Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000478183
Gene ID: ENSG00000159140
Gene Name: SON
Sequence (UNICHARACTER ENCODING) AGAACAUAAAAACCUAAAAUUUAGUAACAAGGGGAAAAUAAAGCAUGAUUUGGAGAUAUGUUUCAAAUUUUUAAAAAAUGACCAUAAAGAUCAACAGUACAACUUAAUACUGUUUGCUAUAUGUACAUGGAUGCCCUUUAAUAAGAGGCAUUGAAUAUUUCUUAACCUGUAAAAAUAACUGUUGACCAUGCUAAUGUAUAUAUACUUGUGCAUCUUAGGACAUUAAGUGGUUUGCUGCUUUGAUGGAAAUUAUGGUUCAGUGGGUUGGAUACAAGAGAGAUGACUGUUCACAGAAUAACCUGUGAACUUUCACCCCUCUGUAUGGAAACUUGUUUCAGGGCCAAAUCCUUGUAGCUGUCUUCUUGCCCCGGUCAGUGCCAGCCGUACUAUUCACAACACUGCUGCUACCGAGGCCUAGGAUCAGUUCUUAAGAGCAGCCCCGGUAЖCUGGAGGAAUGGGAGCCGUUUUGAUGAGAAAAAUGGGCUGGAGAGAAGGAGAAGGAUUAGGAAAAAACAAAGAAGGCAAUAAGGAACCCAPCCUAGUUGAUUUUAAGACAGACCGAAAAGGUCUUGUUGCAGUAGGAGAAAGAGCACAAAAGAGGUCUGGGAACUUCUCUGCUGCAAUGAAAGAUCUGUCAGGCAAЖCAPCCUGUGUCUGCUUUGAUGGAGAUCUGUAAUAAAAGAAGGUGGCAACCACCUGAAUUUCUAUUGGUCCAUGAUAGUGGCCCUGAUCAUCGCAAACAUUUUCUCUPUAGGGUAUUGAUAAAUGGAAGCGCUUACCAGCCCAGCUUUGCCAGCCCUAAUAAGAAGCAUGCUAAAGCCACAGCAGCUACUGUGGUUCUUCAAGCAAUGGGCCUUGUACCAAAGGЖCCUCAUGGCUAAUGCCACUUGCUUCAGGAGUGCCUCACGUAGAUAGAUUGAGGUUUUAUAAUAAUCAUUUCAGAAUUUUACUCUGCAUCACAAUGUAUUUCCUCUPUAAUGUUGUAAAUAUUUGGCAAUUUAAGЖCAUUGUGUAAAAAGCAAUCUGUAAAAACAUCUCCAGGCUUUGAUUUUUGUACCAUGGAAAUUGUAUUUAACCAUACAGGGUUUUGGUAUGUUUAUAUUGUUUACCUUAGUGAUGUAUUUGUUUAAGUGGCUAЖCAPCCAAACGACUGUUUGAAGGCAUCAGAGUAAUCUUCAGUGUGGAAUGUUAAAUAACGCUUUUAUACUGUAUUUUGUACUAUGAUGUAACUCCCCUUCCUUAUGGCUAGGCUACUGUAЖCACUUGCCUGUAAUCAGUGAAGGGCUGUGCACCUUGUACUAUUUCACAAUGGGUUCUGCUGGACAGAUAAUGGGCCAGUGUUAUUGAGGUGAUCAAGAUCUGUUCCACAGGGCUAAUGCCACCAUCUCCCCUCAAAAUUUUGUAGAGGUUCUAAAAAGAAAGUGGUAUGUUGUGUGAUGAUCAGCACUAAGUCCUGCAUUCCUGUUAAAGCCACUUGGGUCAPAAGAAGGGAGUAAAAAAUGAAGUCUGACUAGAAUUCUAUUGCAGAGGCCAGUACAUUUAGUAUGGCAUUGAGUUGUGAUAUAGUUUUACUUUGAUGUGCAUUUUGAAUUUCAGCUACACCUAGAUAGACGUAAAAUGAUAAUUAAAAUGCUGUAACCAACUUAUCUAAUAAAAUUGGCAACCAGCCACUAUUUUGUUGACUAUGAGAAAGUUAAAAGUUUAUGUUAAUUUUUAGGGUCUGAUAGAAUAUUUCAUGUGUAUUACAGUGGUAUUCAUAUGCUAUGUCUCUAAACUPUAUUUUCAAAAGCUUAAGGCCCAAAUACAAACUUCUCUGGAAUAAA
