Modomics - A Database of RNA Modifications

ID Card:

Full name: RNA pseudouridylate synthase domain-containing protein 1
Synonym: RPUSD1
UniProt: Q9UJJ7
Structures: | 5VBB |
Alpha Fold Predicted Structure: AF-Q9UJJ7-F1
Enzyme type: isomerase


PDB Structures:


5VBB

Structure Description:

Title:
Classification:
Technique:

Abstract of the PDB Structure's related Publication:

Yet to be published

Download RCSB-PDB Structures:

Pdb Files   5VBB.pdb  
Pdbx/mmCIF Files   5VBB.cif  


Protein sequence:

MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRNSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSPHTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCLQWLSEWTLEPDS

Comments:





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M E P G S V E N L S I V Y R S R D F L V V N K H W D V R I D S K A W R E T L T L Q K Q L R Y R F P E L A D P D T C Y G F R F C H Q L D F S T S G A L C V A L N K A A A G S A Y R C F K E R R V T K A Y L A L L R G H I Q E S R V T I S H A I G R N S T E G R A H T M C I E G S Q G C E N P K P S L T D L V V L E H G L Y A G D P V S K V L L K P L T G R T H Q L R V H C S A L G H P V V G D L T Y G E V S G R E D R P F R M M L H A F Y L R I P T D T E C V E V C T P D P F L P S L D A C W S P H T L L Q S L D Q L V Q A L R A T P D P D P E D R G P R P G S P S A L L P G P G R P P P P P T K P P E T E A Q R G P C L Q W L S E W T L E P D S

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q9UJJ7-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q9UJJ7-F1.cif  
DSSP Secondary Structures   Q9UJJ7.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
Eukaryotic stand-alone pseudouridine synthases – RNA modifying enzymes and emerging regulators of gene expression? Anne C. Rintala-Dempsey and Ute Kothe [details] 28045575 10.1080/15476286.2016.1276150