Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript Name: ENST00000707134
Gene Name: ENSG00000142192
Sequence (UNICHARACTER ENCODING) ACACGCUUUCAGGAGAGGAGCCGUGUGAUCAUUUGCCAGAGAAGGAUAGGCUGGUGGGUGCUGAGACCAGAAUCUUUAUAGCAGAAACUUGUGAAGCGUUCCAGCUGAAAGUCCAAUCUCUAAACCUCGUCACGUGUUCAAUAUGCUAAAGAAGUAUGUCCGCGCAGAACAGAAGGACAGACAGCACACCCUAAAGCAUUUCGAGCAUGUGCGCAUGGUGGAUCCCAAGAAAGCCGCUCAGAUCCGGUCCCAGGUUAUGACACACCPCCGUGUGAUUUAUGAGCGCAUGAAUCAGUCUCUCUCCCUGCUCUACAACGUGCCUGCAGUGGCCGAGGAGAUUCAGGAUGAAGUUGAUGAGCUGCUUCAGAAAGAGCAAAACUAUUCAGAUGACGUCUUGGCCAACAUGAUUAGUGAЖCCAAGGAUCAGUUACGGAAACGAUGCUCUCAUGCCAUCUUUGACCGAAACGAAAACCACCGUGGAGCUCCUUCCCGUGAAUGGAGAGUUCAGCCUGGACGAUCUCCAGCCGUGGCAUUCUUUUGGGGCUGACUCUGUGCCAGCCAACACAGAAAACGAAGUUGAGCCUGUUGAUGCCCGCCCUGCUGCCGACCGAGGACUGACCACUCGACCAGGUUCUGGGUUGACAAAUAUCAAGACGGAGGAGAUCUCUGAAGUGAAGAUGGAUGCAGAAUUCCGACAUGACUCAGGAUAUGAAGUUCAUCAUCAAAAAUUGGUGUUCUUUGCAGAAGAUGUGGGUUCAAACAAAGGUGCAAUCAUUGGACUCAUGGUGGGCGGUGUUGUCAUAGCGACAGUGAUCGUCAUCACCUUGGUGAUGCUGAAGAAGAAACAGUACЖCAPCCAUUCAUCAUGGUGUGGUGGAGGUUGACGCCGCUGUCACCCCAGAGGAGCGCCACCUGUCCAAGAUGCAGCAGAACGGCUACGAAAAUCCAACCUACAAGUUCUUUGAGCAGAUGCAGAACUAGACCCCCGCCACAGCAGCCUCUGAAGUUGGACAGCAAAACCAUUGCUUCACUACCCAUCGGUGUCCAUUUAUAGAAUAAUGUGGGAAGAAACAAACCCGUUUUAUGAUUUACUCAUUAUCGCCUUUUGACAGCUGUGCUGUAЖCACAAGUAGAUGCCUGAACUUGAAUUAAUCCACACAUCAGUAAUGUAUUCUAUCUCUCUPUACAUUUUGGUCUCUAUACUACAUUAUUAAUGGGUUUUGUGUACUGUAAAGAAUUUAGCUGUAUCAAACUAGUGCAUGAAUAGAUUCUCUCCUGAUUAUUUAUCACAUAGCCCCUUAGCCAGUUGUAUAUUAUUCUUGUGGUUUGUGACCCAAUUAAGUCCUACUPUACAUAUGCUPUAAGAAUCGAUGGGGGAUGCUUCAUGUGAACGUGGGAGUUCAGCUGCUUCUCUUGCCUAAGUAUUCCUUUCCUGAUCACUAUGCAUUUUAAAGUUAAЖCAUUUUUAAGUAUUUCAGAUGCUPUAGAGAGAUUUUUUUUCCAUGACUGCAUUUUACUGUACAGAUUGCUGCUUCUGCUAUAUUUGUGAUAUAGGAAUUAAGAGGAUACACACGUUUGUUUCUUCGUGCCUGUUUUAUGUGCACACAUUAGGCAUUGAGACUUCAAGCUUUUCUUUUUUUGUCCACGUAUCUUUGGGUCUUUGAUAAAGAAAAGAAUCCCUGUUCAUUGUAAGCACUUUUACGGGGCGGGUGGGGAGGGGUGCUCUGCUGGUCUUCAAUUACCAAGAAUUCUCCAAAACAAUUUUCUGCAGGAUGAUUGUACAGAAUCAUUGCUUAUGACAUGAUCGCUUUCUACACUGUAUUACAUAAAUAAAUUAAAUAAAAUAACCCCGGGCAAGACUUUUCUUUGЖAGGAUGACUACЖ#ACAUUAAAUAAUCGAAGUAAUUUUGGGUGGGGAGAAGAGGCAGAUUCAAUUUUCUPUAACCAGUCUGAAGUUUCAUUUAUGAUACAAAAGAAGAUGAAAAUGGAAGUGGCAAUAUAAGGGGAUGAGGAAGGCAUGCCUGGACAAACCCUUCUUUUAAGAUGUGUCUUCAAUUUGUAUAAAAUGGUGUUUUCAUGUAAAUAAAUACAUUCUU
Sequence (SHORT NAMES ENCODING) ACACGCUUUCAGGAGAGGAGCCGUGUGAUCAUUUGCCAGAGAAGGAUAGGCUGGUGGGUGCUGAGACCAGAAUCUUUAUAGCAGAAACUUGUGAAGCGUUCCAGCUGAAAGUCCAAUCUCUAAACCUCGUCACGUGUUCAAUAUGCUAAAGAAGUAUGUCCGCGCAGAACAGAAGGACAGACAGCACACCCUAAAGCAUUUCGAGCAUGUGCGCAUGGUGGAUCCCAAGAAAGCCGCUCAGAUCCGGUCCCAGGUUAUGACACACCYCCGUGUGAUUUAUGAGCGCAUGAAUCAGUCUCUCUCCCUGCUCUACAACGUGCCUGCAGUGGCCGAGGAGAUUCAGGAUGAAGUUGAUGAGCUGCUUCAGAAAGAGCAAAACUAUUCAGAUGACGUCUUGGCCAACAUGAUUAGUGAm6ACCAAGGAUCAGUUACGGAAACGAUGCUCUCAUGCCAUCUUUGACCGAAACGAAAACCACCGUGGAGCUCCUUCCCGUGAAUGGAGAGUUCAGCCUGGACGAUCUCCAGCCGUGGCAUUCUUUUGGGGCUGACUCUGUGCCAGCCAACACAGAAAACGAAGUUGAGCCUGUUGAUGCCCGCCCUGCUGCCGACCGAGGACUGACCACUCGACCAGGUUCUGGGUUGACAAAUAUCAAGACGGAGGAGAUCUCUGAAGUGAAGAUGGAUGCAGAAUUCCGACAUGACUCAGGAUAUGAAGUUCAUCAUCAAAAAUUGGUGUUCUUUGCAGAAGAUGUGGGUUCAAACAAAGGUGCAAUCAUUGGACUCAUGGUGGGCGGUGUUGUCAUAGCGACAGUGAUCGUCAUCACCUUGGUGAUGCUGAAGAAGAAACAGUACm6ACAYCCAUUCAUCAUGGUGUGGUGGAGGUUGACGCCGCUGUCACCCCAGAGGAGCGCCACCUGUCCAAGAUGCAGCAGAACGGCUACGAAAAUCCAACCUACAAGUUCUUUGAGCAGAUGCAGAACUAGACCCCCGCCACAGCAGCCUCUGAAGUUGGACAGCAAAACCAUUGCUUCACUACCCAUCGGUGUCCAUUUAUAGAAUAAUGUGGGAAGAAACAAACCCGUUUUAUGAUUUACUCAUUAUCGCCUUUUGACAGCUGUGCUGUAm6ACACAAGUAGAUGCCUGAACUUGAAUUAAUCCACACAUCAGUAAUGUAUUCUAUCUCUCUYUACAUUUUGGUCUCUAUACUACAUUAUUAAUGGGUUUUGUGUACUGUAAAGAAUUUAGCUGUAUCAAACUAGUGCAUGAAUAGAUUCUCUCCUGAUUAUUUAUCACAUAGCCCCUUAGCCAGUUGUAUAUUAUUCUUGUGGUUUGUGACCCAAUUAAGUCCUACUYUACAUAUGCUYUAAGAAUCGAUGGGGGAUGCUUCAUGUGAACGUGGGAGUUCAGCUGCUUCUCUUGCCUAAGUAUUCCUUUCCUGAUCACUAUGCAUUUUAAAGUUAAm6ACAUUUUUAAGUAUUUCAGAUGCUYUAGAGAGAUUUUUUUUCCAUGACUGCAUUUUACUGUACAGAUUGCUGCUUCUGCUAUAUUUGUGAUAUAGGAAUUAAGAGGAUACACACGUUUGUUUCUUCGUGCCUGUUUUAUGUGCACACAUUAGGCAUUGAGACUUCAAGCUUUUCUUUUUUUGUCCACGUAUCUUUGGGUCUUUGAUAAAGAAAAGAAUCCCUGUUCAUUGUAAGCACUUUUACGGGGCGGGUGGGGAGGGGUGCUCUGCUGGUCUUCAAUUACCAAGAAUUCUCCAAAACAAUUUUCUGCAGGAUGAUUGUACAGAAUCAUUGCUUAUGACAUGAUCGCUUUCUACACUGUAUUACAUAAAUAAAUUAAAUAAAAUAACCCCGGGCAAGACUUUUCUUUGm6AAGGAUGACUACm6AGmACAUUAAAUAAUCGAAGUAAUUUUGGGUGGGGAGAAGAGGCAGAUUCAAUUUUCUYUAACCAGUCUGAAGUUUCAUUUAUGAUACAAAAGAAGAUGAAAAUGGAAGUGGCAAUAUAAGGGGAUGAGGAAGGCAUGCCUGGACAAACCCUUCUUUUAAGAUGUGUCUUCAAUUUGUAUAAAAUGGUGUUUUCAUGUAAAUAAAUACAUUCUU
Sequence (MODOMICS CODE ENCODING) ACACGCUUUCAGGAGAGGAGCCGUGUGAUCAUUUGCCAGAGAAGGAUAGGCUGGUGGGUGCUGAGACCAGAAUCUUUAUAGCAGAAACUUGUGAAGCGUUCCAGCUGAAAGUCCAAUCUCUAAACCUCGUCACGUGUUCAAUAUGCUAAAGAAGUAUGUCCGCGCAGAACAGAAGGACAGACAGCACACCCUAAAGCAUUUCGAGCAUGUGCGCAUGGUGGAUCCCAAGAAAGCCGCUCAGAUCCGGUCCCAGGUUAUGACACACC2000000009UCCGUGUGAUUUAUGAGCGCAUGAAUCAGUCUCUCUCCCUGCUCUACAACGUGCCUGCAGUGGCCGAGGAGAUUCAGGAUGAAGUUGAUGAGCUGCUUCAGAAAGAGCAAAACUAUUCAGAUGACGUCUUGGCCAACAUGAUUAGUGA2000000006ACCAAGGAUCAGUUACGGAAACGAUGCUCUCAUGCCAUCUUUGACCGAAACGAAAACCACCGUGGAGCUCCUUCCCGUGAAUGGAGAGUUCAGCCUGGACGAUCUCCAGCCGUGGCAUUCUUUUGGGGCUGACUCUGUGCCAGCCAACACAGAAAACGAAGUUGAGCCUGUUGAUGCCCGCCCUGCUGCCGACCGAGGACUGACCACUCGACCAGGUUCUGGGUUGACAAAUAUCAAGACGGAGGAGAUCUCUGAAGUGAAGAUGGAUGCAGAAUUCCGACAUGACUCAGGAUAUGAAGUUCAUCAUCAAAAAUUGGUGUUCUUUGCAGAAGAUGUGGGUUCAAACAAAGGUGCAAUCAUUGGACUCAUGGUGGGCGGUGUUGUCAUAGCGACAGUGAUCGUCAUCACCUUGGUGAUGCUGAAGAAGAAACAGUAC2000000006ACA2000000009UCCAUUCAUCAUGGUGUGGUGGAGGUUGACGCCGCUGUCACCCCAGAGGAGCGCCACCUGUCCAAGAUGCAGCAGAACGGCUACGAAAAUCCAACCUACAAGUUCUUUGAGCAGAUGCAGAACUAGACCCCCGCCACAGCAGCCUCUGAAGUUGGACAGCAAAACCAUUGCUUCACUACCCAUCGGUGUCCAUUUAUAGAAUAAUGUGGGAAGAAACAAACCCGUUUUAUGAUUUACUCAUUAUCGCCUUUUGACAGCUGUGCUGUA2000000006ACACAAGUAGAUGCCUGAACUUGAAUUAAUCCACACAUCAGUAAUGUAUUCUAUCUCUCU2000000009UUACAUUUUGGUCUCUAUACUACAUUAUUAAUGGGUUUUGUGUACUGUAAAGAAUUUAGCUGUAUCAAACUAGUGCAUGAAUAGAUUCUCUCCUGAUUAUUUAUCACAUAGCCCCUUAGCCAGUUGUAUAUUAUUCUUGUGGUUUGUGACCCAAUUAAGUCCUACU2000000009UUACAUAUGCU2000000009UUAAGAAUCGAUGGGGGAUGCUUCAUGUGAACGUGGGAGUUCAGCUGCUUCUCUUGCCUAAGUAUUCCUUUCCUGAUCACUAUGCAUUUUAAAGUUAA2000000006ACAUUUUUAAGUAUUUCAGAUGCU2000000009UUAGAGAGAUUUUUUUUCCAUGACUGCAUUUUACUGUACAGAUUGCUGCUUCUGCUAUAUUUGUGAUAUAGGAAUUAAGAGGAUACACACGUUUGUUUCUUCGUGCCUGUUUUAUGUGCACACAUUAGGCAUUGAGACUUCAAGCUUUUCUUUUUUUGUCCACGUAUCUUUGGGUCUUUGAUAAAGAAAAGAAUCCCUGUUCAUUGUAAGCACUUUUACGGGGCGGGUGGGGAGGGGUGCUCUGCUGGUCUUCAAUUACCAAGAAUUCUCCAAAACAAUUUUCUGCAGGAUGAUUGUACAGAAUCAUUGCUUAUGACAUGAUCGCUUUCUACACUGUAUUACAUAAAUAAAUUAAAUAAAAUAACCCCGGGCAAGACUUUUCUUUG2000000006AAGGAUGACUAC2000000006A2000000090GACAUUAAAUAAUCGAAGUAAUUUUGGGUGGGGAGAAGAGGCAGAUUCAAUUUUCU2000000009UUAACCAGUCUGAAGUUUCAUUUAUGAUACAAAAGAAGAUGAAAAUGGAAGUGGCAAUAUAAGGGGAUGAGGAAGGCAUGCCUGGACAAACCCUUCUUUUAAGAUGUGUCUUCAAUUUGUAUAAAAUGGUGUUUUCAUGUAAAUAAAUACAUUCUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 267 415 851 854 1121 1181 1347 1358 1456 1480 1866 1878 1879 1935
Modification positions Y m6A m6A Y m6A Y Y Y m6A Y m6A m6A Gm Y
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM