Subfamily Intron_gpII-C_BactC

Download the aligments for this family. (.stk)

RNA Shape

Level1

((()()((())(()))(((())(((()()((())))()))))))()(())()(())(())

Level2

(()()(()())(()((()()())())))()()()()()

Consensus Secondary Structure representation

>predicted reference Intron_gpII-C_BactC

GUGCGCCCAUAAAGGGGGGUUAUGGAGAUGUUGCAUAAGCAACUAGGCUAUUGAAAUUAGCCUAGCAUACCCGACUUACCCGAGAGGGAAACCAAAGGGGGAACAUAGCAUGUCGGGAAAAGCCAUAGUGGCCAAAUACCAUUGGCUGACGAAUGGCAAAUGCAAGUAGAUUAAGGAUGAAGGCUAAACUGCUUGAACGAUAGUCCGAGCGGGUAUUAUGGUCCCAUGACGAAGGUGACUGAAACGUCAUUUGCAAGACGAGGGUUAAGAUCUAGUGUUAUCAAAUCACCUUCUAGCGGCGCACCCUCGAUAAGAGGGAAAAAGGACGAAAGUCGAUCCUAAAAUCUAACACGCUAUCUCCAUAAAUUAAAUGGGGAUUGCCUAAGUGGGAAUCCUAAGGGUAUCCGAAUAUCCCAUAUGGCAACGGAGUCUCCGUAGUAGUCCGAGCCCGGUAAAGCCGUGUACAUGGCGAAGGGAGACAGUUUAUUAAAUGCAAAUAAAUGGAGAGCCGUAUACACUGAAAGGUGUACGUACGGUUCGGAGGGGGGCUUUGGAAACCUCCAUAGUAAGUGUAAGGCGCUGGGUGCCUACCCUAC

.....(((((...........(((((...(((((....)))))(((((...........)))))((((.((((((...(((................)))...........))))))....(((((....(((..........)))......)))))..))))...((((....((((..(.((......)).)...(((..((((..(((((..........))..(((...............))).......((....((.(..............)))..........)).....))).(((((.....))))).....)))).....))))))).....))))..........))))).......)))))..(((((.....................................)))))....((((((......(((........................)))....)))))).((((((.........))))))...((((((((.(((((....)))))...))))))))..((((((((....................................)))).))))..