Modomics - A Database of RNA Modifications

ID Card:

Full name: Elongator complex protein 1
Synonym: IKAP, TOT1, IKI3
GI: 215274166
UniProt: O95163
Structures: | 5CQR |
Alpha Fold Predicted Structure: AF-O95163-F1
Enzyme type:


PDB Structures:


5CQR

Structure Description:

Title:
Classification:
Technique:

Abstract of the PDB Structure's related Publication:

The evolutionarily conserved Elongator complex, which is composed of six subunits elongator protein 1 (Elp1 to -6), plays vital roles in gene regulation. The molecular hallmark of familial dysautonomia (FD) is the splicing mutation of Elp1 [also known as IκB kinase complex-associated protein (IKAP)] in the nervous system that is believed to be the primary cause of the devastating symptoms of this disease. Here, we demonstrate that disease-related mutations in Elp1 affect Elongator assembly, and we have determined the structure of the C-terminal portion of human Elp1 (Elp1-CT), which is sufficient for full-length Elp1 dimerization, as well as the structure of the cognate dimerization domain of yeast Elp1 (yElp1-DD). Our study reveals that the formation of the Elp1 dimer contributes to its stability in vitro and in vivo and is required for the assembly of both the human and yeast Elongator complexes. Functional studies suggest that Elp1 dimerization is essential for yeast viability. Collectively, our results identify the evolutionarily conserved dimerization domain of Elp1 and suggest that the pathological mechanisms underlying the onset and progression of Elp1 mutation-related disease may result from impaired Elongator activities.

Download RCSB-PDB Structures:

Pdb Files   5CQR.pdb  
Pdbx/mmCIF Files   5CQR.cif  


Protein sequence:

MRNLKLFRTLEFRDIQGPGNPQCFSLRTEQGTVLIGSEHGLIEVDPVSREVKNEVSLVAEGFLPEDGSGRIVGVQDLLDQESVCVATASGDVILCSLSTQQLECVGSVASGISVMSWSPDQELVLLATGQQTLIMMTKDFEPILEQQIHQDDFGESKFITVGWGRKETQFHGSEGRQAAFQMQMHESALPWDDHRPQVTWRGDGQFFAVSVVCPETGARKVRVWNREFALQSTSEPVAGLGPALAWKPSGSLIASTQDKPNQQDIVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSSVLAVWLEDLQREESSIPKTCVQLWTVGNYHWYLKQSLSFSTCGKSKIVSLMWDPVTPYRLHVLCQGWHYLAYDWHWTTDRSVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLFPHPVNQVTFLAHPQKSNDLAVLDASNQISVYKCGDCPSADPTVKLGAVGGSGFKVCLRTPHLEKRYKIQFENNEDQDVNPLKLGLLTWIEEDVFLAVSHSEFSPRSVIHHLTAASSEMDEEHGQLNVSSSAAVDGVIISLCCNSKTKSVVLQLADGQIFKYLWESPSLAIKPWKNSGGFPVRFPYPCTQTELAMIGEEECVLGLTDRCRFFINDIEVASNITSFAVYDEFLLLTTHSHTQCFCLRDASFKTLQAGLSSNHVSHGEVLRKVERGSRIVTVVPQDTKLVLQMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDHNPKVFLGNVETFIKQIDSVNHINLFFTELKEEDVTKTMYPAPVTSSVYLSRDPDGNKIDLVCDAMRAVMESINPHKYCLSILTSHVKKTTPELEIVLQKVHELQGNAPSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKDKNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRKHIDAAMVLEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLDIIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGLDDEVPHGQESDLFSETSSVVSGSEMSGKYSHSNSRISARSSKNRRKAERKKHSLKEGSPLEDLALLEALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFEDTLQLMERSLPEIWTLTYQQNSATPVLGPNSTANSIMASYQQQKTSVPVLDAELFIPPKINRRTQWKLSLLD

Comments:





