On this page you can query RNA Bricks with RNA 3D structure fragments (up to 40 nucleotides). The query structure can be either covered with or matched within the RNA motifs from the database.
Email: E-mail me when you are done
Title: Here you can shortly describe your query
Qurey PDB file: send the *.pdb or *.pdb.gz file
Query PDB text: paste PDB contents to this field
Query residues: Ignore 124d 157d 165d 176d 17ra 1a1t 1a34 1a3m 1a4d 1a4t 1a51 1a60 1a9l 1a9n 1ac3 1afx 1ajf 1ajl 1ajt 1aju 1akx 1al5 1am0 1anr 1aq3 1aq4 1aqo 1arj 1asy 1asz 1ato 1atv 1atw 1aud 1av6 1b23 1b2m 1b36 1b7f 1bau 1biv 1bj2 1bmv 1bn0 1bvj 1byj 1bz2 1bz3 1bzt 1bzu 1c04 1c0a 1c0o 1c2q 1c2w 1c2x 1c4l 1c9s 1cq5 1cql 1csl 1cvj 1cwp 1cx5 1d0t 1d0u 1d4r 1ddl 1ddy 1dfu 1di2 1dk1 1dqf 1dqh 1drr 1duh 1dul 1duq 1dz5 1e4p 1e7k 1e8o 1e95 1ebq 1ebr 1ebs 1ec6 1efo 1efs 1efw 1egk 1eht 1ehz 1ei2 1eiy 1ejz 1eka 1ekd 1ekz 1elh 1esh 1esy 1et4 1etf 1etg 1euq 1euy 1evv 1exd 1exy 1f1t 1f27 1f5g 1f5h 1f5u 1f6u 1f6x 1f6z 1f78 1f79 1f7f 1f7g 1f7h 1f7i 1f7u 1f7v 1f7y 1f84 1f85 1f8v 1f9l 1fcw 1feq 1feu 1ffk 1ffy 1fg0 1fhk 1fir 1fix 1fje 1fjg 1fka 1fl8 1fmn 1fnx 1foq 1fuf 1fxl 1fyo 1fyp 1g1x 1g2e 1g2j 1g4q 1g59 1g70 1gax 1gid 1grz 1gtf 1gtn 1gtr 1gts 1guc 1h0q 1h1k 1h2c 1h2d 1h38 1h3e 1h4q 1h4s 1hc8 1hg9 1hji 1hlx 1hmh 1hnw 1hnx 1hnz 1hq1 1hr0 1hr2 1hs1 1hs3 1hs4 1hs8 1hvu 1hwq 1hys 1i3x 1i3y 1i46 1i4b 1i4c 1i5l 1i6h 1i6u 1i94 1i95 1i96 1i97 1i9f 1i9v 1i9x 1ibk 1ibl 1ibm 1ie1 1ie2 1ik5 1ikd 1il2 1ivs 1j1u 1j2b 1j4y 1j5a 1j5e 1j6s 1j7t 1j8g 1j9h 1jb8 1jbr 1jbs 1jbt 1jgo 1jgp 1jgq 1jid 1jzv 1jzx 1jzy 1jzz 1k01 1k4a 1k4b 1k6g 1k6h 1k8s 1k8w 1k9w 1kaj 1kd3 1kd4 1kd5 1kfo 1kh6 1kis 1kka 1kks 1knz 1koc 1kod 1kog 1kos 1kp7 1kpd 1kpy 1kpz 1kq2 1kuq 1kxk 1l1c 1l1w 1l2x 1l3d 1l3z 1l8v 1l9a 1laj 1lc4 1lc6 1ldz 1lmv 1lng 1lnt 1lu3 1luu 1lux 1lvj 1m5k 1m5l 1m5o 1m5p 1m5v 1m82 1m8v 1m8w 1m8x 1m8y 1mdg 1me1 1mfj 1mfk 1mfq 1mhk 1mis 1mji 1ml5 1mme 1mms 1mnx 1msw 1msy 1mt4 1muv 1mv1 1mv2 1mv6 1mwg 1mwl 1my9 1mzp 1n1h 1n32 1n33 1n34 1n35 1n36 1n38 1n66 1n77 1n78 1n8x 1na2 1nb7 1nbk 1nbr 1nbs 1nc0 1nem 1njm 1njn 1njo 1njp 1nkw 1nlc 1nta 1ntb 1ntq 1nts 1ntt 1nuj 1nuv 1nwx 1nwy 1nxr 1nyb 1nyi 1nz1 1o0b 1o0c 1o15 1o3z 1o9m 1ob2 1ob5 1okf 1oln 1ond 1oo7 1ooa 1oq0 1osu 1osw 1ow9 1p5m 1p5n 1p5o 1p5p 1p6v 1p79 1p9x 1pbm 1pbr 1pgl 1pjg 1pjo 1pjy 1pvo 1q29 1q2r 1q2s 1q8n 1q93 1q96 1q9a 1qa6 1qbp 1qc0 1qc8 1qd3 1qes 1qet 1qf6 1qfq 1qln 1qrs 1qrt 1qru 1qtq 1qu2 1qu3 1qwa 1qwb 1qzw 1r2p 1r3e 1r3x 1r4h 1r7w 1r7z 1r9f 1r9s 1r9t 1rau 1raw 1rc7 1rfr 1rgo 1rht 1rkj 1rlg 1rmn 1rmv 1rna 1rng 1rnk 1roq 1rpu 1rrd 1rrr 1rxa 1rxb 1ry1 1s03 1s0v 1s2f 1s34 1s72 1s76 1s77 1s9s 1sa9 1saq 1scl 1sdr 1sds 1ser 1sfo 1si3 1sj3 1sj4 1sjf 1slo 1slp 1sm1 1sy4 1syz 1sz1 1t0d 1t0e 1t0k 1t28 1t2r 1t4l 1tbk 1tfn 1tfw 1tfy 1tjz 1tlr 1tn1 1tn2 1tob 1tra 1ttt 1tut 1txs 1u0b 1u1y 1u2a 1u3k 1u63 1u6b 1u6p 1u9s 1ull 1un6 1urn 1utd 1uts 1uud 1uuu 1uvi 1uvj 1uvk 1uvl 1uvm 1uvn 1vbx 1vby 1vbz 1vc0 1vc5 1vc6 1vfg 1vop 1vtq 1vvj 1vy4 1vy5 1vy7 1wks 1wmq 1wne 1wpu 1wrq 1wsu 1wtt 1wvd 1wwd 1wwe 1wwg 1wz2 1x8w 1x9c 1x9k 1xbp 1xhp 1xjr 1xmo 1xmq 1xnq 1xnr 1xok 1xp7 1xpe 1xpf 1xpo 1xpr 1xpu 1xsg 1xsh 1xst 1xv0 1xwp 1xwu 1y0q 1y1w 1y26 1y27 1y39 1y3o 1y3s 1y69 1y6s 1y6t 1y73 1y77 1y90 1y95 1y99 1yfg 1yfv 1yg3 1yg4 1ykq 1ykv 1ylg 1yls 1ymo 1yn1 1yn2 1ync 1yne 1yrj 1ysv 1ytu 1yty 1yvp 1yxp 1yy0 1yyk 1yyo 1yyw 1yz9 1yzd 1z2j 1z30 1z31 1z43 1z58 1z79 1z7f 1zbh 1zbi 1zbl 1zc5 1zci 1zdh 1zdi 1zdj 1zdk 1ze2 1zev 1zft 1zfv 1zfx 1zh5 1zho 1zif 1zig 1zih 1zjw 1zl3 1zo1 1zse 1zx7 1zz5 1zzn 205d 219d 255d 259d 280d 283d 28sp 28sr 299d 2a04 2a0p 2a1r 2a2e 2a43 2a64 2a8v 2a9l 2a9x 2aar 2ab4 2ad9 2adb 2adc 2adt 2aht 2ake 2ann 2anr 2ao5 2ap0 2ap5 2asb 2atw 2au4 2awe 2awq 2az0 2az2 2azx 2b2d 2b2e 2b2g 2b3j 2b57 2b63 2b6g 2b7g 2b8r 2b8s 2bbv 2bcy 2bcz 2be0 2bee 2bgg 2bh2 2bj2 2bj6 2bny 2bq5 2bs0 2bs1 2bte 2bu1 2bx2 2byt 2c06 2c0b 2c4q 2c4r 2c4y 2c4z 2c50 2c51 2cd1 2cd3 2cd5 2cd6 2cky 2csx 2ct8 2cv0 2cv1 2cv2 2czj 2d17 2d18 2d19 2d1a 2d1b 2d2k 2d2l 2d3o 2d6f 2db3 2dd1 2dd2 2dd3 2der 2det 2deu 2dlc 2dqo 2dqp 2dqq 2dr2 2dr5 2dr7 2dr8 2dr9 2dra 2drb 2du3 2du4 2du5 2du6 2dvi 2dxi 2e2h 2e2i 2e2j 2e5l 2e9r 2e9t 2e9z 2ec0 2ees 2eet 2eeu 2eev 2eew 2err 2es5 2ese 2esi 2esj 2et3 2et4 2et5 2et8 2euy 2evy 2ez6 2f4s 2f4t 2f4u 2f4v 2f87 2f88 2f8k 2f8s 2f8t 2fcx 2fcy 2fcz 2fd0 2fdt 2fey 2fgp 2fk6 2fmt 2fqn 2fy1 2fz2 2g1g 2g1w 2g3s 2g4b 2g5k 2g8f 2g8h 2g8i 2g8k 2g8u 2g8v 2g8w 2g91 2g92 2g9c 2gbh 2gcs 2gcv 2gdi 2gic 2gio 2gip 2gis 2gje 2gjw 2gm0 2go5 2grb 2grw 2gtt 2gun 2gv3 2gv4 2gvo 2gxb 2h0w 2h0x 2h1m 2h49 2hem 2hgh 2hhh 2hns 2ho6 2ho7 2hoj 2hok 2hol 2hom 2hoo 2hop 2ht1 2hua 2hvy 2hw8 2hyi 2i2y 2i7e 2i7z 2i82 2i91 2il9 2irn 2iro 2ix1 2ixy 2ixz 2iy5 2iz8 2iz9 2izm 2izn 2j0q 2j0s 2j28 2j37 2ja5 2ja6 2ja7 2ja8 2jea 2jlt 2jlu 2jlv 2jlw 2jlx 2jly 2jlz 2jpp 2jq7 2jr4 2jrg 2jrq 2jse 2jsg 2jtp 2juk 2jwv 2jxq 2jxs 2jxv 2jyf 2jyh 2jyj 2k3z 2k41 2k4c 2k5z 2k65 2k66 2k7e 2k95 2k96 2kbp 2kd8 2kdq 2ke6 2kez 2kfy 2kg0 2kg1 2kgp 2kh9 2khy 2km8 2kmj 2koc 2kp3 2kp4 2kpc 2kpd 2kpv 2krl 2krp 2krq 2krv 2krw 2kry 2krz 2ktz 2ku0 2kur 2kuu 2kuv 2kvn 2kx5 2kx8 2kxm 2kxn 2kxz 2ky0 2ky1 2ky2 2kye 2kzl 2l1f 2l1v 2l2j 2l2k 2l3c 2l3e 2l3j 2l41 2l5d 2l5z 2l6i 2l8c 2l8f 2l8h 2l8u 2l8w 2l94 2l9e 2la5 2lac 2lar 2lb4 2lbj 2lbk 2lbl 2lbq 2lbr 2lbs 2lc8 2ldl 2ldt 2ldz 2leb 2lec 2lhp 2li4 2li8 2ljj 2lk3 2lkr 2lp9 2lpa 2lps 2lpt 2lqz 2lu0 2lub 2lun 2lup 2lv0 2lvy 2lwk 2lx1 2m12 2m18 2m1o 2m21 2m22 2m23 2m24 2m4q 2m4w 2m57 2m58 2m5u 2m8d 2m8k 2mb0 2meq 2mer 2mf0 2mf1 2mfd 2mfe 2mff 2mfg 2mfh 2mgz 2mhi 2mi0 2mis 2miy 2mjh 2mki 2mkk 2mkn 2mn0 2mnc 2mqo 2mqp 2mqq 2mqt 2mqv 2ms0 2ms1 2ms5 2mtj 2mtk 2mtv 2mvs 2mvy 2mxj 2mxk 2mxl 2mxs 2mxy 2mz1 2n0j 2n0r 2n1q 2n2o 2n2p 2n3o 2n3q 2n3r 2n4l 2n6q 2n6s 2n6t 2n6w 2n6x 2n7c 2n7m 2n7x 2n82 2n8l 2n8m 2n8v 2nbx 2nby 2nbz 2nc0 2nc1 2nci 2ncq 2ncr 2nok 2noq 2npy 2npz 2nqp 2nr0 2nre 2nue 2nuf 2nug 2nvq 2nvt 2nvx 2nvz 2nz4 2o32 2o3v 2o3w 2o3x 2o3y 2o43 2o44 2o45 2o81 2o83 2oe5 2oe6 2oe8 2oeu 2ogm 2ogn 2ogo 2oih 2oij 2oiu 2oiy 2oj0 2oj3 2oj8 2om3 2om7 2oom 2oue 2ozb 2p7f 2p89 2pcv 2pcw 2pjp 2ply 2pn3 2pn4 2pn9 2po1 2pwt 2pxb 2pxd 2pxe 2pxf 2pxk 2pxl 2pxp 2pxq 2pxt 2pxu 2pxv 2py9 2q1o 2q1r 2q66 2qa4 2qbz 2qek 2qh2 2qh3 2qk9 2qkb 2qkk 2qqp 2qus 2quw 2qux 2qwy 2r1s 2r20 2r21 2r22 2r7r 2r7s 2r7t 2r7u 2r7v 2r7w 2r7x 2r7y 2r7z 2r8s 2r92 2r93 2rd2 2re8 2rfk 2rkj 2rlu 2rn1 2ro2 2rp0 2rp1 2rpk 2rpt 2rqc 2rqj 2rra 2rrc 2rs2 2rsk 2ru3 2ru7 2rvo 2tmv 2tob 2tpk 2tra 2uwm 2uxb 2uxd 2v0g 2v3c 2v6w 2v7r 2val 2vnu 2vod 2von 2voo 2vop 2vpl 2vrt 2vum 2vuq 2w2h 2w89 2wj8 2ww9 2wwa 2wwb 2wyy 2x1f 2x7n 2xb2 2xbm 2xc7 2xd0 2xdb 2xdd 2xea 2xeb 2xfm 2xgj 2xli 2xlj 2xlk 2xnr 2xnw 2xnz 2xo1 2xpj 2xs2 2xs5 2xs7 2xsl 2xxa 2xzl 2y8w 2y8y 2y95 2y9h 2ydh 2ygh 2yh1 2yhm 2yie 2yif 2yjy 2ykg 2ykr 2yu9 2zh1 2zh2 2zh3 2zh4 2zh5 2zh6 2zh7 2zh8 2zh9 2zha 2zhb 2zi0 2zjp 2zjq 2zjr 2zko 2zm5 2zm6 2zni 2zue 2zuf 2zxu 2zy6 2zzm 2zzn 300d 301d 333d 353d 354d 357d 359d 361d 364d 377d 379d 387d 397d 3a2k 3a3a 3a6p 3adb 3adc 3add 3adi 3adl 3aev 3agv 3ahu 3akz 3al0 3am1 3amt 3amu 3aoh 3aoi 3avt 3avu 3avv 3avw 3avx 3avy 3b0u 3b0v 3b31 3b4a 3b4b 3b4c 3b58 3b5a 3b5f 3b5s 3b91 3bbi 3bbk 3bbm 3bbv 3bbx 3bnl 3bnn 3bno 3bnp 3bnq 3bnr 3bns 3bnt 3bo0 3bo1 3bo2 3bo3 3boy 3bsb 3bsn 3bso 3bsu 3bsx 3bt7 3bwp 3bx2 3bx3 3c44 3cf5 3cgp 3cgq 3cgr 3cgs 3ciy 3cjz 3cul 3cun 3cw5 3cw6 3cz3 3czw 3d0m 3d0u 3d0x 3d2g 3d2s 3d2v 3d2x 3deg 3dh3 3dhs 3dig 3dil 3dim 3dio 3diq 3dir 3dis 3dix 3diy 3diz 3dj0 3dj2 3dkn 3dll 3ds7 3dvv 3dvz 3dw4 3dw5 3dw6 3dw7 3e2e 3e3j 3e5c 3e5e 3e5f 3egz 3eog 3eoh 3eph 3epj 3epk 3epl 3eqt 3er9 3ex7 3f2q 3f2t 3f2w 3f2x 3f2y 3f30 3f4e 3f4g 3f4h 3f73 3far 3fht 3fo4 3fo6 3foz 3fs0 3fte 3ftf 3ftm 3fu2 3fwo 3g0h 3g4m 3g78 3g8s 3g8t 3g96 3g9c 3g9y 3gao 3gca 3ger 3ges 3gib 3glp 3gm7 3gog 3got 3gpq 3gs1 3gs5 3gs8 3gtg 3gtj 3gtl 3gtm 3gto 3gtp 3gtq 3gvn 3gx2 3gx3 3gx5 3gx6 3gx7 3h3v 3h5x 3h5y 3hax 3hay 3hga 3hhn 3hhz 3hjf 3hjw 3hjy 3hk2 3hl2 3hm9 3ho1 3hov 3how 3hox 3hoy 3hoz 3hsb 3htx 3hvr 3hxm 3i4m 3i4n 3i5x 3i5y 3i61 3i62 3iab 3ibk 3ice 3icq 3id5 3ie1 3iev 3igi 3iqn 3iqp 3iqr 3irw 3ivk 3ivn 3iwn 3iyq 3iyr 3iz4 3izd 3izy 3j06 3j0d 3j0e 3j0l 3j0p 3j0q 3j16 3j28 3j29 3j2a 3j2b 3j2c 3j2d 3j2e 3j2g 3j2h 3j3v 3j3w 3j45 3j46 3j5s 3j5y 3j6b 3j6v 3j6x 3j6y 3j77 3j78 3j79 3j7a 3j7o 3j7p 3j7q 3j7r 3j7y 3j80 3j81 3j8g 3j92 3j9b 3j9m 3j9w 3j9y 3j9z 3ja1 3jag 3jah 3jai 3jaj 3jam 3jan 3jap 3jaq 3jb7 3jb9 3jbn 3jbo 3jbp 3jbu 3jbv 3jcd 3jce 3jcj 3jcm 3jcn 3jcs 3jct 3jd5 3jq4 3jxq 3jxr 3k0j 3k1v 3k49 3k4e 3k5q 3k5y 3k5z 3k61 3k62 3k64 3kfu 3klv 3kmq 3kms 3kna 3knc 3koa 3ks8 3ktv 3ktw 3l0u 3l25 3l26 3l3c 3la5 3loa 3lob 3lqx 3lrn 3lrr 3lwo 3lwp 3lwq 3lwr 3lwv 3m3y 3m4o 3m7n 3m85 3mdg 3mdi 3mei 3mij 3mj0 3mj3 3mja 3mjb 3moj 3mqk 3mum 3mur 3mut 3muv 3mxh 3ncu 3nd3 3nj6 3nj7 3nl0 3nma 3nmr 3nmu 3nna 3nnc 3nnh 3npn 3npq 3nvi 3nvk 3o3i 3o6e 3o7v 3o8c 3o8r 3og8 3oij 3oin 3ok2 3ok4 3ol6 3ol7 3ol8 3ol9 3olb 3oto 3ouy 3ov7 3ova 3ovb 3ovs 3owi 3oww 3owz 3ox0 3oxb 3oxd 3oxe 3oxj 3oxm 3p22 3p49 3p59 3p6y 3pdm 3pdr 3pew 3pey 3pf4 3pf5 3php 3pio 3pip 3pkm 3pla 3po2 3po3 3ptx 3pu0 3pu1 3pu4 3q0l 3q0m 3q0n 3q0o 3q0p 3q0q 3q0r 3q0s 3q1q 3q1r 3q2t 3q3z 3q50 3q51 3qg9 3qgb 3qgc 3qjj 3qjl 3qjp 3qrp 3qrr 3qsu 3qsy 3r1c 3r1d 3r1e 3r1h 3r1l 3r2c 3r2d 3r4f 3r9w 3r9x 3rc8 3rer 3rg5 3rkf 3rtj 3rw6 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 3s49 3s4g 3s4p 3s7c 3s8u 3sd3 3siu 3siv 3sj2 3ski 3skl 3skr 3skt 3skw 3skz 3slm 3slq 3sn2 3snp 3sqw 3sqx 3ssf 3suh 3sux 3suy 3syw 3szx 3t1h 3t1y 3t3o 3t4b 3t5n 3t5q 3td0 3td1 3tmi 3tra 3trz 3ts0 3ts2 3tup 3twh 3tzr 3u2e 3u4m 3u56 3ucu 3ucz 3ud3 3ud4 3uld 3umy 3uzs 3uzt 3v11 3v6y 3v71 3v74 3v7e 3vjr 3vnu 3vnv 3vrs 3vyx 3vyy 3w1k 3w3s 3wbm 3wc1 3wc2 3wfq 3wfr 3wfs 3wqy 3wqz 3wru 3wzi 3x1l 3zc0 3zd5 3zd6 3zd7 3zgz 3zjt 3zju 3zjv 3zla 3zn8 3zp8 402d 404d 405d 406d 409d 413d 420d 421d 422d 429d 430d 433d 434d 435d 437d 438d 439d 462d 464d 466d 472d 479d 480d 483d 484d 486d 488d 4a2i 4a2x 4a36 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3j 4a3k 4a3l 4a3m 4a4r 4a4s 4a93 4afy 4al5 4al6 4al7 4alp 4am3 4ang 4aob 4aq7 4aqy 4arc 4ari 4as1 4ato 4ay2 4b3g 4b3m 4b3o 4b3p 4b3q 4b3r 4b3s 4b3t 4b5r 4b8t 4ba2 4bbs 4bhh 4bkk 4boc 4bpb 4bs2 4bw0 4bwm 4bxx 4by1 4by7 4by9 4c40 4c4q 4c4w 4c7o 4c8y 4c8z 4c9d 4ce4 4cio 4cqn 4cs1 4csf 4csu 4cxg 4cxh 4d25 4d26 4d5l 4d5n 4d5y 4d61 4d67 4db2 4dr1 4dr2 4dr3 4dr4 4dr5 4dr6 4dr7 4ds6 4duy 4duz 4dv0 4dv1 4dv2 4dv3 4dv4 4dv5 4dv6 4dv7 4dwa 4dzs 4e48 4e58 4e59 4e5c 4e6b 4e78 4e8k 4e8m 4e8n 4e8p 4e8q 4e8r 4e8t 4e8v 4ed5 4ejt 4en5 4ena 4enb 4enc 4erd 4erj 4erl 4eya 4f02 4f1n 4f3t 4f8u 4f8v 4faq 4far 4fau 4faw 4fax 4fb0 4fe5 4fej 4fel 4fen 4feo 4fep 4fnj 4frg 4frn 4fsj 4ftb 4fte 4fts 4fvu 4fwt 4fxd 4g0a 4g6p 4g6r 4g6s 4g7o 4g9z 4gcw 4gg4 4gha 4ghl 4gkj 4gkk 4gl2 4gma 4gpw 4gpx 4gpy 4gv3 4gv6 4gv9 4gxy 4gzy 4gzz 4h5o 4h5p 4h8k 4hkq 4hor 4hos 4hot 4ht8 4ht9 4i67 4ifd 4ig8 4ii9 4ijs 4ill 4ilm 4io9 4ioa 4ioc 4iqs 4iqx 4j1g 4j39 4j50 4j5v 4j7l 4j7m 4jab 4jah 4jf2 4jgn 4ji0 4ji1 4ji2 4ji3 4ji4 4ji6 4ji7 4ji8 4jiy 4jk0 4jng 4jnx 4jrc 4jrd 4jrt 4jv5 4jvh 4jvy 4jxx 4jxz 4jya 4jyz 4k0k 4k27 4k31 4k32 4k4s 4k4t 4k4u 4k4w 4k4x 4k4z 4k50 4khp 4kji 4knq 4kq0 4kqy 4kr2 4kr3 4kr6 4kr7 4kr9 4kre 4krf 4ktg 4kvb 4kxt 4kyy 4kz2 4kzd 4kze 4kzx 4kzy 4kzz 4l47 4l71 4l81 4l8h 4l8r 4lck 4lel 4lf4 4lf5 4lf6 4lf7 4lf8 4lf9 4lfa 4lfb 4lfc 4lfz 4lg2 4lgt 4lj0 4lmz 4lnt 4lq3 4lsk 4lt8 4lvv 4lvw 4lvx 4lvy 4lvz 4lw0 4lx5 4lx6 4m2z 4m30 4m4o 4m59 4m6d 4m7a 4m7d 4mce 4mcf 4mdx 4meg 4meh 4mgm 4mgn 4ms9 4msb 4msr 4n0t 4n2q 4n2s 4n48 4nfo 4nfp 4nfq 4ngb 4ngc 4ngd 4ngf 4ngg 4nh3 4nh5 4nh6 4nha 4nia 4nku 4nl3 4nlf 4nmg 4nxh 4nxm 4nxn 4nya 4nyb 4nyc 4nyd 4nyg 4o26 4o41 4o8j 4oe1 4ohy 4ohz 4oi0 4oi1 4oji 4ol8 4ola 4olb 4oo1 4oo8 4oog 4oq8 4oq9 4oqu 4ox9 4p20 4p3e 4p3s 4p3t 4p3u 4p43 4p5j 4p6f 4p8z 4p95 4p97 4p9r 4pcj 4pco 4pdb 4pdq 4peh 4pei 4phy 4pjo 4pkd 4plx 4pmi 4pmw 4pqu 4pqv 4pr6 4prf 4puo 4pwd 4py5 4q0b 4q5s 4q5v 4q9q 4q9r 4qei 4qg3 4qi2 4qik 4qil 4qjd 4qjh 4qk8 4qk9 4qka 4qlm 4qln 4qm6 4qoz 4qpx 4qqb 4qu6 4qu7 4qvc 4qvd 4qvi 4qyz 4r0d 4r3i 4r4p 4r4v 4rbq 4rby 4rbz 4rc0 4rcj 4rdx 4rge 4rgf 4rj1 4rkv 4rmo 4rne 4rqe 4rqf 4rum 4rwn 4rwo 4rwp 4rzd 4s20 4s2x 4s2y 4s3n 4tna 4tra 4ts0 4ts2 4tua 4tub 4tuc 4tud 4tue 4tuw 4tux 4tv0 4tvx 4tyw 4tyy 4tz0 4tz6 4tzp 4tzv 4tzw 4tzx 4tzy 4tzz 4u1u 4u20 4u24 4u25 4u26 4u34 4u35 4u37 4u38 4u3l 4u3m 4u3n 4u3o 4u3p 4u3r 4u3u 4u47 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u67 4u6f 4u6k 4u6l 4u6m 4u78 4u7u 4u8t 4udv 4ue4 4ue5 4uer 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6m0x 6m62 6m6c 6m6r 6m6s 6m7k 6mcb 6mcc 6mce 6mcf 6mci 6mj0 6mkn 6mpf 6mpi 6mpu 6msf 6mtb 6mtc 6mtd 6mte 6mur 6mus 6mut 6muu 6mxq 6n2v 6n4o 6n5k 6n5l 6n5n 6n5o 6n5p 6n5q 6n5r 6n5s 6n5t 6n7p 6n7r 6n7x 6n8f 6n8h 6n8i 6n8j 6n8k 6n8l 6n8m 6n8n 6n8o 6n9e 6n9f 6n9u 6n9v 6n9w 6n9x 6nd5 6nd6 6ndk 6ne0 6neq 6nf8 6noa 6noc 6nod 6nof 6noh 6nud 6nue 6nut 6ny1 6ny2 6ny3 6ny5 6ny6 6o0x 6o0y 6o0z 6o16 6o1k 6o1l 6o1m 6o1o 6o7k 6o97 6o9j 6o9k 6of1 6ofx 6og7 6ogf 6ogg 6ogi 6ogz 6oj6 6okk 6ol3 6om6 6ord 6otr 6owl 6oxa 6oxi 6oy5 6p2h 6p4g 6p4h 6p5i 6p5j 6p5k 6p5n 6p7m 6p7n 6p7p 6p7q 6pb4 6pif 6pig 6pij 6pj6 6pk9 6pmi 6pmj 6pmo 6pom 6ppf 6ppk 6prv 6pun 6pvk 6pzq 6q1h 6q57 6q8u 6q8v 6q8y 6q95 6q97 6q98 6q9a 6qcs 6qct 6qcv 6qcw 6qcx 6qdv 6qdw 6qic 6qiq 6qir 6qis 6qit 6qiv 6qkl 6qul 6qw6 6qwl 6qx3 6qx8 6qx9 6qxe 6qzp 6r47 6r5k 6r7b 6r7g 6r84 6r9j 6r9m 6r9o 6r9p 6r9q 6r9r 6ra4 6rbd 6rbe 6rcl 6rfl 6rh3 6ri5 6ri7 6ri9 6rid 6rie 6rin 6rip 6rj9 6rja 6rjd 6rjg 6rr7 6rt4 6rt5 6rt6 6rt7 6rw4 6rw5 6rzz 6s05 6s0k 6s0x 6s0z 6s12 6s6b 6s8b 6s8e 6s91 6sae 6sag 6sce 6scf 6sdw 6sdy 6sgb 6sgc 6sh8 6shb 6sic 6sj6 6sjd 6skf 6skg 6snj 6snt 6so9 6spb 6spc 6spd 6spe 6spf 6spg 6sqn 6svs 6sw9 6swa 6swc 6swd 6swe 6sx0 6sx2 6sxo 6sy4 6sy6 6szs 6szu 6szv 6t0n 6t0r 6t0s 6t0u 6t0v 6t0w 6t2c 6t34 6t3k 6t3n 6t3r 6t3s 6t4q 6t59 6t7i 6t7t 6tb3 6tb7 6ted 6tf0 6tf1 6tf2 6tf3 6tfe 6tff 6tfg 6tfh 6th6 6tmf 6tna 6tnn 6tph 6tpq 6tqa 6tqb 6tqn 6tqo 6tw1 6ty9 6tye 6tyf 6tyg 6tz1 6tz2 6u48 6u6j 6u6y 6u79 6u8d 6u8k 6u9x 6ubu 6uc7 6uc8 6uc9 6ucq 6uej 6ues 6uet 6uey 6uf1 6ufg 6ufh 6ufj 6ufk 6ufm 6ugg 6ugi 6ugj 6uo1 6up0 6upx 6upy 6upz 6uq0 6uq1 6uq2 6uq3 6uro 6uv1 6uv2 6uv3 6uv4 6uz7 6v4x 6v5b 6v5c 6v9b 6v9d 6va1 6va2 6va3 6va4 6vbw 6vff 6vlz 6vmi 6vmy 6vpc 6vqv 6vqw 6vqx 6vrb 6vrc 6vrd 6vuh 6vui 6vwl 6vwm 6vwn 6vwt 6vwv 6vzc 6w11 6w1x 6w3m 6w5c 6w62 6w64 6w6k 6w6p 6w6v 6w77 6w7m 6w7n 6w7w 6wd0 6wd1 6wd2 6wd3 6wd4 6wd5 6wd6 6wd7 6wd8 6wd9 6wda 6wdb 6wdc 6wdd 6wde 6wdf 6wdg 6wdh 6wdi 6wdj 6wdk 6wdl 6wdm 6wdr 6whi 6wjr 6wjs 6wlh 6wlj 6wlk 6wll 6wlm 6wlo 6wlq 6wlr 6wls 6wlt 6wlu 6wmp 6wnt 6wnv 6wnw 6woo 6wox 6woy 6wpi 6wqn 6wqq 6wre 6wrs 6wru 6wtl 6wtr 6wu9 6wua 6wub 6wvj 6wxx 6wxy 6wy2 6wy3 6wyb 6wzr 6wzs 6x1b 6x26 6x2f 6x2n 6x43 6x4w 6x4y 6x50 6x5m 6x5n 6xa1 6xas 6xav 6xb7 6xbu 6xe0 6xez 6xh0 6xh1 6xh2 6xh3 6xh8 6xhv 6xhw 6xhx 6xhy 6xir 6xjw 6xki 6xkn 6xko 6xl1 6xl9 6xlj 6xll 6xlm 6xln 6xlv 6xlw 6xlx 6xmf 6xmg 6xqb 6xqe 6xrq 6xrz 6xu6 6xu7 6xu8 6xur 6xus 6xwj 6xww 6xxa 6xxb 6xyw 6xz7 6xza 6xzb 6xzq 6y0g 6y0t 6y0y 6y2l 6y4b 6y50 6y57 6y69 6y6x 6y7c 6yal 6yam 6yan 6ybs 6ybv 6ybw 6ydp 6ydw 6yef 6yft 6yhs 6yl5 6ylb 6ylg 6ylh 6ylx 6yly 6ymi 6ymj 6ymk 6yml 6ymm 6ymw 6ypu 6ys3 6ys5 6ysi 6ysr 6yss 6yst 6ysu 6yt9 6ytf 6yud 6yw5 6ywo 6yxx 6yxy 6yym 6yyt 6z18 6z6g 6z6j 6z6k 6z6l 6z6m 6z6n 6z8k 6z9p 6z9q 6z9r 6z9s 6z9t 6zce 6zdp 6zdq 6zdu 6zj3 6zlc 6zlw 6zm2 6zm7 6zme 6zmi 6zmo 6zmt 6zmw 6zn5 6zoj 6zok 6zol 6zon 6zot 6zp4 6zqa 6zqb 6zqc 6zqd 6zqe 6zqf 6zqg 6ztj 6ztl 6ztm 6ztn 6zto 6ztp 6zu9 6zuo 6zv6 6zvh 6zvi 6zvk 6zww 6zxd 6zxe 6zxf 6zxg 6zxh 6zym 7YSE 7a01 7a09 7a0r 7a0s 7a1g 7a3y 7a5f 7a5g 7a5h 7a5i 7a5j 7a5k 7a5p 7a9w 7a9x 7aap 7aav 7abf 7abg 7abh 7abi 7acs 7act 7adb 7adc 7add 7ade 7ae1 7ae3 7aea 7ajt 7aju 7aoe 7aoi 7aqc 7aqd 7as8 7as9 7asa 7ase 7b0y 7b3b 7b3c 7b3d 7b9v 7bah 7bai 7bg6 7bg9 7bgb 7bhp 7bl3 7bl4 7bt6 7btb 7bv8 7bzf 7c06 7c07 7c08 7c2k 7c45 7c79 7c7a 7c7l 7chd 7cpu 7cpv 7ctt 7cxm 7cxn 7cyq 7d0f 7d0g 7d12 7d1a 7d58 7d7v 7d8o 7dco 7dd3 7dd4 7dic 7did 7dmq 7dn3 7dol 7du2 7dug 7duh 7dui 7dvq 7e9e 7e9i 7eaf 7eag 7egq 7eh0 7eh1 7eh2 7el1 7el9 7elp 7elq 7elr 7els 7eog 7eoh 7eoi 7eoj 7eok 7eol 7eom 7eon 7eoo 7eop 7eqj 7ez0 7ez2 7fhi 7fj0 7jil 7jju 7jl0 7jl1 7jl2 7jl3 7jqb 7jqc 7jqq 7jrr 7jrs 7jrt 7jss 7jsw 7jsz 7jt1 7jt2 7jt3 7ju1 7jyy 7jz0 7jzw 7jzx 7jzz 7k00 7k16 7k1z 7k4l 7k5i 7k9d 7k9e 7kga 7kha 7kjv 7kjw 7kjx 7kkv 7kl3 7krp 7kuk 7kum 7kun 7kuo 7kup 7kvt 7kvu 7kvv 7kwg 7l0z 7l1f 7l3r 7lm1 7lma 7lmb 7lne 7lnf 7lng 7lo9 7lva 7lyf 7lyg 7lyj 7md7 7mky 7mlw 7msf 7ndj 7nfx 7nhk 7nhl 7nhm 7nhn 7njc 7nky 7nqh 7nql 7nrc 7nrd 7nso 7nt5 7nt6 7o0g 7oa3 7oav 7oaw 7oax 7obq 7obr 7odf 7odr 7ods 7odt 7oe0 7oe1 7of0 7of2 7of3 7of4 7of5 7of6 7of7 7og4 7og6 7ogk 7ogm 7oi0 7oi3 7okx 7oky 7ol0 7om6 7om7 7oma 7onb 7ope 7q33 7qsh 7qtn 7qua 7r1f 7rex 7sam 7td7 7tda 7tdb 7tdc 7u4a 7uxa 7wnu 7xpg 7xwz 7zpj 7zpl 8DH0 8DH1 8DH2 8DH3 8a40 8a98 8att 8atv 8atw 8b7y 8b9i 8b9k 8bd5 8bd6 8bdr 8be0 8bek 8bf5 8bip 8bvj 8bvm 8bwt 8c5s 8c5u 8dh4 8dh5 8drh 8ehq 8eiu 8ej3 8eoe 8eof 8eos 8eot 8evp 8evt 8ewc 8ewg 8exy 8ffi 8ffy 8fza 8hra 8hrb 8iss 8isz 8it0 8joz 8k9g 8oeu 8oev 8oew 8of0 8ppk 8ppl 8psh 8pxs 8q63 or define PDB id and coma separated residue numbers
Motifs type: Loops Stems Single stranded
Scan mode: Detailed Fast
Search mode: motifs in query query in motifs Match RNA motifs within the input structure (motifs in query) or match input structure within the RNA motifs (query in motifs)
Selected PDB: Ignore 124d 157d 165d 176d 17ra 1a1t 1a34 1a3m 1a4d 1a4t 1a51 1a60 1a9l 1a9n 1ac3 1afx 1ajf 1ajl 1ajt 1aju 1akx 1al5 1am0 1anr 1aq3 1aq4 1aqo 1arj 1asy 1asz 1ato 1atv 1atw 1aud 1av6 1b23 1b2m 1b36 1b7f 1bau 1biv 1bj2 1bmv 1bn0 1bvj 1byj 1bz2 1bz3 1bzt 1bzu 1c04 1c0a 1c0o 1c2q 1c2w 1c2x 1c4l 1c9s 1cq5 1cql 1csl 1cvj 1cwp 1cx5 1d0t 1d0u 1d4r 1ddl 1ddy 1dfu 1di2 1dk1 1dqf 1dqh 1drr 1duh 1dul 1duq 1dz5 1e4p 1e7k 1e8o 1e95 1ebq 1ebr 1ebs 1ec6 1efo 1efs 1efw 1egk 1eht 1ehz 1ei2 1eiy 1ejz 1eka 1ekd 1ekz 1elh 1esh 1esy 1et4 1etf 1etg 1euq 1euy 1evv 1exd 1exy 1f1t 1f27 1f5g 1f5h 1f5u 1f6u 1f6x 1f6z 1f78 1f79 1f7f 1f7g 1f7h 1f7i 1f7u 1f7v 1f7y 1f84 1f85 1f8v 1f9l 1fcw 1feq 1feu 1ffk 1ffy 1fg0 1fhk 1fir 1fix 1fje 1fjg 1fka 1fl8 1fmn 1fnx 1foq 1fuf 1fxl 1fyo 1fyp 1g1x 1g2e 1g2j 1g4q 1g59 1g70 1gax 1gid 1grz 1gtf 1gtn 1gtr 1gts 1guc 1h0q 1h1k 1h2c 1h2d 1h38 1h3e 1h4q 1h4s 1hc8 1hg9 1hji 1hlx 1hmh 1hnw 1hnx 1hnz 1hq1 1hr0 1hr2 1hs1 1hs3 1hs4 1hs8 1hvu 1hwq 1hys 1i3x 1i3y 1i46 1i4b 1i4c 1i5l 1i6h 1i6u 1i94 1i95 1i96 1i97 1i9f 1i9v 1i9x 1ibk 1ibl 1ibm 1ie1 1ie2 1ik5 1ikd 1il2 1ivs 1j1u 1j2b 1j4y 1j5a 1j5e 1j6s 1j7t 1j8g 1j9h 1jb8 1jbr 1jbs 1jbt 1jgo 1jgp 1jgq 1jid 1jzv 1jzx 1jzy 1jzz 1k01 1k4a 1k4b 1k6g 1k6h 1k8s 1k8w 1k9w 1kaj 1kd3 1kd4 1kd5 1kfo 1kh6 1kis 1kka 1kks 1knz 1koc 1kod 1kog 1kos 1kp7 1kpd 1kpy 1kpz 1kq2 1kuq 1kxk 1l1c 1l1w 1l2x 1l3d 1l3z 1l8v 1l9a 1laj 1lc4 1lc6 1ldz 1lmv 1lng 1lnt 1lu3 1luu 1lux 1lvj 1m5k 1m5l 1m5o 1m5p 1m5v 1m82 1m8v 1m8w 1m8x 1m8y 1mdg 1me1 1mfj 1mfk 1mfq 1mhk 1mis 1mji 1ml5 1mme 1mms 1mnx 1msw 1msy 1mt4 1muv 1mv1 1mv2 1mv6 1mwg 1mwl 1my9 1mzp 1n1h 1n32 1n33 1n34 1n35 1n36 1n38 1n66 1n77 1n78 1n8x 1na2 1nb7 1nbk 1nbr 1nbs 1nc0 1nem 1njm 1njn 1njo 1njp 1nkw 1nlc 1nta 1ntb 1ntq 1nts 1ntt 1nuj 1nuv 1nwx 1nwy 1nxr 1nyb 1nyi 1nz1 1o0b 1o0c 1o15 1o3z 1o9m 1ob2 1ob5 1okf 1oln 1ond 1oo7 1ooa 1oq0 1osu 1osw 1ow9 1p5m 1p5n 1p5o 1p5p 1p6v 1p79 1p9x 1pbm 1pbr 1pgl 1pjg 1pjo 1pjy 1pvo 1q29 1q2r 1q2s 1q8n 1q93 1q96 1q9a 1qa6 1qbp 1qc0 1qc8 1qd3 1qes 1qet 1qf6 1qfq 1qln 1qrs 1qrt 1qru 1qtq 1qu2 1qu3 1qwa 1qwb 1qzw 1r2p 1r3e 1r3x 1r4h 1r7w 1r7z 1r9f 1r9s 1r9t 1rau 1raw 1rc7 1rfr 1rgo 1rht 1rkj 1rlg 1rmn 1rmv 1rna 1rng 1rnk 1roq 1rpu 1rrd 1rrr 1rxa 1rxb 1ry1 1s03 1s0v 1s2f 1s34 1s72 1s76 1s77 1s9s 1sa9 1saq 1scl 1sdr 1sds 1ser 1sfo 1si3 1sj3 1sj4 1sjf 1slo 1slp 1sm1 1sy4 1syz 1sz1 1t0d 1t0e 1t0k 1t28 1t2r 1t4l 1tbk 1tfn 1tfw 1tfy 1tjz 1tlr 1tn1 1tn2 1tob 1tra 1ttt 1tut 1txs 1u0b 1u1y 1u2a 1u3k 1u63 1u6b 1u6p 1u9s 1ull 1un6 1urn 1utd 1uts 1uud 1uuu 1uvi 1uvj 1uvk 1uvl 1uvm 1uvn 1vbx 1vby 1vbz 1vc0 1vc5 1vc6 1vfg 1vop 1vtq 1vvj 1vy4 1vy5 1vy7 1wks 1wmq 1wne 1wpu 1wrq 1wsu 1wtt 1wvd 1wwd 1wwe 1wwg 1wz2 1x8w 1x9c 1x9k 1xbp 1xhp 1xjr 1xmo 1xmq 1xnq 1xnr 1xok 1xp7 1xpe 1xpf 1xpo 1xpr 1xpu 1xsg 1xsh 1xst 1xv0 1xwp 1xwu 1y0q 1y1w 1y26 1y27 1y39 1y3o 1y3s 1y69 1y6s 1y6t 1y73 1y77 1y90 1y95 1y99 1yfg 1yfv 1yg3 1yg4 1ykq 1ykv 1ylg 1yls 1ymo 1yn1 1yn2 1ync 1yne 1yrj 1ysv 1ytu 1yty 1yvp 1yxp 1yy0 1yyk 1yyo 1yyw 1yz9 1yzd 1z2j 1z30 1z31 1z43 1z58 1z79 1z7f 1zbh 1zbi 1zbl 1zc5 1zci 1zdh 1zdi 1zdj 1zdk 1ze2 1zev 1zft 1zfv 1zfx 1zh5 1zho 1zif 1zig 1zih 1zjw 1zl3 1zo1 1zse 1zx7 1zz5 1zzn 205d 219d 255d 259d 280d 283d 28sp 28sr 299d 2a04 2a0p 2a1r 2a2e 2a43 2a64 2a8v 2a9l 2a9x 2aar 2ab4 2ad9 2adb 2adc 2adt 2aht 2ake 2ann 2anr 2ao5 2ap0 2ap5 2asb 2atw 2au4 2awe 2awq 2az0 2az2 2azx 2b2d 2b2e 2b2g 2b3j 2b57 2b63 2b6g 2b7g 2b8r 2b8s 2bbv 2bcy 2bcz 2be0 2bee 2bgg 2bh2 2bj2 2bj6 2bny 2bq5 2bs0 2bs1 2bte 2bu1 2bx2 2byt 2c06 2c0b 2c4q 2c4r 2c4y 2c4z 2c50 2c51 2cd1 2cd3 2cd5 2cd6 2cky 2csx 2ct8 2cv0 2cv1 2cv2 2czj 2d17 2d18 2d19 2d1a 2d1b 2d2k 2d2l 2d3o 2d6f 2db3 2dd1 2dd2 2dd3 2der 2det 2deu 2dlc 2dqo 2dqp 2dqq 2dr2 2dr5 2dr7 2dr8 2dr9 2dra 2drb 2du3 2du4 2du5 2du6 2dvi 2dxi 2e2h 2e2i 2e2j 2e5l 2e9r 2e9t 2e9z 2ec0 2ees 2eet 2eeu 2eev 2eew 2err 2es5 2ese 2esi 2esj 2et3 2et4 2et5 2et8 2euy 2evy 2ez6 2f4s 2f4t 2f4u 2f4v 2f87 2f88 2f8k 2f8s 2f8t 2fcx 2fcy 2fcz 2fd0 2fdt 2fey 2fgp 2fk6 2fmt 2fqn 2fy1 2fz2 2g1g 2g1w 2g3s 2g4b 2g5k 2g8f 2g8h 2g8i 2g8k 2g8u 2g8v 2g8w 2g91 2g92 2g9c 2gbh 2gcs 2gcv 2gdi 2gic 2gio 2gip 2gis 2gje 2gjw 2gm0 2go5 2grb 2grw 2gtt 2gun 2gv3 2gv4 2gvo 2gxb 2h0w 2h0x 2h1m 2h49 2hem 2hgh 2hhh 2hns 2ho6 2ho7 2hoj 2hok 2hol 2hom 2hoo 2hop 2ht1 2hua 2hvy 2hw8 2hyi 2i2y 2i7e 2i7z 2i82 2i91 2il9 2irn 2iro 2ix1 2ixy 2ixz 2iy5 2iz8 2iz9 2izm 2izn 2j0q 2j0s 2j28 2j37 2ja5 2ja6 2ja7 2ja8 2jea 2jlt 2jlu 2jlv 2jlw 2jlx 2jly 2jlz 2jpp 2jq7 2jr4 2jrg 2jrq 2jse 2jsg 2jtp 2juk 2jwv 2jxq 2jxs 2jxv 2jyf 2jyh 2jyj 2k3z 2k41 2k4c 2k5z 2k65 2k66 2k7e 2k95 2k96 2kbp 2kd8 2kdq 2ke6 2kez 2kfy 2kg0 2kg1 2kgp 2kh9 2khy 2km8 2kmj 2koc 2kp3 2kp4 2kpc 2kpd 2kpv 2krl 2krp 2krq 2krv 2krw 2kry 2krz 2ktz 2ku0 2kur 2kuu 2kuv 2kvn 2kx5 2kx8 2kxm 2kxn 2kxz 2ky0 2ky1 2ky2 2kye 2kzl 2l1f 2l1v 2l2j 2l2k 2l3c 2l3e 2l3j 2l41 2l5d 2l5z 2l6i 2l8c 2l8f 2l8h 2l8u 2l8w 2l94 2l9e 2la5 2lac 2lar 2lb4 2lbj 2lbk 2lbl 2lbq 2lbr 2lbs 2lc8 2ldl 2ldt 2ldz 2leb 2lec 2lhp 2li4 2li8 2ljj 2lk3 2lkr 2lp9 2lpa 2lps 2lpt 2lqz 2lu0 2lub 2lun 2lup 2lv0 2lvy 2lwk 2lx1 2m12 2m18 2m1o 2m21 2m22 2m23 2m24 2m4q 2m4w 2m57 2m58 2m5u 2m8d 2m8k 2mb0 2meq 2mer 2mf0 2mf1 2mfd 2mfe 2mff 2mfg 2mfh 2mgz 2mhi 2mi0 2mis 2miy 2mjh 2mki 2mkk 2mkn 2mn0 2mnc 2mqo 2mqp 2mqq 2mqt 2mqv 2ms0 2ms1 2ms5 2mtj 2mtk 2mtv 2mvs 2mvy 2mxj 2mxk 2mxl 2mxs 2mxy 2mz1 2n0j 2n0r 2n1q 2n2o 2n2p 2n3o 2n3q 2n3r 2n4l 2n6q 2n6s 2n6t 2n6w 2n6x 2n7c 2n7m 2n7x 2n82 2n8l 2n8m 2n8v 2nbx 2nby 2nbz 2nc0 2nc1 2nci 2ncq 2ncr 2nok 2noq 2npy 2npz 2nqp 2nr0 2nre 2nue 2nuf 2nug 2nvq 2nvt 2nvx 2nvz 2nz4 2o32 2o3v 2o3w 2o3x 2o3y 2o43 2o44 2o45 2o81 2o83 2oe5 2oe6 2oe8 2oeu 2ogm 2ogn 2ogo 2oih 2oij 2oiu 2oiy 2oj0 2oj3 2oj8 2om3 2om7 2oom 2oue 2ozb 2p7f 2p89 2pcv 2pcw 2pjp 2ply 2pn3 2pn4 2pn9 2po1 2pwt 2pxb 2pxd 2pxe 2pxf 2pxk 2pxl 2pxp 2pxq 2pxt 2pxu 2pxv 2py9 2q1o 2q1r 2q66 2qa4 2qbz 2qek 2qh2 2qh3 2qk9 2qkb 2qkk 2qqp 2qus 2quw 2qux 2qwy 2r1s 2r20 2r21 2r22 2r7r 2r7s 2r7t 2r7u 2r7v 2r7w 2r7x 2r7y 2r7z 2r8s 2r92 2r93 2rd2 2re8 2rfk 2rkj 2rlu 2rn1 2ro2 2rp0 2rp1 2rpk 2rpt 2rqc 2rqj 2rra 2rrc 2rs2 2rsk 2ru3 2ru7 2rvo 2tmv 2tob 2tpk 2tra 2uwm 2uxb 2uxd 2v0g 2v3c 2v6w 2v7r 2val 2vnu 2vod 2von 2voo 2vop 2vpl 2vrt 2vum 2vuq 2w2h 2w89 2wj8 2ww9 2wwa 2wwb 2wyy 2x1f 2x7n 2xb2 2xbm 2xc7 2xd0 2xdb 2xdd 2xea 2xeb 2xfm 2xgj 2xli 2xlj 2xlk 2xnr 2xnw 2xnz 2xo1 2xpj 2xs2 2xs5 2xs7 2xsl 2xxa 2xzl 2y8w 2y8y 2y95 2y9h 2ydh 2ygh 2yh1 2yhm 2yie 2yif 2yjy 2ykg 2ykr 2yu9 2zh1 2zh2 2zh3 2zh4 2zh5 2zh6 2zh7 2zh8 2zh9 2zha 2zhb 2zi0 2zjp 2zjq 2zjr 2zko 2zm5 2zm6 2zni 2zue 2zuf 2zxu 2zy6 2zzm 2zzn 300d 301d 333d 353d 354d 357d 359d 361d 364d 377d 379d 387d 397d 3a2k 3a3a 3a6p 3adb 3adc 3add 3adi 3adl 3aev 3agv 3ahu 3akz 3al0 3am1 3amt 3amu 3aoh 3aoi 3avt 3avu 3avv 3avw 3avx 3avy 3b0u 3b0v 3b31 3b4a 3b4b 3b4c 3b58 3b5a 3b5f 3b5s 3b91 3bbi 3bbk 3bbm 3bbv 3bbx 3bnl 3bnn 3bno 3bnp 3bnq 3bnr 3bns 3bnt 3bo0 3bo1 3bo2 3bo3 3boy 3bsb 3bsn 3bso 3bsu 3bsx 3bt7 3bwp 3bx2 3bx3 3c44 3cf5 3cgp 3cgq 3cgr 3cgs 3ciy 3cjz 3cul 3cun 3cw5 3cw6 3cz3 3czw 3d0m 3d0u 3d0x 3d2g 3d2s 3d2v 3d2x 3deg 3dh3 3dhs 3dig 3dil 3dim 3dio 3diq 3dir 3dis 3dix 3diy 3diz 3dj0 3dj2 3dkn 3dll 3ds7 3dvv 3dvz 3dw4 3dw5 3dw6 3dw7 3e2e 3e3j 3e5c 3e5e 3e5f 3egz 3eog 3eoh 3eph 3epj 3epk 3epl 3eqt 3er9 3ex7 3f2q 3f2t 3f2w 3f2x 3f2y 3f30 3f4e 3f4g 3f4h 3f73 3far 3fht 3fo4 3fo6 3foz 3fs0 3fte 3ftf 3ftm 3fu2 3fwo 3g0h 3g4m 3g78 3g8s 3g8t 3g96 3g9c 3g9y 3gao 3gca 3ger 3ges 3gib 3glp 3gm7 3gog 3got 3gpq 3gs1 3gs5 3gs8 3gtg 3gtj 3gtl 3gtm 3gto 3gtp 3gtq 3gvn 3gx2 3gx3 3gx5 3gx6 3gx7 3h3v 3h5x 3h5y 3hax 3hay 3hga 3hhn 3hhz 3hjf 3hjw 3hjy 3hk2 3hl2 3hm9 3ho1 3hov 3how 3hox 3hoy 3hoz 3hsb 3htx 3hvr 3hxm 3i4m 3i4n 3i5x 3i5y 3i61 3i62 3iab 3ibk 3ice 3icq 3id5 3ie1 3iev 3igi 3iqn 3iqp 3iqr 3irw 3ivk 3ivn 3iwn 3iyq 3iyr 3iz4 3izd 3izy 3j06 3j0d 3j0e 3j0l 3j0p 3j0q 3j16 3j28 3j29 3j2a 3j2b 3j2c 3j2d 3j2e 3j2g 3j2h 3j3v 3j3w 3j45 3j46 3j5s 3j5y 3j6b 3j6v 3j6x 3j6y 3j77 3j78 3j79 3j7a 3j7o 3j7p 3j7q 3j7r 3j7y 3j80 3j81 3j8g 3j92 3j9b 3j9m 3j9w 3j9y 3j9z 3ja1 3jag 3jah 3jai 3jaj 3jam 3jan 3jap 3jaq 3jb7 3jb9 3jbn 3jbo 3jbp 3jbu 3jbv 3jcd 3jce 3jcj 3jcm 3jcn 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6d12 6d1v 6d2z 6d30 6d3p 6d6v 6d8a 6d8f 6d8l 6d8m 6d8n 6d8o 6d8p 6d90 6d92 6d95 6d9j 6d9k 6d9l 6db8 6db9 6dcc 6dcl 6ddd 6ddg 6dlq 6dlr 6dls 6dlt 6dmc 6dmd 6dme 6dmn 6dmv 6dn1 6dn2 6dn3 6dnc 6dnh 6dnr 6do8 6do9 6doa 6dob 6doc 6dod 6doe 6dof 6dog 6doh 6doi 6doj 6dok 6dol 6dom 6don 6doo 6dop 6doq 6dor 6dos 6dot 6dou 6dov 6dow 6dox 6doy 6doz 6dp0 6dp1 6dp2 6dp3 6dp4 6dp5 6dp6 6dp7 6dp9 6dpa 6dpb 6dpc 6dpd 6dpe 6dpf 6dpg 6dph 6dpi 6dpj 6dpk 6dpl 6dpm 6dpn 6dpo 6dpp 6dt8 6dta 6dtd 6dti 6du4 6du5 6duq 6dv9 6dvb 6dvc 6dzi 6dzk 6dzp 6e0o 6e1s 6e1t 6e1u 6e1v 6e1w 6e4p 6e5o 6e79 6e7a 6e7l 6e8s 6e8t 6e8u 6e9e 6e9f 6een 6ek0 6elz 6em1 6em3 6em4 6em5 6eml 6enf 6enj 6enu 6eri 6evj 6evk 6exn 6exv 6ez0 6f3h 6f41 6f4a 6f4g 6f4h 6f5o 6fai 6fbs 6fec 6ff4 6ff7 6fhh 6fhi 6fkr 6flp 6flq 6fpq 6fpx 6fq3 6fql 6fqr 6frk 6fsz 6ft6 6ftg 6fti 6ftj 6fuw 6fxc 6fz0 6g18 6g19 6g1s 6g1x 6g2k 6g3b 6g4s 6g4w 6g51 6g53 6g5h 6g5i 6g63 6g90 6g99 6gaw 6gaz 6gb2 6gbm 6gbz 6gc0 6gc4 6gc5 6gc6 6gc7 6gc8 6gd2 6gd3 6ge1 6gfw 6gjz 6gkh 6gkm 6gmh 6gml 6gmy 6gov 6gpg 6gq1 6gqb 6gqv 6gsj 6gsk 6gtc 6gtd 6gte 6gtf 6gtg 6gv4 6gvy 6gwt 6gx6 6gxm 6gxn 6gxo 6gxp 6gyv 6gz3 6gz5 6gzk 6gzq 6gzx 6gzz 6h0r 6h25 6h4n 6h58 6h5q 6h61 6h66 6h67 6h68 6h9h 6h9i 6ha1 6ha8 6hag 6hak 6hau 6hbt 6hbx 6hc5 6hcf 6hcj 6hcm 6hcq 6hct 6hd7 6hiv 6hiw 6hiy 6hiz 6hko 6hlq 6hlr 6hma 6hmi 6hrm 6htq 6htu 6hu6 6hxx 6hyk 6hyu 6i0t 6i0u 6i0v 6i0y 6i1k 6i1l 6i1v 6i1w 6i2n 6i3p 6i84 6i9r 6ia2 6icz 6id0 6id1 6ifk 6ifl 6ifn 6ifo 6ifr 6ifu 6ify 6ifz 6ig0 6ij2 6inq 6ip5 6ip6 6ip8 6iqw 6ir9 6is0 6iv6 6izp 6j4w 6j4x 6j4y 6j4z 6j50 6j51 6j6g 6j6h 6j6n 6j6q 6j7z 6jbf 6jbg 6jbq 6jcx 6jcy 6jdq 6jdv 6je3 6je4 6je9 6jfu 6jim 6jji 6joo 6jvx 6jxm 6k32 6k3z 6k4p 6k4q 6k4s 6k4u 6k57 6k84 6kc7 6kc8 6ke6 6kj6 6kl9 6klb 6kle 6klh 6kon 6koo 6kop 6koq 6kqd 6kqe 6kqf 6kqg 6kqh 6kql 6kqm 6kqn 6kr6 6ktc 6kug 6kuj 6kuk 6kup 6kur 6kut 6kuu 6kuv 6kwq 6kwr 6l1w 6l74 6las 6lau 6lax 6laz 6lkq 6llb 6lnb 6lnc 6lqm 6lse 6lsr 6lss 6lt7 6ltp 6ltr 6ltu 6lu0 6lu8 6lvr 6lxd 6m0v 6m0w 6m0x 6m62 6m6c 6m6r 6m6s 6m7k 6mcb 6mcc 6mce 6mcf 6mci 6mj0 6mkn 6mpf 6mpi 6mpu 6msf 6mtb 6mtc 6mtd 6mte 6mur 6mus 6mut 6muu 6mxq 6n2v 6n4o 6n5k 6n5l 6n5n 6n5o 6n5p 6n5q 6n5r 6n5s 6n5t 6n7p 6n7r 6n7x 6n8f 6n8h 6n8i 6n8j 6n8k 6n8l 6n8m 6n8n 6n8o 6n9e 6n9f 6n9u 6n9v 6n9w 6n9x 6nd5 6nd6 6ndk 6ne0 6neq 6nf8 6noa 6noc 6nod 6nof 6noh 6nud 6nue 6nut 6ny1 6ny2 6ny3 6ny5 6ny6 6o0x 6o0y 6o0z 6o16 6o1k 6o1l 6o1m 6o1o 6o7k 6o97 6o9j 6o9k 6of1 6ofx 6og7 6ogf 6ogg 6ogi 6ogz 6oj6 6okk 6ol3 6om6 6ord 6otr 6owl 6oxa 6oxi 6oy5 6p2h 6p4g 6p4h 6p5i 6p5j 6p5k 6p5n 6p7m 6p7n 6p7p 6p7q 6pb4 6pif 6pig 6pij 6pj6 6pk9 6pmi 6pmj 6pmo 6pom 6ppf 6ppk 6prv 6pun 6pvk 6pzq 6q1h 6q57 6q8u 6q8v 6q8y 6q95 6q97 6q98 6q9a 6qcs 6qct 6qcv 6qcw 6qcx 6qdv 6qdw 6qic 6qiq 6qir 6qis 6qit 6qiv 6qkl 6qul 6qw6 6qwl 6qx3 6qx8 6qx9 6qxe 6qzp 6r47 6r5k 6r7b 6r7g 6r84 6r9j 6r9m 6r9o 6r9p 6r9q 6r9r 6ra4 6rbd 6rbe 6rcl 6rfl 6rh3 6ri5 6ri7 6ri9 6rid 6rie 6rin 6rip 6rj9 6rja 6rjd 6rjg 6rr7 6rt4 6rt5 6rt6 6rt7 6rw4 6rw5 6rzz 6s05 6s0k 6s0x 6s0z 6s12 6s6b 6s8b 6s8e 6s91 6sae 6sag 6sce 6scf 6sdw 6sdy 6sgb 6sgc 6sh8 6shb 6sic 6sj6 6sjd 6skf 6skg 6snj 6snt 6so9 6spb 6spc 6spd 6spe 6spf 6spg 6sqn 6svs 6sw9 6swa 6swc 6swd 6swe 6sx0 6sx2 6sxo 6sy4 6sy6 6szs 6szu 6szv 6t0n 6t0r 6t0s 6t0u 6t0v 6t0w 6t2c 6t34 6t3k 6t3n 6t3r 6t3s 6t4q 6t59 6t7i 6t7t 6tb3 6tb7 6ted 6tf0 6tf1 6tf2 6tf3 6tfe 6tff 6tfg 6tfh 6th6 6tmf 6tna 6tnn 6tph 6tpq 6tqa 6tqb 6tqn 6tqo 6tw1 6ty9 6tye 6tyf 6tyg 6tz1 6tz2 6u48 6u6j 6u6y 6u79 6u8d 6u8k 6u9x 6ubu 6uc7 6uc8 6uc9 6ucq 6uej 6ues 6uet 6uey 6uf1 6ufg 6ufh 6ufj 6ufk 6ufm 6ugg 6ugi 6ugj 6uo1 6up0 6upx 