Modomics - A Database of RNA Modifications

General Data

RNA Type rRNA
Original Source RIBOMAP_HS18S
Sequence (UNICHARACTER ENCODING) UACCUGGUUGAUCCUGCCAGUAGCAUʍUGCUUGPCPCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAPGGCUCʍUUAAAPCAGPUAUGGUJCCPUJGGUCGCUCGCUCCUCUCCCACUUGGAUAACUGUGGUAʍUUCUAGʍGCUAAJABAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAPGCGUGCAPUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGPGACGGGGAAUCAGGGUUCGAUJCCGGAGA#GGAGCCUGAGAAACGGCUACCACAUBCAAGGʍAGGCAGCAGGCGCGCʍAAUUACCCACUCCCGACCCGGGGA#GUʍGUGABGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUPUAAʍUCCUUUAACGAGGʍUCCAUUGGAG#GCAAGUCPGGUGCCAGCAGCCGCGGJAAUUCCAGCUCCAAUA#CGUAPAPUAAAGUUGCUGCAGUUʍAAAAGCUCGUAGPU#GAPCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGBGJUPACUUUGAAAAAAPPAGAGUGPUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAAPAAP#GAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUPAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUPCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUPGCCAAGAAUGUUUUCAUUAAUCAAGAʍCGAAAGUCGGAGGUUCGAAGACGAPCAGAUACCGUCGUAGUUCCGACCAPAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAPGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCPUAAUUPGACαCAACACGGGAAACCUCACCCGGCBCGGACACGGACAGGAJUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGZG#UGCAUGGCCGUUCUUAGUPGGUGGAGCGAUUUGUCUGGPUAAUUCCGAUAACGAʍCGAGACUBUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUJCUPAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACA#GUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUPCCCCAUGAACGAG7AAUPCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUʍAGUCCCUGCCCUUPGUACACACCGBCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUJGACUAUCUAGAGGAAGUAAAAGUCGUAЖCAAGGUUUCCGUAGGUGζζCCUGCGGAAGGAUCAUUA
Sequence (SHORT NAMES ENCODING) UACCUGGUUGAUCCUGCCAGUAGCAUpAmUGCUUGpYCpYCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAApYGGCUCpAmUUAAApYCAGpYUAUGGUpUmCCpYUpUmGGUCGCUCGCUCCUCUCCCACUUGGAUAACUGUGGUApAmUUCUAGpAmGCUAApUmApCmAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGApYGCGUGCApYUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGpYGACGGGGAAUCAGGGUUCGAUpUmCCGGAGApGmGGAGCCUGAGAAACGGCUACCACAUpCmCAAGGpAmAGGCAGCAGGCGCGCpAmAAUUACCCACUCCCGACCCGGGGApGmGUpAmGUGApCmGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUpYUAApAmUCCUUUAACGAGGpAmUCCAUUGGAGpGmGCAAGUCpYGGUGCCAGCAGCCGCGGpUmAAUUCCAGCUCCAAUApGmCGUApYApYUAAAGUUGCUGCAGUUpAmAAAAGCUCGUAGpYUpGmGApYCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGpCmGpUmUpYACUUUGAAAAAApYpYAGAGUGpYUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAApYAApYpGmGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUpYAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUpYCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUpYGCCAAGAAUGUUUUCAUUAAUCAAGApAmCGAAAGUCGGAGGUUCGAAGACGApYCAGAUACCGUCGUAGUUCCGACCApYAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUApYGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCpYUAAUUpYGACpm1acp3YCAACACGGGAAACCUCACCCGGCpCmCGGACACGGACAGGApUmUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGpYmGpGmUGCAUGGCCGUUCUUAGUpYGGUGGAGCGAUUUGUCUGGpYUAAUUCCGAUAACGApAmCGAGACUpCmUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUpUmCUpYAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACApGmGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUpYCCCCAUGAACGAGpm7GAAUpYCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUpAmAGUCCCUGCCCUUpYGUACACACCGpCmCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUpUmGACUAUCUAGAGGAAGUAAAAGUCGUApm6ACAAGGUUUCCGUAGGUGpm6,6Apm6,6ACCUGCGGAAGGAUCAUUA
Sequence (MODOMICS CODE ENCODING) UACCUGGUUGAUCCUGCCAGUAGCAU2000090551AUGCUUG2000009551UC2000009551UCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAA2000009551UGGCUC2000090551AUUAAA2000009551UCAG2000009551UUAUGGU2000090551UCC2000009551UU2000090551UGGUCGCUCGCUCCUCUCCCACUUGGAUAACUGUGGUA2000090551AUUCUAG2000090551AGCUAA2000090551UA2000090551CAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGA2000009551UGCGUGCA2000009551UUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGG2000009551UGACGGGGAAUCAGGGUUCGAU2000090551UCCGGAGA2000090551GGGAGCCUGAGAAACGGCUACCACAU2000090551CCAAGG2000090551AAGGCAGCAGGCGCGC2000090551AAAUUACCCACUCCCGACCCGGGGA2000090551GGU2000090551AGUGA2000090551CGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACU2000009551UUAA2000090551AUCCUUUAACGAGG2000090551AUCCAUUGGAG2000090551GGCAAGUC2000009551UGGUGCCAGCAGCCGCGG2000090551UAAUUCCAGCUCCAAUA2000090551GCGUA2000009551UA2000009551UUAAAGUUGCUGCAGUU2000090551AAAAAGCUCGUAG2000009551UU2000090551GGA2000009551UCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAG2000090551CG2000090551UU2000009551UACUUUGAAAAAA2000009551U2000009551UAGAGUG2000009551UUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAA2000009551UAA2000009551U2000090551GGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAU2000009551UAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAU2000009551UCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUU2000009551UGCCAAGAAUGUUUUCAUUAAUCAAGA2000090551ACGAAAGUCGGAGGUUCGAAGACGA2000009551UCAGAUACCGUCGUAGUUCCGACCA2000009551UAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUA2000009551UGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGC2000009551UUAAUU2000009551UGAC2001309551UCAACACGGGAAACCUCACCCGGC2000090551CCGGACACGGACAGGA2000090551UUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGG2000909551UG2000090551GUGCAUGGCCGUUCUUAGU2000009551UGGUGGAGCGAUUUGUCUGG2000009551UUAAUUCCGAUAACGA2000090551ACGAGACU2000090551CUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACU2000090551UCU2000009551UAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACA2000090551GGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAU2000009551UCCCCAUGAACGAG2000007551GAAU2000009551UCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUU2000090551AAGUCCCUGCCCUU2000009551UGUACACACCG2000090551CCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACU2000090551UGACUAUCUAGAGGAAGUAAAAGUCGUA2000006551ACAAGGUUUCCGUAGGUG2000066551A2000066551ACCUGCGGAAGGAUCAUUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 26 33 35 92 98 104 108 115 118 120 158 165 171 173 209 217 405 427 435 461 467 483 508 511 516 571 575 589 600 608 626 643 648 650 667 680 682 685 796 798 800 813 814 821 862 865 866 917 965 1003 1030 1055 1080 1173 1237 1243 1247 1271 1287 1325 1327 1346 1366 1382 1390 1441 1444 1489 1624 1638 1642 1677 1691 1702 1803 1831 1849 1850
Modification positions pAm pY pY pY pAm pY pY pUm pY pUm pAm pAm pUm pCm pY pY pY pUm pGm pCm pAm pAm pGm pAm pCm pY pAm pAm pGm pY pUm pGm pY pY pAm pY pGm pY pCm pUm pY pY pY pY pY pY pGm pY pY pY pAm pY pY pY pY pY pm1acp3Y pCm pUm pYm pGm pY pY pAm pCm pUm pY pGm pY pm7G pY pAm pY pCm pUm pm6A pm6,6A pm6,6A
Level of Experimental Evidence 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS