Modomics - A Database of RNA Modifications

General Data

RNA Type tRNA
SOTerm SO:0000257
Original Source tdbR00000662
Sequence (UNICHARACTER ENCODING) UCCUCGUUHGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGNUCHHUUCCCCGACGGGGAGCCA
Sequence (SHORT NAMES ENCODING) UCCUCGUUxAGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGxUUCxAxAUUCCCCGACGGGGAGCCA
Sequence (MODOMICS CODE ENCODING) UCCUCGUU2000000999AGUAUAGUGGUUAGUAUCCCCGCCUGUCACGCGGGAGACCGGGG2000000999UUC2000000999A2000000999AUUCCCCGACGGGGAGCCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 8 52 55 56
Modification positions xA xU xA xA
Level of Experimental Evidence None None None None
Level of Experimental Reliability None None None None
Source MODOMICS MODOMICS MODOMICS MODOMICS