Sequence (SHORT NAMES ENCODING) AGAACAUAAAAACCUAAAAUUUAGUAACAAGGGGAAAAUAAAGCAUGAUUUGGAGAUAUGUUUCAAAUUUUUAAAAAAUGACCAUAAAGAUCAACAGUACAACUUAAUACUGUUUGCUAUAUGUACAUGGAUGCCCUUUAAUAAGAGGCAUUGAAUAUUUCUUAACCUGUAAAAAUAACUGUUGACCAUGCUAAUGUAUAUAUACUUGUGCAUCUUAGGACAUUAAGUGGUUUGCUGCUUUGAUGGAAAUUAUGGUUCAGUGGGUUGGAUACAAGAGAGAUGACUGUUCACAGAAUAACCUGUGAACUUUCACCCCUCUGUAUGGAAACUUGUUUCAGGGCCAAAUCCUUGUAGCUGUCUUCUUGCCCCGGUCAGUGCCAGCCGUACUAUUCACAACACUGCUGCUACCGAGGCCUAGGAUCAGUUCUUAAGAGCAGCCCCGGUAm6ACUGGAGGAAUGGGAGCCGUUUUGAUGAGAAAAAUGGGCUGGAGAGAAGGAGAAGGAUUAGGAAAAAACAAAGAAGGCAAUAAGGAACCCAYCCUAGUUGAUUUUAAGACAGACCGAAAAGGUCUUGUUGCAGUAGGAGAAAGAGCACAAAAGAGGUCUGGGAACUUCUCUGCUGCAAUGAAAGAUCUGUCAGGCAAm6ACAYCCUGUGUCUGCUUUGAUGGAGAUCUGUAAUAAAAGAAGGUGGCAACCACCUGAAUUUCUAUUGGUCCAUGAUAGUGGCCCUGAUCAUCGCAAACAUUUUCUCUYUAGGGUAUUGAUAAAUGGAAGCGCUUACCAGCCCAGCUUUGCCAGCCCUAAUAAGAAGCAUGCUAAAGCCACAGCAGCUACUGUGGUUCUUCAAGCAAUGGGCCUUGUACCAAAGGm6ACCUCAUGGCUAAUGCCACUUGCUUCAGGAGUGCCUCACGUAGAUAGAUUGAGGUUUUAUAAUAAUCAUUUCAGAAUUUUACUCUGCAUCACAAUGUAUUUCCUCUYUAAUGUUGUAAAUAUUUGGCAAUUUAAGm6ACAUUGUGUAAAAAGCAAUCUGUAAAAACAUCUCCAGGCUUUGAUUUUUGUACCAUGGAAAUUGUAUUUAACCAUACAGGGUUUUGGUAUGUUUAUAUUGUUUACCUUAGUGAUGUAUUUGUUUAAGUGGCUAm6ACAYCCAAACGACUGUUUGAAGGCAUCAGAGUAAUCUUCAGUGUGGAAUGUUAAAUAACGCUUUUAUACUGUAUUUUGUACUAUGAUGUAACUCCCCUUCCUUAUGGCUAGGCUACUGUAm6ACACUUGCCUGUAAUCAGUGAAGGGCUGUGCACCUUGUACUAUUUCACAAUGGGUUCUGCUGGACAGAUAAUGGGCCAGUGUUAUUGAGGUGAUCAAGAUCUGUUCCACAGGGCUAAUGCCACCAUCUCCCCUCAAAAUUUUGUAGAGGUUCUAAAAAGAAAGUGGUAUGUUGUGUGAUGAUCAGCACUAAGUCCUGCAUUCCUGUUAAAGCCACUUGGGUCAYAAGAAGGGAGUAAAAAAUGAAGUCUGACUAGAAUUCUAUUGCAGAGGCCAGUACAUUUAGUAUGGCAUUGAGUUGUGAUAUAGUUUUACUUUGAUGUGCAUUUUGAAUUUCAGCUACACCUAGAUAGACGUAAAAUGAUAAUUAAAAUGCUGUAACCAACUUAUCUAAUAAAAUUGGCAACCAGCCACUAUUUUGUUGACUAUGAGAAAGUUAAAAGUUUAUGUUAAUUUUUAGGGUCUGAUAGAAUAUUUCAUGUGUAUUACAGUGGUAUUCAUAUGCUAUGUCUCUAAACUYUAUUUUCAAAAGCUUAAGGCCCAAAUACAAACUUCUCUGGAAUAAA
Sequence (MODOMICS CODE ENCODING) AGAACAUAAAAACCUAAAAUUUAGUAACAAGGGGAAAAUAAAGCAUGAUUUGGAGAUAUGUUUCAAAUUUUUAAAAAAUGACCAUAAAGAUCAACAGUACAACUUAAUACUGUUUGCUAUAUGUACAUGGAUGCCCUUUAAUAAGAGGCAUUGAAUAUUUCUUAACCUGUAAAAAUAACUGUUGACCAUGCUAAUGUAUAUAUACUUGUGCAUCUUAGGACAUUAAGUGGUUUGCUGCUUUGAUGGAAAUUAUGGUUCAGUGGGUUGGAUACAAGAGAGAUGACUGUUCACAGAAUAACCUGUGAACUUUCACCCCUCUGUAUGGAAACUUGUUUCAGGGCCAAAUCCUUGUAGCUGUCUUCUUGCCCCGGUCAGUGCCAGCCGUACUAUUCACAACACUGCUGCUACCGAGGCCUAGGAUCAGUUCUUAAGAGCAGCCCCGGUA2000