAAGAUCUCAGCAUCUUGCAUCAAGAUGAUGGUUCAUCUAAGAACAAGAGGGGCGUCCUGCCAAAGCAUGCCACGAACGUGAUGCGGUCCUGGCUCUUCCAGCACAUCGGGCAPCCCUACCCAACAGAGGAUGAGAAAAAACAGAUUGCUGCUCAGACAAAUUUGACACUACUCCAAGUCAACAACUGGUUCAUCAAUGCCAGAAGACGAAUUCUUCAGCCAAUGUUGGAUUCAAGUUGUUCAGAGACCCCCAAAACAAAGAAAAAAACUGCUCAGAACCGGCCAGUUCAGAGGUUUUGGCCUGAUUCUAUUGCAUCAGGAGUCGCACAGCCACCGCCGAGCGAGCUCACCAUGUCGGAAGGAGCUGUUGUCACCAUCACCACGCCCGUGAACAUGAACGUGGACAGCCUUCAGUCUCUGUCCUCGGACGGGGCCACCCUGGCGGUGCAGCAGGUCAUGAUGGCAGGGCAGAGCGAGGACGAGUCUGUGGACAGCACAGAGGAGGAUGCGGGUGCCCUGGCCCCUGCCCACAUCAGCGGGCUGGUCUUGGAGAACAGUGЖCUCCCUGCAGUAGGGGCAGGAGCAGACGCACCUGЖCUUUUUGGAGUUUGCACAGCAAACAUUUUACACAGUUUUAUUUCUAAUAUGUUUUAUAUGUAGAUAUAGAAGAGUGCACUUUUGUAUUUCAUAGUAAGCUUAAAGCGCGUCUUUGCCGGUGCAGCGACUUCUUUCAAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGUGUGUGCGUGUGUGUGGAUUUUUAAAGAAAUUCUPU
Sequence (SHORT NAMES ENCODING)	CCAGACACCAUUCGCUUUUCACCCAAGAUGAUUUGAUGUCUUAUAAAACUCUGAUGAACCAUGAUGGCUACACAGACAUUAAGUAUAGACAGCUAUCAAGAUGGGCAACAGAUGCAAGUAGUAACAGAGUUAAAGACAGAACAAGAUCCAAACUGCUCUGAACCCGAUGCAGAAGGAGUGAGCCCUCCCCCUGUGGAGUCUCAGACCCCGAUGGAUGUGGACAAGCAGGCCAUUUAUAGAUGGUAAAAGCAAUCCAGGUUUUGCGCAUUCAUCUUCUUGAGCUGGAAAAGGUUAACGAACUCUGCAAAGAUUUCUGCAGUCGAUACAUUGCUUGUCUGAAAACAAAAAUGAACAGUGAAACUCUGUUGAGUGGAGAGCCUGGAAGCCCGUACUCACCAGUGCAGUCCCAGCAGAUUCAAAGUGCCAUCACAGGCACCAUCAGCCCUCAGGGAAUUGUGGUGCCGGCGUCCGCGCUGCAGCAGGGAAACGUAGCCAUGGCGACGGUGGCAGGUGGCACAGUGUAUCAGCCUGUCACGGUCGUCACUCCCCAAGGCCAAGUGGUCACACAGACAUUGUCGCCUGGGACAAUUAGGAUCCAGAACUCCCAGCUUCAGUUACAGUUAAACCAAGAUCUCAGCAUCUUGCAUCAAGAUGAUGGUUCAUCUAAGAACAAGAGGGGCGUCCUGCCAAAGCAUGCCACGAACGUGAUGCGGUCCUGGCUCUUCCAGCACAUCGGGCAYCCCUACCCAACAGAGGAUGAGAAAAAACAGAUUGCUGCUCAGACAAAUUUGACACUACUCCAAGUCAACAACUGGUUCAUCAAUGCCAGAAGACGAAUUCUUCAGCCAAUGUUGGAUUCAAGUUGUUCAGAGACCCCCAAAACAAAGAAAAAAACUGCUCAGAACCGGCCAGUUCAGAGGUUUUGGCCUGAUUCUAUUGCAUCAGGAGUCGCACAGCCACCGCCGAGCGAGCUCACCAUGUCGGAAGGAGCUGUUGUCACCAUCACCACGCCCGUGAACAUGAACGUGGACAGCCUUCAGUCUCUGUCCUCGGACGGGGCCACCCUGGCGGUGCAGCAGGUCAUGAUGGCAGGGCAGAGCGAGGACGAGUCUGUGGACAGCACAGAGGAGGAUGCGGGUGCCCUGGCCCCUGCCCACAUCAGCGGGCUGGUCUUGGAGAACAGUGm6ACUCCCUGCAGUAGGGGCAGGAGCAGACGCACCUGm6ACUUUUUGGAGUUUGCACAGCAAACAUUUUACACAGUUUUAUUUCUAAUAUGUUUUAUAUGUAGAUAUAGAAGAGUGCACUUUUGUAUUUCAUAGUAAGCUUAAAGCGCGUCUUUGCCGGUGCAGCGACUUCUUUCAAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGUGUGUGCGUGUGUGUGGAUUUUUAAAGAAAUUCUYU
