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Characterization of G-quadruplex formation in the ARID1A promoter

Overview of Yan T et al.

AuthorsYan T  Zhao B  Wu Q  Wang W  Shi J  Li D  Stovall DB  Sui G  
AffiliationKey Laboratory of Saline-alkali Vegetation Ecology Restoration   Ministry of Education   College of Life Science   Northeast Forestry University   Harbin 150040   China. Electronic address: gcsui@nefu.edu.cn.  
JournalInt J Biol Macromol
Year 2020

Abstract


As a member of the SWI/SNF family, ARID1A plays an essential role in modulating chromatin structure and gene expression. The tumor suppressive function of ARID1A has been well-defined and its downregulation in cancers is attributed to genomic deletion, DNA methylation and microRNA-mediated inhibition. In this study, we demonstrated that the negative strand of a C-rich region in the upstream vicinity of the human ARID1A transcription start site could form G-quadruplexes. Synthesized oligonucleotides based on the sequence of this region exhibited molar ellipticity at specific wavelengths characteristic of G-quadruplex structures in circular dichroism analyses. The formation of G-quadruplexes by these oligonucleotides were also proved by native polyacrylamide gel electrophoresis, DNA synthesis block assays, immunofluorescent staining and dimethyl sulfate footprinting studies. In reporter assays, mutations of the G-quadruplex forming sequence reduced ARID1A promoter-mediated transcription. Transfection of the oligonucleotide with the full length of G-quadruplex motif region, but not its partial sequences or the mutants, could both promote endogenous ARID1A expression and reduce cell proliferation.