Modomics - A Database of RNA Modifications

ID Card:

Full name: O-sialoglycoprotein endopeptidase - Probable tRNA N6-adenosine threonylcarbamoyltransferase
Synonym: PRSMG1 GCPL1 OSGEP1 KAE1 TCS3
GI: 47605574
UniProt: Q9NPF4
Structures: | 6GWJ |
Alpha Fold Predicted Structure: AF-Q9NPF4-F1
Enzyme type: endopeptidase


PDB Structures:


6GWJ

Structure Description:

Title:
Classification:
Technique:

Abstract of the PDB Structure's related Publication:

N 6 -threonyl-carbamoylation of adenosine 37 of ANN-type tRNAs (t 6 A) is a universal modification essential for translational accuracy and efficiency. The t 6 A pathway uses two sequentially acting enzymes, YRDC and OSGEP, the latter being a subunit of the multiprotein KEOPS complex. We recently identified mutations in genes encoding four out of the five KEOPS subunits in children with Galloway-Mowat syndrome (GAMOS), a clinically heterogeneous autosomal recessive disease characterized by early-onset steroid-resistant nephrotic syndrome and microcephaly. Here we show that mutations in YRDC cause an extremely severe form of GAMOS whereas mutations in GON7, encoding the fifth KEOPS subunit, lead to a milder form of the disease. The crystal structure of the GON7/LAGE3/OSGEP subcomplex shows that the intrinsically disordered GON7 protein becomes partially structured upon binding to LAGE3. The structure and cellular characterization of GON7 suggest its involvement in the cellular stability and quaternary arrangement of the KEOPS complex.

Download RCSB-PDB Structures:

Pdb Files   6GWJ.pdb  
Pdbx/mmCIF Files   6GWJ.cif  


Protein sequence:

MPAVLGFEGSANKIGVGVVRDGKVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEALTESGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTVAQLWNKPLVGVNHCIGHIEMGRLITGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNIEQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAHRMLATGECTPEDLCFSLQETVFAMLVEITERAMAHCGSQEALIVGGVGCNVRLQEMMATMCQERGARLFATDERFCIDNGAMIAQAGWEMFRAGHRTPLSDSGVTQRYRTDEVEVTWRD

Comments:





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M P A V L G F E G S A N K I G V G V V R D G K V L A N P R R T Y V T P P G T G F L P G D T A R H H R A V I L D L L Q E A L T E S G L T S Q D I D C I A Y T K G P G M G A P L V S V A V V A R T V A Q L W N K P L V G V N H C I G H I E M G R L I T G A T S P T V L Y V S G G N T Q V I A Y S E H R Y R I F G E T I D I A V G N C L D R F A R V L K I S N D P S P G Y N I E Q M A K R G K K L V E L P Y T V K G M D V S F S G I L S F I E D V A H R M L A T G E C T P E D L C F S L Q E T V F A M L V E I T E R A M A H C G S Q E A L I V G G V G C N V R L Q E M M A T M C Q E R G A R L F A T D E R F C I D N G A M I A Q A G W E M F R A G H R T P L S D S G V T Q R Y R T D E V E V T W R D

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q9NPF4-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q9NPF4-F1.cif  
DSSP Secondary Structures   Q9NPF4.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
The human EKC/KEOPS complex is recruited to Cullin2 ubiquitin ligases by the human tumour antigen PRAME. Costessi A, Mahrour N, Sharma V, Stunnenberg R, Stoel MA, Tijchon E, Conaway JW, Conaway RC, Stunnenberg HG... PLoS One [details] 22912744 -
tRNA N6-adenosine threonylcarbamoyltransferase defect due to KAE1/TCS3 (OSGEP) mutation manifest by neurodegeneration and renal tubulopathy. Edvardson S, Prunetti L, Arraf A, Haas D, Bacusmo JM, Hu JF, Ta-Shma A, Dedon PC, de Crecy-Lagard V, Elpeleg O... Eur J Hum Genet [details] 28272532 -