Sequence (MODOMICS CODE ENCODING)	CCAGACACCAUUCGCUUUUCACCCAAGAUGAUUUGAUGUCUUAUAAAACUCUGAUGAACCAUGAUGGCUACACAGACAUUAAGUAUAGACAGCUAUCAAGAUGGGCAACAGAUGCAAGUAGUAACAGAGUUAAAGACAGAACAAGAUCCAAACUGCUCUGAACCCGAUGCAGAAGGAGUGAGCCCUCCCCCUGUGGAGUCUCAGACCCCGAUGGAUGUGGACAAGCAGGCCAUUUAUAGAUGGUAAAAGCAAUCCAGGUUUUGCGCAUUCAUCUUCUUGAGCUGGAAAAGGUUAACGAACUCUGCAAAGAUUUCUGCAGUCGAUACAUUGCUUGUCUGAAAACAAAAAUGAACAGUGAAACUCUGUUGAGUGGAGAGCCUGGAAGCCCGUACUCACCAGUGCAGUCCCAGCAGAUUCAAAGUGCCAUCACAGGCACCAUCAGCCCUCAGGGAAUUGUGGUGCCGGCGUCCGCGCUGCAGCAGGGAAACGUAGCCAUGGCGACGGUGGCAGGUGGCACAGUGUAUCAGCCUGUCACGGUCGUCACUCCCCAAGGCCAAGUGGUCACACAGACAUUGUCGCCUGGGACAAUUAGGAUCCAGAACUCCCAGCUUCAGUUACAGUUAAACCAAGAUCUCAGCAUCUUGCAUCAAGAUGAUGGUUCAUCUAAGAACAAGAGGGGCGUCCUGCCAAAGCAUGCCACGAACGUGAUGCGGUCCUGGCUCUUCCAGCACAUCGGGCA2000000009UCCCUACCCAACAGAGGAUGAGAAAAAACAGAUUGCUGCUCAGACAAAUUUGACACUACUCCAAGUCAACAACUGGUUCAUCAAUGCCAGAAGACGAAUUCUUCAGCCAAUGUUGGAUUCAAGUUGUUCAGAGACCCCCAAAACAAAGAAAAAAACUGCUCAGAACCGGCCAGUUCAGAGGUUUUGGCCUGAUUCUAUUGCAUCAGGAGUCGCACAGCCACCGCCGAGCGAGCUCACCAUGUCGGAAGGAGCUGUUGUCACCAUCACCACGCCCGUGAACAUGAACGUGGACAGCCUUCAGUCUCUGUCCUCGGACGGGGCCACCCUGGCGGUGCAGCAGGUCAUGAUGGCAGGGCAGAGCGAGGACGAGUCUGUGGACAGCACAGAGGAGGAUGCGGGUGCCCUGGCCCCUGCCCACAUCAGCGGGCUGGUCUUGGAGAACAGUG2000000006ACUCCCUGCAGUAGGGGCAGGAGCAGACGCACCUG2000000006ACUUUUUGGAGUUUGCACAGCAAACAUUUUACACAGUUUUAUUUCUAAUAUGUUUUAUAUGUAGAUAUAGAAGAGUGCACUUUUGUAUUUCAUAGUAAGCUUAAAGCGCGUCUUUGCCGGUGCAGCGACUUCUUUCAAGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGUGUGUGCGUGUGUGUGGAUUUUUAAAGAAAUUCU2000000009UU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	740	1186	1221	1428
Modification Positions	Y	m6A	m6A	Y
Genomic Coordinates	21:43024873:+	21:43030088:+	21:43030123:+	21:43030330:+
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 XUkp6ghERQML BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8