General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000351097
Gene ID:	ENSG00000155313
Gene Name:	USP25
Sequence (UNICHARACTER ENCODING)	AAGCAGCCCGCGGACCGGCAGCAAAGGAACGUGCGAACGCGUGACGCCGCCCGACUGGCUCGCGCUCUCCCGUGCCCCGGCGUCCUCCGCCCGCUCAUGGCCCGGGCCGCCGCGGACGAGCGGCGCUGAGGCGGGCCGCGUGGAGACGUGAGGCGGCCGCCGUGGCCCUCACAGUCGGCGUUUCGCCGCCUGCCCGCGGUGCCCGCGCACGCCGGCCGCCAUCGCCUUCGCGCCUGGCUGGCGGGGGCGCUGUCCUCCCAGGCCGUCCGCGCCGCUCCCUGGAGCUCGGCGGAGCGCGGCAGCCAGGGCCGGCGGAGGCGCGAGGAGCCGGGCGCCACCGCCGCCGCCGCCGCCGCCGCCGCGGGGGCCAUGACCGUGGAGCAGAACGUGCUGCAGCAGAGCGCGGCGCAGAAGCACCAGCAGACGUUUUUGAAUCAACUGAGAGAAAUUACGGGGAUUAAUGACACCCAGAUACUACAGCAAGCCUUGAAGGAUAGUAAUGGAAACUUGGAAUUAGCAGUGGCUUUCCUUACUGCGAAGAAUGCUAAGACCCCUCAGCAGGAGGAGACAACUUACUACCAAACAGCACUUCCUGGCAAUGAUAGAUACAUCAGUGUGGGAAGCCAAGCAGAUACAAAUGUGAUUGAUCUCACUGGAGAUGAUAAAGAUGAUCUUCAGAGAGCAAUUGCCUUGAGUUUGGCCGAAUCAAACAGGGCAUUCAGGGAGACUGGAAUAACUGAUGAGGAACAAGCCAUUAGCAGAGUUCUUGAAGCCAGCAUAGCAGAGAAUAAAGCAUGUUUGAAGAGGACACCUACAGAAGUUUGGAGGGAUUCUCGAAACCCUUAUGAUAGAAAAAGACAGGACAAAGCUCCCGUUGGGCUAAAGAAUGUUGGCAAUACUUGUUGGUUUAGUGCUGUUAUUCAGUCAUUAUUUAAUCUUUUGGAAUUUAGAAGAUUAGUUCUGAAUUACAAGCCUCCAUCAAAUGCUCAAGAUUUACCCCGAAACCAAAAGGAACAUCGGAAUUUGCCUUUUAUGCGUGAGCUGAGGUAUCUAUUUGCACUUCUUGUUGGUACCAAAAGGAAGUAUGUUGAUCCAUCAAGAGCAGUUGAAAUUCUUAAGGAUGCUUUCAAAUCAAAUGACUCACAGCAGGAGUGGCAUCAGGAUUAUAGGAAAUUCAGGGAAACAACUAUGUAUCUCAUAAUUGGGCUAGAAAAUUUUCAAAGAGAAAGUUAUAUAGAUUCCUUGCUGUUCCUCAUCUGUGCUUAUCAGAAUAACAAAGAACUCUUGUCUAAAGGCUUAUACAGAGGACAUGAUGAAGAAUUGAUAUCACAUUAUAGAAGAGAAUGUUUGCUAAAAUUAAAUGAGCAAGCCGCAGAACUCUUCGAAUCUGGAGAGGAUCGAGAAGUAAЖCAAUGGUUUGAUUAUCAUGAAUGAGUUUAUUGUCCCAUUUUUGCCAUUAUUACUGGUGGAUGAAAUGGAAGAAAAGGAUAUACUAGCUGUAGAAGAUAUGAGAAAUCGAUGGUGUUCCUACCUUGGUCAAGAAAUGGAACCACACCPCCAAGAAAAGCUGACAGAUUUUUUGCCAAAACUGCUUGAUUGUUCUAUGGAGAUUAAAAGUUUCCAUGAGCCACCGAAGUUACCUUCAUAUUCCACGCAUGAЖCUCUGUGAGCGAUUUGCCCGAAUCAUGUUGUCCCUCAGUCGAACUCCUGCUGAUGGAAGAUAAЖCUGCACACUUUCCCUGAACACACUGUAUAAЖCUCUUUUUAGUUCUUAACCCUUGCCUUCCUGUCACAGGGUUUGCUUGUUGCUGCUAUAGUUUUUAЖCUUUUUUUUAUUUUAAUAЖCUGCAAAAGACAAAAUGACUAUACAGЖCUPUAGUCAGACUGCAGACAAUAAAGCUGAAAAUCGCAUGGCGCUCAGACAUUUUAACCGGAЖCUGAUGUAUAAUCACAAAUCUAAUUGAUUUUAUUAUGGCAAAACUAUGCUUUUGCCACCUUCCUGUUGCAGUAUUACUUUGCUUUUAUCUUUUCUUUCUCAACAGCUUUCCAUUCAGUCUGGAUCCUUCCAUGACUACAGCCAUUUAAGUGUUCAGCACUGUGUACGAUACAUAAUAUUUGGUAGCUUGUAAAUGAAAUAAAGAAUAAAGUUUUAUUUAUGGCUACCUA
Sequence (SHORT NAMES ENCODING)	AAGCAGCCCGCGGACCGGCAGCAAAGGAACGUGCGAACGCGUGACGCCGCCCGACUGGCUCGCGCUCUCCCGUGCCCCGGCGUCCUCCGCCCGCUCAUGGCCCGGGCCGCCGCGGACGAGCGGCGCUGAGGCGGGCCGCGUGGAGACGUGAGGCGGCCGCCGUGGCCCUCACAGUCGGCGUUUCGCCGCCUGCCCGCGGUGCCCGCGCACGCCGGCCGCCAUCGCCUUCGCGCCUGGCUGGCGGGGGCGCUGUCCUCCCAGGCCGUCCGCGCCGCUCCCUGGAGCUCGGCGGAGCGCGGCAGCCAGGGCCGGCGGAGGCGCGAGGAGCCGGGCGCCACCGCCGCCGCCGCCGCCGCCGCCGCGGGGGCCAUGACCGUGGAGCAGAACGUGCUGCAGCAGAGCGCGGCGCAGAAGCACCAGCAGACGUUUUUGAAUCAACUGAGAGAAAUUACGGGGAUUAAUGACACCCAGAUACUACAGCAAGCCUUGAAGGAUAGUAAUGGAAACUUGGAAUUAGCAGUGGCUUUCCUUACUGCGAAGAAUGCUAAGACCCCUCAGCAGGAGGAGACAACUUACUACCAAACAGCACUUCCUGGCAAUGAUAGAUACAUCAGUGUGGGAAGCCAAGCAGAUACAAAUGUGAUUGAUCUCACUGGAGAUGAUAAAGAUGAUCUUCAGAGAGCAAUUGCCUUGAGUUUGGCCGAAUCAAACAGGGCAUUCAGGGAGACUGGAAUAACUGAUGAGGAACAAGCCAUUAGCAGAGUUCUUGAAGCCAGCAUAGCAGAGAAUAAAGCAUGUUUGAAGAGGACACCUACAGAAGUUUGGAGGGAUUCUCGAAACCCUUAUGAUAGAAAAAGACAGGACAAAGCUCCCGUUGGGCUAAAGAAUGUUGGCAAUACUUGUUGGUUUAGUGCUGUUAUUCAGUCAUUAUUUAAUCUUUUGGAAUUUAGAAGAUUAGUUCUGAAUUACAAGCCUCCAUCAAAUGCUCAAGAUUUACCCCGAAACCAAAAGGAACAUCGGAAUUUGCCUUUUAUGCGUGAGCUGAGGUAUCUAUUUGCACUUCUUGUUGGUACCAAAAGGAAGUAUGUUGAUCCAUCAAGAGCAGUUGAAAUUCUUAAGGAUGCUUUCAAAUCAAAUGACUCACAGCAGGAGUGGCAUCAGGAUUAUAGGAAAUUCAGGGAAACAACUAUGUAUCUCAUAAUUGGGCUAGAAAAUUUUCAAAGAGAAAGUUAUAUAGAUUCCUUGCUGUUCCUCAUCUGUGCUUAUCAGAAUAACAAAGAACUCUUGUCUAAAGGCUUAUACAGAGGACAUGAUGAAGAAUUGAUAUCACAUUAUAGAAGAGAAUGUUUGCUAAAAUUAAAUGAGCAAGCCGCAGAACUCUUCGAAUCUGGAGAGGAUCGAGAAGUAAm6ACAAUGGUUUGAUUAUCAUGAAUGAGUUUAUUGUCCCAUUUUUGCCAUUAUUACUGGUGGAUGAAAUGGAAGAAAAGGAUAUACUAGCUGUAGAAGAUAUGAGAAAUCGAUGGUGUUCCUACCUUGGUCAAGAAAUGGAACCACACCYCCAAGAAAAGCUGACAGAUUUUUUGCCAAAACUGCUUGAUUGUUCUAUGGAGAUUAAAAGUUUCCAUGAGCCACCGAAGUUACCUUCAUAUUCCACGCAUGAm6ACUCUGUGAGCGAUUUGCCCGAAUCAUGUUGUCCCUCAGUCGAACUCCUGCUGAUGGAAGAUAAm6ACUGCACACUUUCCCUGAACACACUGUAUAAm6ACUCUUUUUAGUUCUUAACCCUUGCCUUCCUGUCACAGGGUUUGCUUGUUGCUGCUAUAGUUUUUAm6ACUUUUUUUUAUUUUAAUAm6ACUGCAAAAGACAAAAUGACUAUACAGm6ACUYUAGUCAGACUGCAGACAAUAAAGCUGAAAAUCGCAUGGCGCUCAGACAUUUUAACCGGAm6ACUGAUGUAUAAUCACAAAUCUAAUUGAUUUUAUUAUGGCAAAACUAUGCUUUUGCCACCUUCCUGUUGCAGUAUUACUUUGCUUUUAUCUUUUCUUUCUCAACAGCUUUCCAUUCAGUCUGGAUCCUUCCAUGACUACAGCCAUUUAAGUGUUCAGCACUGUGUACGAUACAUAAUAUUUGGUAGCUUGUAAAUGAAAUAAAGAAUAAAGUUUUAUUUAUGGCUACCUA
Sequence (MODOMICS CODE ENCODING)	AAGCAGCCCGCGGACCGGCAGCAAAGGAACGUGCGAACGCGUGACGCCGCCCGACUGGCUCGCGCUCUCCCGUGCCCCGGCGUCCUCCGCCCGCUCAUGGCCCGGGCCGCCGCGGACGAGCGGCGCUGAGGCGGGCCGCGUGGAGACGUGAGGCGGCCGCCGUGGCCCUCACAGUCGGCGUUUCGCCGCCUGCCCGCGGUGCCCGCGCACGCCGGCCGCCAUCGCCUUCGCGCCUGGCUGGCGGGGGCGCUGUCCUCCCAGGCCGUCCGCGCCGCUCCCUGGAGCUCGGCGGAGCGCGGCAGCCAGGGCCGGCGGAGGCGCGAGGAGCCGGGCGCCACCGCCGCCGCCGCCGCCGCCGCCGCGGGGGCCAUGACCGUGGAGCAGAACGUGCUGCAGCAGAGCGCGGCGCAGAAGCACCAGCAGACGUUUUUGAAUCAACUGAGAGAAAUUACGGGGAUUAAUGACACCCAGAUACUACAGCAAGCCUUGAAGGAUAGUAAUGGAAACUUGGAAUUAGCAGUGGCUUUCCUUACUGCGAAGAAUGCUAAGACCCCUCAGCAGGAGGAGACAACUUACUACCAAACAGCACUUCCUGGCAAUGAUAGAUACAUCAGUGUGGGAAGCCAAGCAGAUACAAAUGUGAUUGAUCUCACUGGAGAUGAUAAAGAUGAUCUUCAGAGAGCAAUUGCCUUGAGUUUGGCCGAAUCAAACAGGGCAUUCAGGGAGACUGGAAUAACUGAUGAGGAACAAGCCAUUAGCAGAGUUCUUGAAGCCAGCAUAGCAGAGAAUAAAGCAUGUUUGAAGAGGACACCUACAGAAGUUUGGAGGGAUUCUCGAAACCCUUAUGAUAGAAAAAGACAGGACAAAGCUCCCGUUGGGCUAAAGAAUGUUGGCAAUACUUGUUGGUUUAGUGCUGUUAUUCAGUCAUUAUUUAAUCUUUUGGAAUUUAGAAGAUUAGUUCUGAAUUACAAGCCUCCAUCAAAUGCUCAAGAUUUACCCCGAAACCAAAAGGAACAUCGGAAUUUGCCUUUUAUGCGUGAGCUGAGGUAUCUAUUUGCACUUCUUGUUGGUACCAAAAGGAAGUAUGUUGAUCCAUCAAGAGCAGUUGAAAUUCUUAAGGAUGCUUUCAAAUCAAAUGACUCACAGCAGGAGUGGCAUCAGGAUUAUAGGAAAUUCAGGGAAACAACUAUGUAUCUCAUAAUUGGGCUAGAAAAUUUUCAAAGAGAAAGUUAUAUAGAUUCCUUGCUGUUCCUCAUCUGUGCUUAUCAGAAUAACAAAGAACUCUUGUCUAAAGGCUUAUACAGAGGACAUGAUGAAGAAUUGAUAUCACAUUAUAGAAGAGAAUGUUUGCUAAAAUUAAAUGAGCAAGCCGCAGAACUCUUCGAAUCUGGAGAGGAUCGAGAAGUAA2000000006ACAAUGGUUUGAUUAUCAUGAAUGAGUUUAUUGUCCCAUUUUUGCCAUUAUUACUGGUGGAUGAAAUGGAAGAAAAGGAUAUACUAGCUGUAGAAGAUAUGAGAAAUCGAUGGUGUUCCUACCUUGGUCAAGAAAUGGAACCACACC2000000009UCCAAGAAAAGCUGACAGAUUUUUUGCCAAAACUGCUUGAUUGUUCUAUGGAGAUUAAAAGUUUCCAUGAGCCACCGAAGUUACCUUCAUAUUCCACGCAUGA2000000006ACUCUGUGAGCGAUUUGCCCGAAUCAUGUUGUCCCUCAGUCGAACUCCUGCUGAUGGAAGAUAA2000000006ACUGCACACUUUCCCUGAACACACUGUAUAA2000000006ACUCUUUUUAGUUCUUAACCCUUGCCUUCCUGUCACAGGGUUUGCUUGUUGCUGCUAUAGUUUUUA2000000006ACUUUUUUUUAUUUUAAUA2000000006ACUGCAAAAGACAAAAUGACUAUACAG2000000006ACU2000000009UUAGUCAGACUGCAGACAAUAAAGCUGAAAAUCGCAUGGCGCUCAGACAUUUUAACCGGA2000000006ACUGAUGUAUAAUCACAAAUCUAAUUGAUUUUAUUAUGGCAAAACUAUGCUUUUGCCACCUUCCUGUUGCAGUAUUACUUUGCUUUUAUCUUUUCUUUCUCAACAGCUUUCCAUUCAGUCUGGAUCCUUCCAUGACUACAGCCAUUUAAGUGUUCAGCACUGUGUACGAUACAUAAUAUUUGGUAGCUUGUAAAUGAAAUAAAGAAUAAAGUUUUAUUUAUGGCUACCUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1409	1556	1659	1723	1754	1820	1839	1866	1869	1929
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	21:15877851:+	21:15878309:+	21:15878412:+	21:15878476:+	21:15878507:+	21:15878573:+	21:15878592:+	21:15878619:+	21:15878622:+	21:15878682:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq dknfVe6BK8aP	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6	5aTkEfEpX8Xm BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda