Characterization of G-quadruplex formation in the ARID1A promoter
Overview of Yan T et al.
Authors | Yan T Zhao B Wu Q Wang W Shi J Li D Stovall DB Sui G |
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Affiliation | Key Laboratory of Saline-alkali Vegetation Ecology Restoration Ministry of Education College of Life Science Northeast Forestry University Harbin 150040 China. Electronic address: gcsui@nefu.edu.cn. |
Journal | Int J Biol Macromol |
Year | 2020 |
Abstract
As a member of the SWI/SNF family, ARID1A plays an essential role in modulating chromatin structure and gene expression. The tumor suppressive function of ARID1A has been well-defined and its downregulation in cancers is attributed to genomic deletion, DNA methylation and microRNA-mediated inhibition. In this study, we demonstrated that the negative strand of a C-rich region in the upstream vicinity of the human ARID1A transcription start site could form G-quadruplexes. Synthesized oligonucleotides based on the sequence of this region exhibited molar ellipticity at specific wavelengths characteristic of G-quadruplex structures in circular dichroism analyses. The formation of G-quadruplexes by these oligonucleotides were also proved by native polyacrylamide gel electrophoresis, DNA synthesis block assays, immunofluorescent staining and dimethyl sulfate footprinting studies. In reporter assays, mutations of the G-quadruplex forming sequence reduced ARID1A promoter-mediated transcription. Transfection of the oligonucleotide with the full length of G-quadruplex motif region, but not its partial sequences or the mutants, could both promote endogenous ARID1A expression and reduce cell proliferation.