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Structural property and enzymatic response of oxanine in DNA strands

Overview of Pack SP et al.

AuthorsPack SP  Doi A  Nonogawa M  Kamisetty NK  Devarayapalli KC  Kodaki T  Makino K  
AffiliationInstitute of Advanced Energy   Kyoto University   Gokasho   Uji 611-0011   Japan.  
JournalNucleic Acids Symp Ser (Oxf)
Year 2006

Abstract


Oxanine (Oxa, O), one of the major products generated from guanine (Gua) by nitrosative oxidation has been expected as mutagenic lesion involved in NO- or HNO(2) -induced genotoxicity. Here, to elucidate the biological meaning of Oxa in DNA strands, several kinds of Oxa-containing oligodeoxynucleotides (Oxa-ODNs) were synthesized and applied to biophysical and biochemical characterization. CD and NMR analyses revealed that the conformations of all the Oxa-containing duplexes are basically B-type without causing any severe distortion in the whole DNA structure. It was also determined that restriction endonucleases recognize and cleave the specific base-sequence even when Gua was substituted by Oxa in the sequence. When Oxa-ODN was testified as substrates for other DNA-relevant enzymes, the enzymatic functions were not largely affected by Oxa.