Modomics - A Database of RNA Modifications

General Data

RNA Type rRNA
Original Source MARCHAND_HS18S
Sequence (UNICHARACTER ENCODING) UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGPCPCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAPGGCUCAUUAAAPCAGPUAUGGUUCCPUUGGUCGCUCGCUCCUCUCCCACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAPGCGUGCAPUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCPAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGPGACGGGGAAUCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUPUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUCPGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAPAPUAAAGUUGCUGCAGUUAAAAAGCUCGUAGPUGGAPCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGCGUUPACUUUGAAAAAAPPAGAGUGPUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAAPAAPGGAAUAGGACCGCGGUUCUAUUUUGUUGGUPUUCGGAACUGAGGCCAUGAUPAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUPCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUPGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGPPCGAAGACGAPCAGAUACCGUCGUAGUUCCGACCAPAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCPUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAPGGPUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCPGCGGCPUAAUUPGACUCAACACGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCCGUUCUUAGUPGGUGGAGCGAUUUGUCUGGPUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUUCUPAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUPCCCCAUGAACGAGGAAUPCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUUPGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA
Sequence (SHORT NAMES ENCODING) UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGpYCpYCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAApYGGCUCAUUAAApYCAGpYUAUGGUUCCpYUUGGUCGCUCGCUCCUCUCCCACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGApYGCGUGCApYUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCpYAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGpYGACGGGGAAUCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUpYUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUCpYGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUApYApYUAAAGUUGCUGCAGUUAAAAAGCUCGUAGpYUGGApYCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGCGUUpYACUUUGAAAAAApYpYAGAGUGpYUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAApYAApYGGAAUAGGACCGCGGUUCUAUUUUGUUGGUpYUUCGGAACUGAGGCCAUGAUpYAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUpYCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUpYGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGpYpYCGAAGACGApYCAGAUACCGUCGUAGUUCCGACCApYAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCpYUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUApYGGpYUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCpYGCGGCpYUAAUUpYGACUCAACACGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCCGUUCUUAGUpYGGUGGAGCGAUUUGUCUGGpYUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUUCUpYAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUpYCCCCAUGAACGAGGAAUpYCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUUpYGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA
Sequence (MODOMICS CODE ENCODING) UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUG2000009551UC2000009551UCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAA2000009551UGGCUCAUUAAA2000009551UCAG2000009551UUAUGGUUCC2000009551UUUGGUCGCUCGCUCCUCUCCCACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGA2000009551UGCGUGCA2000009551UUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUC2000009551UAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGG2000009551UGACGGGGAAUCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACU2000009551UUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUC2000009551UGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUA2000009551UA2000009551UUAAAGUUGCUGCAGUUAAAAAGCUCGUAG2000009551UUGGA2000009551UCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGCGUU2000009551UACUUUGAAAAAA2000009551U2000009551UAGAGUG2000009551UUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAA2000009551UAA2000009551UGGAAUAGGACCGCGGUUCUAUUUUGUUGGU2000009551UUUCGGAACUGAGGCCAUGAU2000009551UAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAU2000009551UCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUU2000009551UGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGG2000009551U2000009551UCGAAGACGA2000009551UCAGAUACCGUCGUAGUUCCGACCA2000009551UAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGC2000009551UUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUA2000009551UGG2000009551UUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCC2000009551UGCGGC2000009551UUAAUU2000009551UGACUCAACACGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCCGUUCUUAGU2000009551UGGUGGAGCGAUUUGUCUGG2000009551UUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUUCU2000009551UAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAU2000009551UCCCCAUGAACGAGGAAU2000009551UCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUU2000009551UGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 33 35 92 104 108 118 209 217 295 405 571 608 648 650 680 685 800 813 814 821 862 865 896 917 965 1003 1044 1045 1055 1080 1135 1173 1176 1231 1237 1243 1346 1366 1444 1624 1642 1691
Modification positions pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY pY
Level of Experimental Evidence 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS