Modomics - A Database of RNA Modifications

General Data

RNA Type other
Original Source 7KUO_B
Sequence (UNICHARACTER ENCODING) LKCLCCLCCACUUAAGUCGFL
Sequence (SHORT NAMES ENCODING) pm2Gpm1GCpm2GCCpm2GCCLCGACUUAAGUCGpm5s2Upm2G
Sequence (MODOMICS CODE ENCODING) 2000002551G2000001551GC2000002551GCC2000002551GCCACUUAAGUCG2000025551U2000002551G

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 0 1 3 6 9 20 21
Modification positions pm2G pm1G pm2G pm2G LCG pm5s2U pm2G
Level of Experimental Evidence 5 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS