Subfamily Intron_gpII-B_CL2

Download the aligments for this family. (.stk)

RNA Shape

Level1

(((())((()(()))(((())))(((()))))((((()(())))))())((()(()))))(())(())(())

Level2

((()((()())()())(()())())(()()))()()()

Consensus Secondary Structure representation

>predicted reference Intron_gpII-B_CL2

GUGCGAUUCGUUGGGCAAGAAACCUGUCAAGGAAACUAAAUAUGGGGAUGACCCACAAGGAUUAAAGGUCAACCUCAAAGGGAACCUAUGAAUAACUUUUAUGAUGUAGGUGACAAGUCCUACCCUCCAGUAUGUCAGGAGUGACAGCAUAUCCCUACGGUAGAGACUGAUCAUCAAGCCGUGAAGCGGGGAUAAAAGGAGGAAUAAGACACAAACUACAUAAGGUACGACACUGCCAAGCAAGGAGUCCAUGGGUAACAAAACGUGAAGUUAUGUCUGAACCGUCGUUAACAUGAAAGCAGCCAAAACAGAGUUAAUAGGCUGCAAUCAAAAGAUCAAAGACAUAGAGAACCAGCAAAUUCAACUAUUUAUCUGUAUAACACCUCCAAGUAAACCCGGCGGAUAGGUAACACCCUAAAUGUAUCAAUAAAUCAUGAUUAACGGAACGAAAUAACCCCUUUAUGCUCUCAGGAAUGGUCGAUAACCUGAGUAGGCAAAGCCAACCAUACGAGCCAUAAAGGGAGAGAUUGAGUAAGAAGCAAAUGCCUAACUGUAAUACCUAGGAUAUGCAGACAGAAUCACGAUAAACUGGAUAAAUUACUAAAUGUAGUUGCUAAAGAAACGGUGUACCUAUGAAAAAGACCAAAUCACUGAGGAGCCGUGUGAGGUGAAAGUCUCACGCACGGUUCUGAAGGAGAGUCGCGGAAGGUGAUACCCUCGCUGACCUCUAAU

..((..((((((.(...............(..........)...........)..(.................................(...............(((((........)))))(((((.........)))).)....).((((((.((((....(.........)...)))).....))).)))...(..((.......(..................)...)..)......................).....).....(((........(((.((..........(........................).............................(((..((........))...))).....................).)))).....)))...((...........................))))))))......(.((((((..((((((............))))))..(.....(....))........)))))))..................)).....((.....)...............).....................................................................................(((((((((((((((....))))))..)))))))))....(........(............)........)......