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M R N L K L F R T L E F R D I Q G P G N P Q C F S L R T E Q G T V L I G S E H G L I E V D P V S R E V K N E V S L V A E G F L P E D G S G R I V G V Q D L L D Q E S V C V A T A S G D V I L C S L S T Q Q L E C V G S V A S G I S V M S W S P D Q E L V L L A T G Q Q T L I M M T K D F E P I L E Q Q I H Q D D F G E S K F I T V G W G R K E T Q F H G S E G R Q A A F Q M Q M H E S A L P W D D H R P Q V T W R G D G Q F F A V S V V C P E T G A R K V R V W N R E F A L Q S T S E P V A G L G P A L A W K P S G S L I A S T Q D K P N Q Q D I V F F E K N G L L H G H F T L P F L K D E V K V N D L L W N A D S S V L A V W L E D L Q R E E S S I P K T C V Q L W T V G N Y H W Y L K Q S L S F S T C G K S K I V S L M W D P V T P Y R L H V L C Q G W H Y L A Y D W H W T T D R S V G D N S S D L S N V A V I D G N R V L V T V F R Q T V V P P P M C T Y Q L L F P H P V N Q V T F L A H P Q K S N D L A V L D A S N Q I S V Y K C G D C P S A D P T V K L G A V G G S G F K V C L R T P H L E K R Y K I Q F E N N E D Q D V N P L K L G L L T W I E E D V F L A V S H S E F S P R S V I H H L T A A S S E M D E E H G Q L N V S S S A A V D G V I I S L C C N S K T K S V V L Q L A D G Q I F K Y L W E S P S L A I K P W K N S G G F P V R F P Y P C T Q T E L A M I G E E E C V L G L T D R C R F F I N D I E V A S N I T S F A V Y D E F L L L T T H S H T Q C F C L R D A S F K T L Q A G L S S N H V S H G E V L R K V E R G S R I V T V V P Q D T K L V L Q M P R G N L E V V H H R A L V L A Q I R K W L D K L M F K E A F E C M R K L R I N L N L I Y D H N P K V F L G N V E T F I K Q I D S V N H I N L F F T E L K E E D V T K T M Y P A P V T S S V Y L S R D P D G N K I D L V C D A M R A V M E S I N P H K Y C L S I L T S H V K K T T P E L E I V L Q K V H E L Q G N A P S D P D A V S A E E A L K Y L L H L V D V N E L Y D H S L G T Y D F D L V L M V A E K S Q K D P K E Y L P F L N T L K K M E T N Y Q R F T I D K Y L K R Y E K A I G H L S K C G P E Y F P E C L N L I K D K N L Y N E A L K L Y S P S S Q Q Y Q D I S I A Y G E H L M Q E H M Y E P A G L M F A R C G A H E K A L S A F L T C G N W K Q A L C V A A Q L N F T K D Q L V G L G R T L A G K L V E Q R K H I D A A M V L E E C A Q D Y E E A V L L L L E G A A W E E A L R L V Y K Y N R L D I I E T N V K P S I L E A Q K N Y M A F L D S Q T A T F S R H K K R L L V V R E L K E Q A Q Q A G L D D E V P H G Q E S D L F S E T S S V V S G S E M S G K Y S H S N S R I S A R S S K N R R K A E R K K H S L K E G S P L E D L A L L E A L S E V V Q N T E N L K D E V Y H I L K V L F L F E F D E Q G R E L Q K A F E D T L Q L M E R S L P E I W T L T Y Q Q N S A T P V L G P N S T A N S I M A S Y Q Q Q K T S V P V L D A E L F I P P K I N R R T Q W K L S L L D

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-O95163-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-O95163-F1.cif  
DSSP Secondary Structures   O95163.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
Purification and characterization of the human elongator complex. Hawkes NA, Otero G, Winkler GS, Marshall N, Dahmus ME, Krappmann D, Scheidereit C, Thomas CL, Schiavo G, Erdjument-Bromage H, Tempst P, Svejstrup JQ... J Biol Chem [details] 11714725 -