000006ACUGGAGGAAUGGGAGCCGUUUUGAUGAGAAAAAUGGGCUGGAGAGAAGGAGAAGGAUUAGGAAAAAACAAAGAAGGCAAUAAGGAACCCA2000000009UCCUAGUUGAUUUUAAGACAGACCGAAAAGGUCUUGUUGCAGUAGGAGAAAGAGCACAAAAGAGGUCUGGGAACUUCUCUGCUGCAAUGAAAGAUCUGUCAGGCAA2000000006ACA2000000009UCCUGUGUCUGCUUUGAUGGAGAUCUGUAAUAAAAGAAGGUGGCAACCACCUGAAUUUCUAUUGGUCCAUGAUAGUGGCCCUGAUCAUCGCAAACAUUUUCUCU2000000009UUAGGGUAUUGAUAAAUGGAAGCGCUUACCAGCCCAGCUUUGCCAGCCCUAAUAAGAAGCAUGCUAAAGCCACAGCAGCUACUGUGGUUCUUCAAGCAAUGGGCCUUGUACCAAAGG2000000006ACCUCAUGGCUAAUGCCACUUGCUUCAGGAGUGCCUCACGUAGAUAGAUUGAGGUUUUAUAAUAAUCAUUUCAGAAUUUUACUCUGCAUCACAAUGUAUUUCCUCU2000000009UUAAUGUUGUAAAUAUUUGGCAAUUUAAG2000000006ACAUUGUGUAAAAAGCAAUCUGUAAAAACAUCUCCAGGCUUUGAUUUUUGUACCAUGGAAAUUGUAUUUAACCAUACAGGGUUUUGGUAUGUUUAUAUUGUUUACCUUAGUGAUGUAUUUGUUUAAGUGGCUA2000000006ACA2000000009UCCAAACGACUGUUUGAAGGCAUCAGAGUAAUCUUCAGUGUGGAAUGUUAAAUAACGCUUUUAUACUGUAUUUUGUACUAUGAUGUAACUCCCCUUCCUUAUGGCUAGGCUACUGUA2000000006ACACUUGCCUGUAAUCAGUGAAGGGCUGUGCACCUUGUACUAUUUCACAAUGGGUUCUGCUGGACAGAUAAUGGGCCAGUGUUAUUGAGGUGAUCAAGAUCUGUUCCACAGGGCUAAUGCCACCAUCUCCCCUCAAAAUUUUGUAGAGGUUCUAAAAAGAAAGUGGUAUGUUGUGUGAUGAUCAGCACUAAGUCCUGCAUUCCUGUUAAAGCCACUUGGGUCA2000000009UAAGAAGGGAGUAAAAAAUGAAGUCUGACUAGAAUUCUAUUGCAGAGGCCAGUACAUUUAGUAUGGCAUUGAGUUGUGAUAUAGUUUUACUUUGAUGUGCAUUUUGAAUUUCAGCUACACCUAGAUAGACGUAAAAUGAUAAUUAAAAUGCUGUAACCAACUUAUCUAAUAAAAUUGGCAACCAGCCACUAUUUUGUUGACUAUGAGAAAGUUAAAAGUUUAUGUUAAUUUUUAGGGUCUGAUAGAAUAUUUCAUGUGUAUUACAGUGGUAUUCAUAUGCUAUGUCUCUAAACU2000000009UUAUUUUCAAAAGCUUAAGGCCCAAAUACAAACUUCUCUGGAAUAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 446 537 643 646 750 867 973 1002 1135 1138 1255 1478 1772
Modification Positions m6A Y m6A Y Y m6A Y m6A m6A Y m6A Y Y
Genomic Coordinates 21:33573335:+ 21:33573426:+ 21:33575782:+ 21:33575785:+ 21:33575889:+ 21:33576530:+ 21:33576636:+ 21:33576665:+ 21:33576798:+ 21:33576801:+ 21:33576918:+ 21:33577141:+ 21:33577435:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
ArijeGVTwYBw
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
8cMbzB4aD5Se
ArijeGVTwYBw
nfCHyrYzE6fB
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
CxQaH6qDB9bC
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8