Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000660377
Gene ID: ENSG00000183250
Gene Name: LINC01547
Sequence (UNICHARACTER ENCODING) ACCCGGAAGCGGCUCGGGCGGGCGCAGGGUCGCGGGUGUAGGGUGGCGGCGCUCCGCCUUUCACCGACGCACCUGGGAGAAACAGACCGGAGGACGCGGGUGGCGCGGAGCACGAGAAACAACGAGUUUCUGUCUAGAUCGUGGGGGACCCAAGCCCGGGGUUGCGUCCAAGGUCGGGGAUGGAGAGGACGCGACCCCCGCGGCAGUCGAGAUGGCCUUUUUAAAAUUCUAUAUUUGAGAAGGAGUCUCGCGCUGUCGCCCAGGCUGGAGCGCAAUGGCGCGAAAUCGGCUCAUUGCAGCCUCGACGUCCAGGЖCUCGAGCGAUCCUCCCGCCUCAGCCUCUCGAGAAGGAGUGGCCAGAAGGCUCCUCUCCAGGCCUCACAGAGGGAAACACUGGUCUAGUGAGAGACCUGCGUCCUGCCCAUCAGGACCGAAGCGGCACGCGUGAGGAUCCUGCAGGCCAAGAGACAACAGCGAUUACAAACCCCAGUCCCAGCCUUGCAGCUGACCUUGCAGGUGACGCCCUGCCUGGGUGUCUCGGUGCAGCUGCACAUCAGGGGCCUCUGCUGGACAGAAGCUCUGAGUCCACACUUGGCCCCCAGGCGCUGGAGCUGGAGCACUGCCACGAGAGGGGAUGCUGCCGUGGCUGCGCCAGCUUCAGCCCUUUCCCUGCACCGAGAUGUCCCAGUGAGCGGCUGGGUGCUCACAGUUCCCGUUGGGCCAUCAGAGGAAGAUCAAAGAUCAACCCUCCCCCAUGGGCUCCUGCCUGCCUGCCAGGUGGGUUUCCUGCCUGUCUCCCAGCCCCCAAGAGCUCCACGGЖCUCUGCCAGUAGCUGCUUUAAAGGAGGGAGGGAGUUUUCUGAUCCUCUGGЖCAUCCCUGGGGCUGGAGCUAUGGGCUGAGCCAUAGGAGAGCCAGCCCAGCUCCCUGGGGGUUGGGGGCUGUGUCUCUCCAUCCCUUAGUAAAAAUACAGCAACUCCCAACUCAAAGUCAAGGGUCAAUAGUCACAAAACCUUGGUGCAGCCUGGAACAGGCAUAGAGGUCUCAGCAGAGCUGCCCAAGGACAAGACCUAAGAUCCAGCAGGGAACUAUGUAGUCACCCCGAGAGGCCCAGCUCUCUCCGUGAGCUCUGGGCCUAGGGUGGGGGUGGUUGUUGGUUCUGCGCGCACUGUUCCCCCUACAUGAUGGGUCCAUCCCAGUUGGCUUCUCUCACUCGCUUCCUCCUGUGGAGAAGCCUGUCCAGGUGUCACUGCCUCCAGGAAGCUGUCUCUGAUUUCUCCAGUUGAACAGUGAGAUUUGCCACACCUCACAUGCAUCGCUCUUGUCCCUGGAAUUGUAACCAUAGGUUUUCCUGUCUCCUGGAGGACAAGGAUGAGGGCUUUCCACUUGAGUCUCCCUGGUGGAGCCCAGCUCCUGACAUACCUGGUAAAAGUUCUCAAGAGAAGAACAUGGAGGAGGAAUGUGGAUAACAACCCUGGCUGCCUGUGUGUUCCAAGCUAGGAAGAUGUAAUGUCCCCACAAACGGGGUAAAUGGCUUGCCUGCGUCACAGCUGUCUCAAGCCCAGGCCCUGGGUGCCAGCCCAAGCCCAAGGЖCUAGGUCCAGAGCCACACAGCGCCAGGCCACAUCCGCCUCACCUGGGЖCCUUUUGUGGGGUACAGUCUCCGGCCCCACCCAGACCUGCUGAAGGAGAGACCCCAUGGCAAGGЖCUCAGCCACCUGCAGUUUCAUAAGCCCCCAGUGGGUUCCUAGGCAUGAAGACCACCGGUUAGAGGCUGAЖCUGGCAGGAACCUGUCUCCAGCCCCUUCUCACCCCAGCCGGGCCCUGCCUCAGAGGCAGCACCCAGGЖCGUGGCCAUGACCCGUGGЖCUCCACUCAAUCCCUCUUCUCCAGGAGCCAUGCAAAGUGUCAGCCAGCCAGGCCCCUGGAAGGCAGUCAUCACCUCUUAAGGCAUUGCGGGUGUCGGUCCUGCAACUGCCAGGUGCAGCACACGACCCAUGUCCGGUGUUCGAUAGCAGGGAGCCAUGACCUGGCAACGAUUCCACGCUCAAAGGGGCACCCGGGGGGCCCUGGGUCGGGGCGGAUCAGCUUUCCCUGGGCACAUCUGCCUCAUUCCAGAUCUCCAGGGCUCAUGUCUGUGACAGGGAGGGAAGGCUCUGCCCUGGCCUUCCGUCAGCUCUGCCAGUGCAGGCUGGGCAGCCUGGGCUUUAGAGCUGGCUUCUGCCCACACUUUCUCCGUGAAAGGAAAACAACUAUGAGUCUGCCAAACGCAUCUCAGAUGCGUUUUAAAAAAUUCUGGUCCCCGCUCUCUGUCCCAUCAUCUGCCUCGGGGЖCUUCCUCUCUCCGUGGUUCUCACCCCAUACUCUGUCACUGCCACAUUUUCACCUGGGCCUGGCCUUUGUCUCCACCUGAA
Sequence (SHORT NAMES ENCODING) ACCCGGAAGCGGCUCGGGCGGGCGCAGGGUCGCGGGUGUAGGGUGGCGGCGCUCCGCCUUUCACCGACGCACCUGGGAGAAACAGACCGGAGGACGCGGGUGGCGCGGAGCACGAGAAACAACGAGUUUCUGUCUAGAUCGUGGGGGACCCAAGCCCGGGGUUGCGUCCAAGGUCGGGGAUGGAGAGGACGCGACCCCCGCGGCAGUCGAGAUGGCCUUUUUAAAAUUCUAUAUUUGAGAAGGAGUCUCGCGCUGUCGCCCAGGCUGGAGCGCAAUGGCGCGAAAUCGGCUCAUUGCAGCCUCGACGUCCAGGm6ACUCGAGCGAUCCUCCCGCCUCAGCCUCUCGAGAAGGAGUGGCCAGAAGGCUCCUCUCCAGGCCUCACAGAGGGAAACACUGGUCUAGUGAGAGACCUGCGUCCUGCCCAUCAGGACCGAAGCGGCACGCGUGAGGAUCCUGCAGGCCAAGAGACAACAGCGAUUACAAACCCCAGUCCCAGCCUUGCAGCUGACCUUGCAGGUGACGCCCUGCCUGGGUGUCUCGGUGCAGCUGCACAUCAGGGGCCUCUGCUGGACAGAAGCUCUGAGUCCACACUUGGCCCCCAGGCGCUGGAGCUGGAGCACUGCCACGAGAGGGGAUGCUGCCGUGGCUGCGCCAGCUUCAGCCCUUUCCCUGCACCGAGAUGUCCCAGUGAGCGGCUGGGUGCUCACAGUUCCCGUUGGGCCAUCAGAGGAAGAUCAAAGAUCAACCCUCCCCCAUGGGCUCCUGCCUGCCUGCCAGGUGGGUUUCCUGCCUGUCUCCCAGCCCCCAAGAGCUCCACGGm6ACUCUGCCAGUAGCUGCUUUAAAGGAGGGAGGGAGUUUUCUGAUCCUCUGGm6ACAUCCCUGGGGCUGGAGCUAUGGGCUGAGCCAUAGGAGAGCCAGCCCAGCUCCCUGGGGGUUGGGGGCUGUGUCUCUCCAUCCCUUAGUAAAAAUACAGCAACUCCCAACUCAAAGUCAAGGGUCAAUAGUCACAAAACCUUGGUGCAGCCUGGAACAGGCAUAGAGGUCUCAGCAGAGCUGCCCAAGGACAAGACCUAAGAUCCAGCAGGGAACUAUGUAGUCACCCCGAGAGGCCCAGCUCUCUCCGUGAGCUCUGGGCCUAGGGUGGGGGUGGUUGUUGGUUCUGCGCGCACUGUUCCCCCUACAUGAUGGGUCCAUCCCAGUUGGCUUCUCUCACUCGCUUCCUCCUGUGGAGAAGCCUGUCCAGGUGUCACUGCCUCCAGGAAGCUGUCUCUGAUUUCUCCAGUUGAACAGUGAGAUUUGCCACACCUCACAUGCAUCGCUCUUGUCCCUGGAAUUGUAACCAUAGGUUUUCCUGUCUCCUGGAGGACAAGGAUGAGGGCUUUCCACUUGAGUCUCCCUGGUGGAGCCCAGCUCCUGACAUACCUGGUAAAAGUUCUCAAGAGAAGAACAUGGAGGAGGAAUGUGGAUAACAACCCUGGCUGCCUGUGUGUUCCAAGCUAGGAAGAUGUAAUGUCCCCACAAACGGGGUAAAUGGCUUGCCUGCGUCACAGCUGUCUCAAGCCCAGGCCCUGGGUGCCAGCCCAAGCCCAAGGm6ACUAGGUCCAGAGCCACACAGCGCCAGGCCACAUCCGCCUCACCUGGGm6ACCUUUUGUGGGGUACAGUCUCCGGCCCCACCCAGACCUGCUGAAGGAGAGACCCCAUGGCAAGGm6ACUCAGCCACCUGCAGUUUCAUAAGCCCCCAGUGGGUUCCUAGGCAUGAAGACCACCGGUUAGAGGCUGAm6ACUGGCAGGAACCUGUCUCCAGCCCCUUCUCACCCCAGCCGGGCCCUGCCUCAGAGGCAGCACCCAGGm6ACGUGGCCAUGACCCGUGGm6ACUCCACUCAAUCCCUCUUCUCCAGGAGCCAUGCAAAGUGUCAGCCAGCCAGGCCCCUGGAAGGCAGUCAUCACCUCUUAAGGCAUUGCGGGUGUCGGUCCUGCAACUGCCAGGUGCAGCACACGACCCAUGUCCGGUGUUCGAUAGCAGGGAGCCAUGACCUGGCAACGAUUCCACGCUCAAAGGGGCACCCGGGGGGCCCUGGGUCGGGGCGGAUCAGCUUUCCCUGGGCACAUCUGCCUCAUUCCAGAUCUCCAGGGCUCAUGUCUGUGACAGGGAGGGAAGGCUCUGCCCUGGCCUUCCGUCAGCUCUGCCAGUGCAGGCUGGGCAGCCUGGGCUUUAGAGCUGGCUUCUGCCCACACUUUCUCCGUGAAAGGAAAACAACUAUGAGUCUGCCAAACGCAUCUCAGAUGCGUUUUAAAAAAUUCUGGUCCCCGCUCUCUGUCCCAUCAUCUGCCUCGGGGm6ACUUCCUCUCUCCGUGGUUCUCACCCCAUACUCUGUCACUGCCACAUUUUCACCUGGGCCUGGCCUUUGUCUCCACCUGAA
Sequence (MODOMICS CODE ENCODING) ACCCGGAAGCGGCUCGGGCGGGCGCAGGGUCGCGGGUGUAGGGUGGCGGCGCUCCGCCUUUCACCGACGCACCUGGGAGAAACAGACCGGAGGACGCGGGUGGCGCGGAGCACGAGAAACAACGAGUUUCUGUCUAGAUCGUGGGGGACCCAAGCCCGGGGUUGCGUCCAAGGUCGGGGAUGGAGAGGACGCGACCCCCGCGGCAGUCGAGAUGGCCUUUUUAAAAUUCUAUAUUUGAGAAGGAGUCUCGCGCUGUCGCCCAGGCUGGAGCGCAAUGGCGCGAAAUCGGCUCAUUGCAGCCUCGACGUCCAGG2000000006ACUCGAGCGAUCCUCCCGCCUCAGCCUCUCGAGAAGGAGUGGCCAGAAGGCUCCUCUCCAGGCCUCACAGAGGGAAACACUGGUCUAGUGAGAGACCUGCGUCCUGCCCAUCAGGACCGAAGCGGCACGCGUGAGGAUCCUGCAGGCCAAGAGACAACAGCGAUUACAAACCCCAGUCCCAGCCUUGCAGCUGACCUUGCAGGUGACGCCCUGCCUGGGUGUCUCGGUGCAGCUGCACAUCAGGGGCCUCUGCUGGACAGAAGCUCUGAGUCCACACUUGGCCCCCAGGCGCUGGAGCUGGAGCACUGCCACGAGAGGGGAUGCUGCCGUGGCUGCGCCAGCUUCAGCCCUUUCCCUGCACCGAGAUGUCCCAGUGAGCGGCUGGGUGCUCACAGUUCCCGUUGGGCCAUCAGAGGAAGAUCAAAGAUCAACCCUCCCCCAUGGGCUCCUGCCUGCCUGCCAGGUGGGUUUCCUGCCUGUCUCCCAGCCCCCAAGAGCUCCACGG2000000006ACUCUGCCAGUAGCUGCUUUAAAGGAGGGAGGGAGUUUUCUGAUCCUCUGG2000000006ACAUCCCUGGGGCUGGAGCUAUGGGCUGAGCCAUAGGAGAGCCAGCCCAGCUCCCUGGGGGUUGGGGGCUGUGUCUCUCCAUCCCUUAGUAAAAAUACAGCAACUCCCAACUCAAAGUCAAGGGUCAAUAGUCACAAAACCUUGGUGCAGCCUGGAACAGGCAUAGAGGUCUCAGCAGAGCUGCCCAAGGACAAGACCUAAGAUCCAGCAGGGAACUAUGUAGUCACCCCGAGAGGCCCAGCUCUCUCCGUGAGCUCUGGGCCUAGGGUGGGGGUGGUUGUUGGUUCUGCGCGCACUGUUCCCCCUACAUGAUGGGUCCAUCCCAGUUGGCUUCUCUCACUCGCUUCCUCCUGUGGAGAAGCCUGUCCAGGUGUCACUGCCUCCAGGAAGCUGUCUCUGAUUUCUCCAGUUGAACAGUGAGAUUUGCCACACCUCACAUGCAUCGCUCUUGUCCCUGGAAUUGUAACCAUAGGUUUUCCUGUCUCCUGGAGGACAAGGAUGAGGGCUUUCCACUUGAGUCUCCCUGGUGGAGCCCAGCUCCUGACAUACCUGGUAAAAGUUCUCAAGAGAAGAACAUGGAGGAGGAAUGUGGAUAACAACCCUGGCUGCCUGUGUGUUCCAAGCUAGGAAGAUGUAAUGUCCCCACAAACGGGGUAAAUGGCUUGCCUGCGUCACAGCUGUCUCAAGCCCAGGCCCUGGGUGCCAGCCCAAGCCCAAGG2000000006ACUAGGUCCAGAGCCACACAGCGCCAGGCCACAUCCGCCUCACCUGGG2000000006ACCUUUUGUGGGGUACAGUCUCCGGCCCCACCCAGACCUGCUGAAGGAGAGACCCCAUGGCAAGG2000000006ACUCAGCCACCUGCAGUUUCAUAAGCCCCCAGUGGGUUCCUAGGCAUGAAGACCACCGGUUAGAGGCUGA2000000006ACUGGCAGGAACCUGUCUCCAGCCCCUUCUCACCCCAGCCGGGCCCUGCCUCAGAGGCAGCACCCAGG2000000006ACGUGGCCAUGACCCGUGG2000000006ACUCCACUCAAUCCCUCUUCUCCAGGAGCCAUGCAAAGUGUCAGCCAGCCAGGCCCCUGGAAGGCAGUCAUCACCUCUUAAGGCAUUGCGGGUGUCGGUCCUGCAACUGCCAGGUGCAGCACACGACCCAUGUCCGGUGUUCGAUAGCAGGGAGCCAUGACCUGGCAACGAUUCCACGCUCAAAGGGGCACCCGGGGGGCCCUGGGUCGGGGCGGAUCAGCUUUCCCUGGGCACAUCUGCCUCAUUCCAGAUCUCCAGGGCUCAUGUCUGUGACAGGGAGGGAAGGCUCUGCCCUGGCCUUCCGUCAGCUCUGCCAGUGCAGGCUGGGCAGCCUGGGCUUUAGAGCUGGCUUCUGCCCACACUUUCUCCGUGAAAGGAAAACAACUAUGAGUCUGCCAAACGCAUCUCAGAUGCGUUUUAAAAAAUUCUGGUCCCCGCUCUCUGUCCCAUCAUCUGCCUCGGGG2000000006ACUUCCUCUCUCCGUGGUUCUCACCCCAUACUCUGUCACUGCCACAUUUUCACCUGGGCCUGGCCUUUGUCUCCACCUGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 314 819 870 1589 1637 1702 1772 1840 1859 2323
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 21:44939628:- 21:44934891:- 21:44934840:- 21:44934121:- 21:44934073:- 21:44934008:- 21:44933938:- 21:44933870:- 21:44933851:- 21:44933387:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
Ap2q43bQLNek
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
Yfn77uLS5tv8
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
VL7zkHvkfkoB
VyCX26p5UBRL
BtsJQJ3DteUq
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
Ap2q43bQLNek
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
VyCX26p5UBRL
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
Ap2q43bQLNek
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
Q36pf44ZRvxu
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn