Modomics - A Database of RNA Modifications

General Data

RNA Type	rRNA
Original Source	KY962518.1
Sequence (UNICHARACTER ENCODING)	UACCUGGUUGAUCCUGCCAGUAGCAUʍUGCUUGPCPCAAAGAUUAAGCCAUGCAUGUCUAAGPACGCACGGCCGGUACAGUGAAACUGCGAAPGGCUCʍ PUAAAPCAGPUAUGGUJCCPUJGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUAʍUUCUAGʍGCJAAJABAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAPGCGUGCAPUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCPAGAPAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCUAACGUCJGCCCUAUCAACPUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGPGACGGGGAAUCAGGGUUCGAUJCCGGAGA#GGAGCCUGAGAAACGGCUACCACAUBCAAGGʍAGGCAGCAGGCGCGCʍAAUUACCCACUCCCGACCCGGGGA#GUʍGPGABGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAPUGGAAUGAGUCCACUPUAAʍUCCUUUAACGAGGʍUCCAUUGGAG#GCAAGUCPGGUGCCAGCAGBCGCGGJAAUUCCAGCUCCAAUA#CGUAPAPUAAAGUUGCUGCAGUP ʍAAAAGCUCGUAGPU#GAPCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCP PAGCUGAGUGUCCCGCGGGGCCCGAAGBGJUPACPUUGAAAAAAP PAGAGUGPUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAAPAAP #GAAUAGGACCGCGGUUCUAUUUUGUUGGUPUUCGGAACUGAGGCCAUGAUPAAGAGGGACGGCCGGGGGCAUUCCGUAUUGCGCGCUAGAGGUGAAAUPCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUPUGCCAAGAAUGUUUUCAUUAAUCAAGAʍCGAAAGUCGGAGGP PCGAAGACGAPCAGAPACCGUCGUAGUUCCGACCAPAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCPUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAPGGPUGCAAAGCPGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCPGCGGCPUAAUUPGACαCAACACGGGAAACCUCACCCGGCBCGGACACGGACAGGAJUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGJG#UGCAUGGCMGUUCUUAGUPGGUGGAGCGAUUPGUCUGGPUAAUUCCGAUAACGAʍCGAGACUBUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAABUJCUPA#AGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACA#GUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUPCGUGAUGGGGAUCGGGGAUUGCAAUUAUPCCCCAUGAACGAG7AAUPCCCAGUAAGUGCGGGUCAUAAGCUJGCGUUGAUUʍAGUCCCUGCCCUUPGUACACACCGBCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUJGACUAUCUAGAGGAAGUAAAAGUCGUAЖCAAGGUPUCMGUAGGUGζ ζCCUGCGGAAGGAUCAUUA
Sequence (SHORT NAMES ENCODING)	UACCUGGUUGAUCCUGCCAGUAGCAUpAmUGCUUGpYCpYCAAAGAUUAAGCCAUGCAUGUCUAAGpYACGCACGGCCGGUACAGUGAAACUGCGAApYGGCUCpAm pYUAAApYCAGpYUAUGGUpUmCCpYUpUmGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUApAmUUCUAGpAmGCpUmAApUmApCmAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGApYGCGUGCApYUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCpYAGApYAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCUAACGUCpUmGCCCUAUCAACpYUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGpYGACGGGGAAUCAGGGUUCGAUpUmCCGGAGApGmGGAGCCUGAGAAACGGCUACCACAUpCmCAAGGpAmAGGCAGCAGGCGCGCpAmAAUUACCCACUCCCGACCCGGGGApGmGUpAmGpYGApCmGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAApYUGGAAUGAGUCCACUpYUAApAmUCCUUUAACGAGGpAmUCCAUUGGAGpGmGCAAGUCpYGGUGCCAGCAGpCmCGCGGpUmAAUUCCAGCUCCAAUApGmCGUApYApYUAAAGUUGCUGCAGUpY pAmAAAAGCUCGUAGpYUpGmGApYCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCpY pYAGCUGAGUGUCCCGCGGGGCCCGAAGpCmGpUmUpYACpYUUGAAAAAApY pYAGAGUGpYUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAApYAApY pGmGAAUAGGACCGCGGUUCUAUUUUGUUGGUpYUUCGGAACUGAGGCCAUGAUpYAAGAGGGACGGCCGGGGGCAUUCCGUAUUGCGCGCUAGAGGUGAAAUpYCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUpYUGCCAAGAAUGUUUUCAUUAAUCAAGApAmCGAAAGUCGGAGGpY pYCGAAGACGApYCAGApYACCGUCGUAGUUCCGACCApYAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCpYUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUApYGGpYUGCAAAGCpYGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCpYGCGGCpYUAAUUpYGACpm1acp3YCAACACGGGAAACCUCACCCGGCpCmCGGACACGGACAGGApUmUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGpUmGpGmUGCAUGGCpac4CGUUCUUAGUpYGGUGGAGCGAUUpYGUCUGGpYUAAUUCCGAUAACGApAmCGAGACUpCmUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAApCmUpUmCUpYApGmAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACApGmGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUpYCGUGAUGGGGAUCGGGGAUUGCAAUUAUpYCCCCAUGAACGAGpm7GAAUpYCCCAGUAAGUGCGGGUCAUAAGCUpUmGCGUUGAUUpAmAGUCCCUGCCCUUpYGUACACACCGpCmCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUpUmGACUAUCUAGAGGAAGUAAAAGUCGUApm6ACAAGGUpYUCpac4CGUAGGUGpm6,6A pm6,6ACCUGCGGAAGGAUCAUUA
Sequence (MODOMICS CODE ENCODING)	UACCUGGUUGAUCCUGCCAGUAGCAU2000090551AUGCUUG2000009551UC2000009551UCAAAGAUUAAGCCAUGCAUGUCUAAG2000009551UACGCACGGCCGGUACAGUGAAACUGCGAA2000009551UGGCUC2000090551A 2000009551UUAAA2000009551UCAG2000009551UUAUGGU2000090551UCC2000009551UU2000090551UGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUA2000090551AUUCUAG2000090551AGC2000090551UAA2000090551UA2000090551CAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGA2000009551UGCGUGCA2000009551UUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUC2000009551UAGA2000009551UAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCUAACGUC2000090551UGCCCUAUCAAC2000009551UUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGG2000009551UGACGGGGAAUCAGGGUUCGAU2000090551UCCGGAGA2000090551GGGAGCCUGAGAAACGGCUACCACAU2000090551CCAAGG2000090551AAGGCAGCAGGCGCGC2000090551AAAUUACCCACUCCCGACCCGGGGA2000090551GGU2000090551AG2000009551UGA2000090551CGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAA2000009551UUGGAAUGAGUCCACU2000009551UUAA2000090551AUCCUUUAACGAGG2000090551AUCCAUUGGAG2000090551GGCAAGUC2000009551UGGUGCCAGCAG2000090551CCGCGG2000090551UAAUUCCAGCUCCAAUA2000090551GCGUA2000009551UA2000009551UUAAAGUUGCUGCAGU2000009551U 2000090551AAAAAGCUCGUAG2000009551UU2000090551GGA2000009551UCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUC2000009551U 2000009551UAGCUGAGUGUCCCGCGGGGCCCGAAG2000090551CG2000090551UU2000009551UAC2000009551UUUGAAAAAA2000009551U 2000009551UAGAGUG2000009551UUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAA2000009551UAA2000009551U 2000090551GGAAUAGGACCGCGGUUCUAUUUUGUUGGU2000009551UUUCGGAACUGAGGCCAUGAU2000009551UAAGAGGGACGGCCGGGGGCAUUCCGUAUUGCGCGCUAGAGGUGAAAU2000009551UCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAU2000009551UUGCCAAGAAUGUUUUCAUUAAUCAAGA2000090551ACGAAAGUCGGAGG2000009551U 2000009551UCGAAGACGA2000009551UCAGA2000009551UACCGUCGUAGUUCCGACCA2000009551UAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGC2000009551UUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUA2000009551UGG2000009551UUGCAAAGC2000009551UGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCC2000009551UGCGGC2000009551UUAAUU2000009551UGAC2001309551UCAACACGGGAAACCUCACCCGGC2000090551CCGGACACGGACAGGA2000090551UUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGG2000090551UG2000090551GUGCAUGGC2000042551CGUUCUUAGU2000009551UGGUGGAGCGAUU2000009551UGUCUGG2000009551UUAAUUCCGAUAACGA2000090551ACGAGACU2000090551CUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAA2000090551CU2000090551UCU2000009551UA2000090551GAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACA2000090551GGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAU2000009551UCGUGAUGGGGAUCGGGGAUUGCAAUUAU2000009551UCCCCAUGAACGAG2000007551GAAU2000009551UCCCAGUAAGUGCGGGUCAUAAGCU2000090551UGCGUUGAUU2000090551AAGUCCCUGCCCUU2000009551UGUACACACCG2000090551CCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACU2000090551UGACUAUCUAGAGGAAGUAAAAGUCGUA2000006551ACAAGGU2000009551UUC2000042551CGUAGGUG2000066551A 2000066551ACCUGCGGAAGGAUCAUUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and
evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered
as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors
should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected.
Class 4 is considered as questionable. Class 5 evidence means that
verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences.
Edit locations not originally present in the RNA sequences are marked by their source.
Their scores are in third row.}

