Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000327574
Gene ID: ENSG00000160209
Gene Name: PDXK
Sequence (UNICHARACTER ENCODING) AAGCCAUCCCACUGGCCUGGACUCUGCUGGGAUUAUUUUGACCCCCCAGGGCAGAGUGUAGCCAUCUGACUGGCUUUCUCUCUCGGCAGGAGACGGGGCGCACGCCUGCAGGCUUCAGUUUCACAUUCUUGGUACCUCCUGGUGGUGCCUGGGAGGGAGCCACUGCUGUACAGAGAUGCCAAUUCCAGAGGCAUGGUCCGGCACAGAGCGCUGGCUUCCAGCUGAAGGЖCAUGUGUAACAGCAGGAGAUACCUUUCUCUGGGGUCCCAGGCUCCCGUCCUGGACCUUGGCACCCCGCCCCCCGUGCAUUGUCGUCUUCUGAGUCUGGCUUUGUCUGGCACAUGAAGUUGGAUGGGUAGЖCUCUGGAAGCGUCCAGACCAGCUUGCGAUGCUGAUGAAUAAGCUGAUUUUGAUGGGGUGUGUGAAACGGAGAUGCCAGCCCAGGGGCUCAGCUUGCUCGUGCUCUCAUUUAAAAGCAGAAAAUAGCGЖCUUCAUUCUCGGAUACGUUUGCCAGCCCCAAAGGAUUAAUUAUCUACACACCCAGAAGCAGUGGAGCAGAAUAUUUUGGCAGGAUUUUCAGGAUUUGUGUCAUCGUUGCUUAAUAUCUGUUUCUUCACAGUCGGUUUUGGGAUUUGAGAUUGACGCGGUGAACUCUGUCCAGUUUUCAAЖCCACACAGAGACAAGGUCGGUCUCUGUCGCCCAGGCUGGCGUGAAGUGGCGCAACCAGCUCACUGCAGCCUUGACCUCCUGGGCUGAAGCAAUCUUUCUGCCUCCACCUCCCGAGUGGCUGGGACUAUAGUUGUGCACCAGCACGCCCACCUCCUGCCCAGGGUUGUUACUGGGGUGGUCACGUGGGCAGCUUCUGCCUGGGAUGGGCCACAAAGCCAGACUCCCGGCAGGGACACGGGUGUUCCACACAAGCUGCGUUGUUGGUUCCCUGACGCCCUUCAGGCUGGGGGGUGGGAAAGCCGAUCCCCCAAGUGCCUGCAGAGCCCACCUGGCGCAGGCCUCGCCGCCUCGAGGCUGCUGCUCGCACUUCUGCCCCUUCCCCCGGCCAGGCCCCCGUUCCUUGAGGCCGUACCACAAGGUGCGUUCAUUUUUCCACACCGUGAGCUGGGCUUGGCAGAGCCUCCACCUUGUGGCCAGUAUUCCCAGUGGCCCCUUUGAGAGGAUUUCCUGGAGCUCCCUGUCUGAGCUUCCCGGЖCUGAGGGCACUGGGAAGGAGCCUGCGGAGCUGGAGGUCAGCGGGUGGACGGGUUGCGCUGUCCUGGCUUUCGGAGUGUAGAGCCAGAGGGGAUGGGЖCAGGUGCCCUGCUGCUGGGCUUGGUGGUCCCUGCUGCAGGGAAGGGGCAGCUGGUGUGAACACAAGGAGCUGCGGGGCUGGAGAAGGCCAGGGCCAGGAGCCUGCCGACGGACACCAGCGAGGGGCCAGGCCGGGCCAGGAGCCUGCCGACGGACACCAGCGAGGGGCCAGGCCGGGCCAGACUCCCUGGCCGGCUGGGAUCUGACAGGAGUGCCAGGCUCCUUGGGCCGCCCGAGGAACCGCUUGUUUGCCUGUGCUUUUUCAUCUGUAAAUGGAAUGAGUUGGЖCACAAGAUCCAAGCGCCCUCCCCUGUUGGAGAAGGUUCUUGUGGGCUCUGGGCCCAUCCCACAUCCCACAGUGGGCAGGAGGCCACCAAGAGGUGCAAGACCAUGCCCUCUGUUUCGAUAGGAAGCUGGGCCUCAGAGGGGCCUGGGGCCUGUGUCUGAGACCCGGCCAAGUGCUGGЖCGUCUCCCCUUCCUCAUGGCUGUUAUGGCUGAAUUACGUCCCCCCAAAUUCUCAUGUUGCAGCCUUAACCCCAGCACCUCAGUGUGGGЖCUGGGUUUGGAGAUGGAGCCCCUACAGAGGUCAGCAGGUUAAAAGAGGCCAUCAGGGCUCUGGGUGGGCCCUGAUCCAAGCUGCUUGGUGUCCUUGUAAGAAGAAGAGAUGAGGACACAGACACACACAGAGGGACAGCCCCAUGAGGAAACAGGGAGGCAAUGCCGUCUGCAAGCCCAGGGCAGAGGCCUCAGGAACCAGCCCUGGUGACACCUGGЖCCUUGGACCCCCGUGCCCAGGЖCAGUAGGAGAAUUGGAGCCGCCUGGCUGCAGUCCUUCCCGAUGGCACCCUGUAUUAGUCCGUUCUCACACUGCUAAUUGUUGGGAAAAGGGCUUGUGGAAUGCCUGUAUAAACUGGCCAUGAAAAUAUGGGACAAUAAGUUGUGGAAAGCCACAAGAGGCCUCUGAGGAGGAAAGCCUCCUAAUUGCCAUCAUGUUCGCAUGCUCAGGGCGAGACCUGCUGUCUUAUCUGUAAACACCGUGUUCAAGGAGAAAGЖCAUUCCUUCGAAGCACUGGЖCUGUGGЖCAGACACACGAGCUCCUGGUUAAGCCCGCUCCCACCAGCUCCUGUCCGAUAAGUUAAAGAUACGCUGUUUGAGCACAAAGGAGAUUCAUUGAAACCGCUAUUGCUGUAGAUUACGCCUGUGACGCACUGCCUCCCUUUCACUGUUUCGCCCUGAAUAUCUGCUUCUCAGAUCUAAGUGACUGUACUCAAUAAAUAGCGUGGAGACCAGA
Sequence (SHORT NAMES ENCODING) AAGCCAUCCCACUGGCCUGGACUCUGCUGGGAUUAUUUUGACCCCCCAGGGCAGAGUGUAGCCAUCUGACUGGCUUUCUCUCUCGGCAGGAGACGGGGCGCACGCCUGCAGGCUUCAGUUUCACAUUCUUGGUACCUCCUGGUGGUGCCUGGGAGGGAGCCACUGCUGUACAGAGAUGCCAAUUCCAGAGGCAUGGUCCGGCACAGAGCGCUGGCUUCCAGCUGAAGGm6ACAUGUGUAACAGCAGGAGAUACCUUUCUCUGGGGUCCCAGGCUCCCGUCCUGGACCUUGGCACCCCGCCCCCCGUGCAUUGUCGUCUUCUGAGUCUGGCUUUGUCUGGCACAUGAAGUUGGAUGGGUAGm6ACUCUGGAAGCGUCCAGACCAGCUUGCGAUGCUGAUGAAUAAGCUGAUUUUGAUGGGGUGUGUGAAACGGAGAUGCCAGCCCAGGGGCUCAGCUUGCUCGUGCUCUCAUUUAAAAGCAGAAAAUAGCGm6ACUUCAUUCUCGGAUACGUUUGCCAGCCCCAAAGGAUUAAUUAUCUACACACCCAGAAGCAGUGGAGCAGAAUAUUUUGGCAGGAUUUUCAGGAUUUGUGUCAUCGUUGCUUAAUAUCUGUUUCUUCACAGUCGGUUUUGGGAUUUGAGAUUGACGCGGUGAACUCUGUCCAGUUUUCAAm6ACCACACAGAGACAAGGUCGGUCUCUGUCGCCCAGGCUGGCGUGAAGUGGCGCAACCAGCUCACUGCAGCCUUGACCUCCUGGGCUGAAGCAAUCUUUCUGCCUCCACCUCCCGAGUGGCUGGGACUAUAGUUGUGCACCAGCACGCCCACCUCCUGCCCAGGGUUGUUACUGGGGUGGUCACGUGGGCAGCUUCUGCCUGGGAUGGGCCACAAAGCCAGACUCCCGGCAGGGACACGGGUGUUCCACACAAGCUGCGUUGUUGGUUCCCUGACGCCCUUCAGGCUGGGGGGUGGGAAAGCCGAUCCCCCAAGUGCCUGCAGAGCCCACCUGGCGCAGGCCUCGCCGCCUCGAGGCUGCUGCUCGCACUUCUGCCCCUUCCCCCGGCCAGGCCCCCGUUCCUUGAGGCCGUACCACAAGGUGCGUUCAUUUUUCCACACCGUGAGCUGGGCUUGGCAGAGCCUCCACCUUGUGGCCAGUAUUCCCAGUGGCCCCUUUGAGAGGAUUUCCUGGAGCUCCCUGUCUGAGCUUCCCGGm6ACUGAGGGCACUGGGAAGGAGCCUGCGGAGCUGGAGGUCAGCGGGUGGACGGGUUGCGCUGUCCUGGCUUUCGGAGUGUAGAGCCAGAGGGGAUGGGm6ACAGGUGCCCUGCUGCUGGGCUUGGUGGUCCCUGCUGCAGGGAAGGGGCAGCUGGUGUGAACACAAGGAGCUGCGGGGCUGGAGAAGGCCAGGGCCAGGAGCCUGCCGACGGACACCAGCGAGGGGCCAGGCCGGGCCAGGAGCCUGCCGACGGACACCAGCGAGGGGCCAGGCCGGGCCAGACUCCCUGGCCGGCUGGGAUCUGACAGGAGUGCCAGGCUCCUUGGGCCGCCCGAGGAACCGCUUGUUUGCCUGUGCUUUUUCAUCUGUAAAUGGAAUGAGUUGGm6ACACAAGAUCCAAGCGCCCUCCCCUGUUGGAGAAGGUUCUUGUGGGCUCUGGGCCCAUCCCACAUCCCACAGUGGGCAGGAGGCCACCAAGAGGUGCAAGACCAUGCCCUCUGUUUCGAUAGGAAGCUGGGCCUCAGAGGGGCCUGGGGCCUGUGUCUGAGACCCGGCCAAGUGCUGGm6ACGUCUCCCCUUCCUCAUGGCUGUUAUGGCUGAAUUACGUCCCCCCAAAUUCUCAUGUUGCAGCCUUAACCCCAGCACCUCAGUGUGGGm6ACUGGGUUUGGAGAUGGAGCCCCUACAGAGGUCAGCAGGUUAAAAGAGGCCAUCAGGGCUCUGGGUGGGCCCUGAUCCAAGCUGCUUGGUGUCCUUGUAAGAAGAAGAGAUGAGGACACAGACACACACAGAGGGACAGCCCCAUGAGGAAACAGGGAGGCAAUGCCGUCUGCAAGCCCAGGGCAGAGGCCUCAGGAACCAGCCCUGGUGACACCUGGm6ACCUUGGACCCCCGUGCCCAGGm6ACAGUAGGAGAAUUGGAGCCGCCUGGCUGCAGUCCUUCCCGAUGGCACCCUGUAUUAGUCCGUUCUCACACUGCUAAUUGUUGGGAAAAGGGCUUGUGGAAUGCCUGUAUAAACUGGCCAUGAAAAUAUGGGACAAUAAGUUGUGGAAAGCCACAAGAGGCCUCUGAGGAGGAAAGCCUCCUAAUUGCCAUCAUGUUCGCAUGCUCAGGGCGAGACCUGCUGUCUUAUCUGUAAACACCGUGUUCAAGGAGAAAGm6ACAUUCCUUCGAAGCACUGGm6ACUGUGGm6ACAGACACACGAGCUCCUGGUUAAGCCCGCUCCCACCAGCUCCUGUCCGAUAAGUUAAAGAUACGCUGUUUGAGCACAAAGGAGAUUCAUUGAAACCGCUAUUGCUGUAGAUUACGCCUGUGACGCACUGCCUCCCUUUCACUGUUUCGCCCUGAAUAUCUGCUUCUCAGAUCUAAGUGACUGUACUCAAUAAAUAGCGUGGAGACCAGA
Sequence (MODOMICS CODE ENCODING) AAGCCAUCCCACUGGCCUGGACUCUGCUGGGAUUAUUUUGACCCCCCAGGGCAGAGUGUAGCCAUCUGACUGGCUUUCUCUCUCGGCAGGAGACGGGGCGCACGCCUGCAGGCUUCAGUUUCACAUUCUUGGUACCUCCUGGUGGUGCCUGGGAGGGAGCCACUGCUGUACAGAGAUGCCAAUUCCAGAGGCAUGGUCCGGCACAGAGCGCUGGCUUCCAGCUGAAGG2000000006ACAUGUGUAACAGCAGGAGAUACCUUUCUCUGGGGUCCCAGGCUCCCGUCCUGGACCUUGGCACCCCGCCCCCCGUGCAUUGUCGUCUUCUGAGUCUGGCUUUGUCUGGCACAUGAAGUUGGAUGGGUAG2000000006ACUCUGGAAGCGUCCAGACCAGCUUGCGAUGCUGAUGAAUAAGCUGAUUUUGAUGGGGUGUGUGAAACGGAGAUGCCAGCCCAGGGGCUCAGCUUGCUCGUGCUCUCAUUUAAAAGCAGAAAAUAGCG2000000006ACUUCAUUCUCGGAUACGUUUGCCAGCCCCAAAGGAUUAAUUAUCUACACACCCAGAAGCAGUGGAGCAGAAUAUUUUGGCAGGAUUUUCAGGAUUUGUGUCAUCGUUGCUUAAUAUCUGUUUCUUCACAGUCGGUUUUGGGAUUUGAGAUUGACGCGGUGAACUCUGUCCAGUUUUCAA2000000006ACCACACAGAGACAAGGUCGGUCUCUGUCGCCCAGGCUGGCGUGAAGUGGCGCAACCAGCUCACUGCAGCCUUGACCUCCUGGGCUGAAGCAAUCUUUCUGCCUCCACCUCCCGAGUGGCUGGGACUAUAGUUGUGCACCAGCACGCCCACCUCCUGCCCAGGGUUGUUACUGGGGUGGUCACGUGGGCAGCUUCUGCCUGGGAUGGGCCACAAAGCCAGACUCCCGGCAGGGACACGGGUGUUCCACACAAGCUGCGUUGUUGGUUCCCUGACGCCCUUCAGGCUGGGGGGUGGGAAAGCCGAUCCCCCAAGUGCCUGCAGAGCCCACCUGGCGCAGGCCUCGCCGCCUCGAGGCUGCUGCUCGCACUUCUGCCCCUUCCCCCGGCCAGGCCCCCGUUCCUUGAGGCCGUACCACAAGGUGCGUUCAUUUUUCCACACCGUGAGCUGGGCUUGGCAGAGCCUCCACCUUGUGGCCAGUAUUCCCAGUGGCCCCUUUGAGAGGAUUUCCUGGAGCUCCCUGUCUGAGCUUCCCGG2000000006ACUGAGGGCACUGGGAAGGAGCCUGCGGAGCUGGAGGUCAGCGGGUGGACGGGUUGCGCUGUCCUGGCUUUCGGAGUGUAGAGCCAGAGGGGAUGGG2000000006ACAGGUGCCCUGCUGCUGGGCUUGGUGGUCCCUGCUGCAGGGAAGGGGCAGCUGGUGUGAACACAAGGAGCUGCGGGGCUGGAGAAGGCCAGGGCCAGGAGCCUGCCGACGGACACCAGCGAGGGGCCAGGCCGGGCCAGGAGCCUGCCGACGGACACCAGCGAGGGGCCAGGCCGGGCCAGACUCCCUGGCCGGCUGGGAUCUGACAGGAGUGCCAGGCUCCUUGGGCCGCCCGAGGAACCGCUUGUUUGCCUGUGCUUUUUCAUCUGUAAAUGGAAUGAGUUGG2000000006ACACAAGAUCCAAGCGCCCUCCCCUGUUGGAGAAGGUUCUUGUGGGCUCUGGGCCCAUCCCACAUCCCACAGUGGGCAGGAGGCCACCAAGAGGUGCAAGACCAUGCCCUCUGUUUCGAUAGGAAGCUGGGCCUCAGAGGGGCCUGGGGCCUGUGUCUGAGACCCGGCCAAGUGCUGG2000000006ACGUCUCCCCUUCCUCAUGGCUGUUAUGGCUGAAUUACGUCCCCCCAAAUUCUCAUGUUGCAGCCUUAACCCCAGCACCUCAGUGUGGG2000000006ACUGGGUUUGGAGAUGGAGCCCCUACAGAGGUCAGCAGGUUAAAAGAGGCCAUCAGGGCUCUGGGUGGGCCCUGAUCCAAGCUGCUUGGUGUCCUUGUAAGAAGAAGAGAUGAGGACACAGACACACACAGAGGGACAGCCCCAUGAGGAAACAGGGAGGCAAUGCCGUCUGCAAGCCCAGGGCAGAGGCCUCAGGAACCAGCCCUGGUGACACCUGG2000000006ACCUUGGACCCCCGUGCCCAGG2000000006ACAGUAGGAGAAUUGGAGCCGCCUGGCUGCAGUCCUUCCCGAUGGCACCCUGUAUUAGUCCGUUCUCACACUGCUAAUUGUUGGGAAAAGGGCUUGUGGAAUGCCUGUAUAAACUGGCCAUGAAAAUAUGGGACAAUAAGUUGUGGAAAGCCACAAGAGGCCUCUGAGGAGGAAAGCCUCCUAAUUGCCAUCAUGUUCGCAUGCUCAGGGCGAGACCUGCUGUCUUAUCUGUAAACACCGUGUUCAAGGAGAAAG2000000006ACAUUCCUUCGAAGCACUGG2000000006ACUGUGG2000000006ACAGACACACGAGCUCCUGGUUAAGCCCGCUCCCACCAGCUCCUGUCCGAUAAGUUAAAGAUACGCUGUUUGAGCACAAAGGAGAUUCAUUGAAACCGCUAUUGCUGUAGAUUACGCCUGUGACGCACUGCCUCCCUUUCACUGUUUCGCCCUGAAUAUCUGCUUCUCAGAUCUAAGUGACUGUACUCAAUAAAUAGCGUGGAGACCAGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 229 359 487 667 1202 1299 1585 1763 1852 2070 2092 2347 2367 2374
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 21:43732256:+ 21:43732386:+ 21:43732514:+ 21:43734115:+ 21:43737480:+ 21:43737577:+ 21:43737863:+ 21:43738041:+ 21:43738130:+ 21:43738348:+ 21:43738370:+ 21:43738625:+ 21:43738645:+ 21:43738652:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
QmcpiJ88DBDn
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
6UuHp6YApVKv
msuJfBpJvM5H
VyCX26p5UBRL
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
6UuHp6YApVKv
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6UuHp6YApVKv
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
6UuHp6YApVKv
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
6UuHp6YApVKv
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
VyCX26p5UBRL
WdHxkJGRmFxn
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
6UuHp6YApVKv
msuJfBpJvM5H
VyCX26p5UBRL