6upy 6upz 6uq0 6uq1 6uq2 6uq3 6uro 6uv1 6uv2 6uv3 6uv4 6uz7 6v4x 6v5b 6v5c 6v9b 6v9d 6va1 6va2 6va3 6va4 6vbw 6vff 6vlz 6vmi 6vmy 6vpc 6vqv 6vqw 6vqx 6vrb 6vrc 6vrd 6vuh 6vui 6vwl 6vwm 6vwn 6vwt 6vwv 6vzc 6w11 6w1x 6w3m 6w5c 6w62 6w64 6w6k 6w6p 6w6v 6w77 6w7m 6w7n 6w7w 6wd0 6wd1 6wd2 6wd3 6wd4 6wd5 6wd6 6wd7 6wd8 6wd9 6wda 6wdb 6wdc 6wdd 6wde 6wdf 6wdg 6wdh 6wdi 6wdj 6wdk 6wdl 6wdm 6wdr 6whi 6wjr 6wjs 6wlh 6wlj 6wlk 6wll 6wlm 6wlo 6wlq 6wlr 6wls 6wlt 6wlu 6wmp 6wnt 6wnv 6wnw 6woo 6wox 6woy 6wpi 6wqn 6wqq 6wre 6wrs 6wru 6wtl 6wtr 6wu9 6wua 6wub 6wvj 6wxx 6wxy 6wy2 6wy3 6wyb 6wzr 6wzs 6x1b 6x26 6x2f 6x2n 6x43 6x4w 6x4y 6x50 6x5m 6x5n 6xa1 6xas 6xav 6xb7 6xbu 6xe0 6xez 6xh0 6xh1 6xh2 6xh3 6xh8 6xhv 6xhw 6xhx 6xhy 6xir 6xjw 6xki 6xkn 6xko 6xl1 6xl9 6xlj 6xll 6xlm 6xln 6xlv 6xlw 6xlx 6xmf 6xmg 6xqb 6xqe 6xrq 6xrz 6xu6 6xu7 6xu8 6xur 6xus 6xwj 6xww 6xxa 6xxb 6xyw 6xz7 6xza 6xzb 6xzq 6y0g 6y0t 6y0y 6y2l 6y4b 6y50 6y57 6y69 6y6x 6y7c 6yal 6yam 6yan 6ybs 6ybv 6ybw 6ydp 6ydw 6yef 6yft 6yhs 6yl5 6ylb 6ylg 6ylh 6ylx 6yly 6ymi 6ymj 6ymk 6yml 6ymm 6ymw 6ypu 6ys3 6ys5 6ysi 6ysr 6yss 6yst 6ysu 6yt9 6ytf 6yud 6yw5 6ywo 6yxx 6yxy 6yym 6yyt 6z18 6z6g 6z6j 6z6k 6z6l 6z6m 6z6n 6z8k 6z9p 6z9q 6z9r 6z9s 6z9t 6zce 6zdp 6zdq 6zdu 6zj3 6zlc 6zlw 6zm2 6zm7 6zme 6zmi 6zmo 6zmt 6zmw 6zn5 6zoj 6zok 6zol 6zon 6zot 6zp4 6zqa 6zqb 6zqc 6zqd 6zqe 6zqf 6zqg 6ztj 6ztl 6ztm 6ztn 6zto 6ztp 6zu9 6zuo 6zv6 6zvh 6zvi 6zvk 6zww 6zxd 6zxe 6zxf 6zxg 6zxh 6zym 7YSE 7a01 7a09 7a0r 7a0s 7a1g 7a3y 7a5f 7a5g 7a5h 7a5i 7a5j 7a5k 7a5p 7a9w 7a9x 7aap 7aav 7abf 7abg 7abh 7abi 7acs 7act 7adb 7adc 7add 7ade 7ae1 7ae3 7aea 7ajt 7aju 7aoe 7aoi 7aqc 7aqd 7as8 7as9 7asa 7ase 7b0y 7b3b 7b3c 7b3d 7b9v 7bah 7bai 7bg6 7bg9 7bgb 7bhp 7bl3 7bl4 7bt6 7btb 7bv8 7bzf 7c06 7c07 7c08 7c2k 7c45 7c79 7c7a 7c7l 7chd 7cpu 7cpv 7ctt 7cxm 7cxn 7cyq 7d0f 7d0g 7d12 7d1a 7d58 7d7v 7d8o 7dco 7dd3 7dd4 7dic 7did 7dmq 7dn3 7dol 7du2 7dug 7duh 7dui 7dvq 7e9e 7e9i 7eaf 7eag 7egq 7eh0 7eh1 7eh2 7el1 7el9 7elp 7elq 7elr 7els 7eog 7eoh 7eoi 7eoj 7eok 7eol 7eom 7eon 7eoo 7eop 7eqj 7ez0 7ez2 7fhi 7fj0 7jil 7jju 7jl0 7jl1 7jl2 7jl3 7jqb 7jqc 7jqq 7jrr 7jrs 7jrt 7jss 7jsw 7jsz 7jt1 7jt2 7jt3 7ju1 7jyy 7jz0 7jzw 7jzx 7jzz 7k00 7k16 7k1z 7k4l 7k5i 7k9d 7k9e 7kga 7kha 7kjv 7kjw 7kjx 7kkv 7kl3 7krp 7kuk 7kum 7kun 7kuo 7kup 7kvt 7kvu 7kvv 7kwg 7l0z 7l1f 7l3r 7lm1 7lma 7lmb 7lne 7lnf 7lng 7lo9 7lva 7lyf 7lyg 7lyj 7md7 7mky 7mlw 7msf 7ndj 7nfx 7nhk 7nhl 7nhm 7nhn 7njc 7nky 7nqh 7nql 7nrc 7nrd 7nso 7nt5 7nt6 7o0g 7oa3 7oav 7oaw 7oax 7obq 7obr 7odf 7odr 7ods 7odt 7oe0 7oe1 7of0 7of2 7of3 7of4 7of5 7of6 7of7 7og4 7og6 7ogk 7ogm 7oi0 7oi3 7okx 7oky 7ol0 7om6 7om7 7oma 7onb 7ope 7q33 7qsh 7qtn 7qua 7r1f 7rex 7sam 7td7 7tda 7tdb 7tdc 7u4a 7uxa 7wnu 7xpg 7xwz 7zpj 7zpl 8DH0 8DH1 8DH2 8DH3 8a40 8a98 8att 8atv 8atw 8b7y 8b9i 8b9k 8bd5 8bd6 8bdr 8be0 8bek 8bf5 8bip 8bvj 8bvm 8bwt 8c5s 8c5u 8dh4 8dh5 8drh 8ehq 8eiu 8ej3 8eoe 8eof 8eos 8eot 8evp 8evt 8ewc 8ewg 8exy 8ffi 8ffy 8fza 8hra 8hrb 8iss 8isz 8it0 8joz 8k9g 8oeu 8oev 8oew 8of0 8ppk 8ppl 8psh 8pxs 8q63 Narrow search to RNA 3D motifs derived from a selected PDB structure
Seed atom: C3' P O5' C5' O4' C4' O3' C3' C2' C1' Select atom type that will be used for initial filtering of matches. Note that algorithm will discard all residues that miss atom you selected.
RNA contacts: Ignore Annotated Any No Match motifs that are in contact with other RNA motis
Annotated base-pairs Annotated base-pairs only
Protein contacts: Ignore Yes No Match motifs that are in contact with a protein
Water/ion neighbors Ignore Yes No Match motifs that have water/ion neighbors
Other neighbors Ignore Yes No Match motifs that have other neighbors
Exclude symmetry contacts
Use N1/N9 atoms of purines/pyrimidines: This may be useful when input structure has reduced representation (e.g. SimRNA)
Include motifs milieu: This option enables composite motif search
Non-redundant RNA Structures Ignore 1.5 Å 2.0 Å 2.5 Å 3.0 Å 3.5 Å 4.0 Å All Use motifs from the Non-redundant RNA Structures Dataset
Eps [Å]: This value is used for selecting trial matches
Max rmsd [Å]: RMSD threshold for final matches
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