Position in the sequence	26	33	35	62	92	98	99	104	108	115	118	120	158	165	168	171	173	209	217	295	299	353	365	405	427	435	461	467	483	508	511	513	516	555	571	575	589	600	608	620	626	643	648	650	666	667	680	682	685	768	769	796	798	800	803	813	814	821	862	865	866	896	917	965	1002	1030	1044	1045	1055	1060	1080	1135	1173	1176	1185	1231	1237	1243	1247	1271	1287	1325	1327	1336	1346	1359	1366	1382	1390	1439	1441	1444	1446	1489	1595	1624	1638	1642	1667	1677	1691	1702	1803	1831	1838	1841	1849	1850
Modification positions	pAm	pY	pY	pY	pY	pAm	pY	pY	pY	pUm	pY	pUm	pAm	pAm	pUm	pUm	pCm	pY	pY	pY	pY	pUm	pY	pY	pUm	pGm	pCm	pAm	pAm	pGm	pAm	pY	pCm	pY	pY	pAm	pAm	pGm	pY	pCm	pUm	pGm	pY	pY	pY	pAm	pY	pGm	pY	pY	pY	pCm	pUm	pY	pY	pY	pY	pY	pY	pY	pGm	pY	pY	pY	pY	pAm	pY	pY	pY	pY	pY	pY	pY	pY	pY	pY	pY	pY	pm1acp3Y	pCm	pUm	pUm	pGm	pac4C	pY	pY	pY	pAm	pCm	pCm	pUm	pY	pGm	pGm	pY	pY	pm7G	pY	pUm	pAm	pY	pCm	pUm	pm6A	pY	pac4C	pm6,6A	pm6,6A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS